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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069929 ID=TCONS_00069929|Name=TCONS_00069929|organism=Clytia hemisphaerica|type=transcript|length=1654bp
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTACGGAATGGGTGGTTACGGCCAACA
AGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCT
ATGGTCAACAAGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGT
TACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGG
CCAACAAGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGG
GCGGCTATGGTCAACAAGGTTACGGAATGGGCGCTTACGGACATACTGGA
TATGGAGGTATGGGTGGCTATGGAGGCTATGGTCAACAAGGCTACGGAAT
GGGAGGATACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTT
ATGGTCAAGGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGT
GGAGCTTACGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAA
CATGGGTGCACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAAT
ATCCAGGACCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCA
CGTCAATTGATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAG
AAAAGACATCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGC
CAGGAGAATGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGA
GGACGTGGTGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCA
AGGCTTCGGTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTG
GAGGTTTGGGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGAT
TGTGGTGGTTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATA
CAACTCACCAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTG
GTTTCGGATTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCAC
CCAACACATCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAG
CCATGGTGGGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTAC
CACATTACGGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGG
GGACATTGAACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTa
attttttagtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaa
acccCAGTTGAATTTATATTCATTTCAATGcctttttttgaaatcaaatt
caTCATAAAAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGT
TTTCGCTATGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAAC
CTTAGCATCATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTA
TATTGTAAACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaa
ttgatacTGATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTC
CCTG Run BLAST on NCBI transcript from alignment at scaffold_511:454274..456173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069929 ID=TCONS_00069929|Name=TCONS_00069929|organism=Clytia hemisphaerica|type=transcript|length=1900bp|location=Sequence derived from alignment at scaffold_511:454274..456173+ (Clytia hemisphaerica)
NNGGAGCATGTGGCGGATATGGAGGCTACGGAAGTCAAGGTTACGGAATG
GGTGGAGGCTATGGTCAACAAGGTTATGGAATGGGTGGTTACGACCAACA
AGGTTACGGTATGGGCGGCTACGGCCAACACGGTTACGGAATGGGCGGCT
ACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGTTACGGA
ATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGGTCAACA
AGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACGGAATGG
GCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAACAAGGT
TACGGAATGGGCGGCTACGGCCAACAAGGTTATGGTATGGGCGGCTATGG
TCAACAAGGTTACGGTTACGGAATGGGCGACTACGGCCAACACGGTTACG
GAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGTGGTTACGGCCAA
CAAGGTTACGGAATGGGCGGCTACGGCCAACAAGGTTACGGAATGGGCGG
CTATGGTCAACAAGGTTACGGAATGGGCGCTTACGGACATACTGGATATG
GAGGTATGGGTGGCTATGGAGGCTATGGTCAACAAGGCTACGGAATGGGA
GGATACGGTGGTTATGGTATGGATGGTGGCTACGGTATGGGAGGTTATGG
TCAAGGGTACGGTCATGCTGGATATGGAATGGGAGCAGGATATGGTGGAG
CTTACGGTGGTTATGGTGTGGGTGGTGGCTATGGAGGCTACGGAAACATG
GGTGCACCAGCCCTAGGAGCACCAGCTCAATCAACTGGTCCAAAATATCC
AGGACCTAACCCACCTGCATTGACGTTACCACAAAAAGCCAAAGCACGTC
AATTGATCATTACTGAAGATGATGAGGATGACACCAGCTCGCGAAGAAAA
GACATCCCAAAAGACGGTCATCATTTACATCGTCTGTTAGTCTTGCCAGG
AGAATGTGAAGGTGATCATTGTACTACCAACTTCCCAGTACACGGAGGAC
GTGGTGGTGGTTGTCAAGGTGCTGGATGTGGTGGATACGGTCACCAAGGC
TTCGGTGGAAACTGGGATGCAGCTGATTGTGGTCATTCAGATTGTGGAGG
TTTGGGATTTGGTAACGGATACGGTGTTGGTTGTGGAGGCGGTGATTGTG
GTGGTTTCCATGATATTCATCATCGTCCAATCGGATGTCCCGAATACAAC
TCACCAGACTCGCCATGTTTAACTTACCCATACGGTAACAATGTTGGTTT
CGGATTTCCAGGAAAATTCCACAGCCACCATCCAGTTTTGTTGCACCCAA
CACATCAAGAAACAGCCCATCATAACATCCATTTATCTGGTCGAAGCCAT
GGTGGGCGTCACGGACGTCGCCATAGCGGAGATTTGATCGTATTACCACA
TTACGGGCATACTTGTTGTGGAGGTGCTGGATGGAATCCATACTGGGGAC
ATTGAACGTCTTAACGACGTGAAAAACTGTATCATAAAGAACACTaattt
tttagtatttgaatTTTATATAAACACCAcgcaaacaaaattgaaaaccc
CAGTTGAATTTATATTCATTTCAATGcctttttttgaaatcaaattcaTC
ATAAAAACGACTTCGTGCTTTAAAGAAATAAGCTGAAAAATCATGTTTTC
GCTATGCGTTGCTTTGGAAAATGTGGCAAATCTATTTTATATAAACCTTA
GCATCATTTCATGTAATTAGAAGCTAGATTTATGTAGCCCAACTTATATT
GTAAACTCGTTCATCTTcgtttttgaaagaaagttttgaaaataaattga
tacTGATCTTAATCCAGGAAAAATATACTCTGCTGGGGGTACTCTCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069929-exon-scaffold_511-1491911889:454274..454345 | TCONS_00069929-exon-scaffold_511-1491911889:454274..454345 | Clytia hemisphaerica | exon |
| TCONS_00069929-exon-scaffold_511-1510915933:454274..454345 | TCONS_00069929-exon-scaffold_511-1510915933:454274..454345 | Clytia hemisphaerica | exon |
| TCONS_00069929-exon-scaffold_511-1575043694:454274..454345 | TCONS_00069929-exon-scaffold_511-1575043694:454274..454345 | Clytia hemisphaerica | exon |
| TCONS_00069929-exon-scaffold_511-1491911889:454592..456173 | TCONS_00069929-exon-scaffold_511-1491911889:454592..456173 | Clytia hemisphaerica | exon |
| TCONS_00069929-exon-scaffold_511-1510915933:454592..456173 | TCONS_00069929-exon-scaffold_511-1510915933:454592..456173 | Clytia hemisphaerica | exon |
| TCONS_00069929-exon-scaffold_511-1575043694:454592..456173 | TCONS_00069929-exon-scaffold_511-1575043694:454592..456173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:454274..456173 + |
Blast
The following BLAST results are available for this feature:
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