TCONS_00069971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069971
Unique NameTCONS_00069971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069971 ID=TCONS_00069971|Name=TCONS_00069971|organism=Clytia hemisphaerica|type=transcript|length=1969bp
NNtttttttttgaatgaaaaatataagcTCTGAGGTTTGAAATTTAGAAG
ACCTTTTTCCAGGCtcagaaatgaaatgaaaaaatagacCTTGAAAGTTC
TGTTTTATTCCTCTGTTCTATCCAATTCCCTTAACAAATTCTTTACGCAA
GGTTCGAAATGATCCAGGAACGGCTCATCGAATTACTTCTCATTATAAGC
TAGGAGAAGTTGCATAGAATAGAAGAATAATTTAATCATTTTCGCACGAT
TGGTGAAGAAAACTAGTAGCGATCTTTAATTTTAGTAGTTCAATTTTATA
ATATTCCATCCTTCTGTTCTTTATTACACTGTTCTAACAAATTCTTTACG
CACCGTTCGAAATGATCCAGGAACGGCTCATCGAATTACTTCTCATCCTA
AGTTAAAACAGCGTAGAACAGAAGAATAACTTGATCATTTACGCACGGTC
CGAGATGGGGAACTCGAATTACTTCTCGTGATCAAGATAGGATGTAGGAT
TGAGGTCTTACCTGCCATTTTTAAAACACGTCCAACCGGCCTTTTAGCTC
CATCTTTACAATGGCCAAGTTTGCCGAATTCTAGCCAATCCACACTTTTT
GTCAACACCACACTAATTGAATTATCGCATTCAAAATGCATCAAAGCAAA
TTTTGGCACTAAAGGCTTTCTTGACATAACGAAAGAATAAGATTTAGATT
AGTAAATAAGGTAAGATTTCTTATTTCTAAGCTTCTGATCCGTAAAGTTT
TGTGAAAAACCGGGAGAACGATTGGTTACACTTTGGCTCTTTTANGCTAT
ACGGAATTCGTATTTGCCggaaatttttcatgttttgctATGATATTTCT
AAAACTCTTCTGACGTCAATGTCTAAACATTTTCACGAGAATGGCCCAGT
TTCGCGTGTACATGGCAACACCAAACGACGTCCACACAATGCTTTTAGTT
TCGANGAGtatttacaagctcttatttcaTTTGGTTGGTCGATaagaaga
aataaaagaatctttttacttttctaagtaacgcgtcatccctatcactt
aaaatgaccaattagtgaaatatcttgtaaaaactccaaggcatctcttA
TGTTTGACGTCACGTTCGAATTTGATTGATGTATTATCGAATGTGCTACA
TTTCATAATTCATGGTCACGTACAAGTCCGCAACATACAGAACGTTCGAA
TTTTACATTGTACGTtcgaaaaaatttatattttcttgtaataatttttt
aactACGTACTATTACGTCCGAAAATATATTTTNCAATGGCTTCGAATTT
ATGGGGTTCACTTCTTTTTGCGAGTTATGGAAATCCCAACTACCAAACAT
AATCATTACCAAGCCCATGGGAGACCTTTGTTGGGTATGCCAGCAAGGGA
ATGAACGACTATTGAGGTCACAATTTGACAGTGACGACGACGAAGCTGAC
GAAATTGATGAAGCGCACAGGCGGCATATTGAGGAGTCCGTTCGAGAGGC
ACGGTATTACAAAGCCCAAGTTGAACGCGCTAAAGAACAGGCTGTAGGTT
TAACGGACGCGTTTTCTCAAAAAGCGCCATGCTCATCGGATAGCATTGCA
CATTACTCTTGGGATTATGCCCAGCAAACACACTATCCGGCGAATCCTCT
TCAACCAGGACCAATTTATTTTAAAACGCCACGGAAATGTGCAATTTTCG
GTATTTGCAATGACGGCATAAATCTCCAATTCGACTACCTTATAGACGAA
ATTTGCACCACTGGGAAAGGGGCTAATACAACTATCAGTTATCTCCACCA
cttcttcaaaacttttggCATGGGAGAAAAGGATGCTTATCTACACGCTG
ATAATTGTTCTGgacaaaacaaaaacaatgctTTTGTATGGTACCTCATG
TGGAGGATTATCAATGGATATCACGAATCTATTGAATACTCGTTTATGGT
TGCCGGACATACCAAGTTT
Run BLAST on NCBI

protein sequence of TCONS_00069971-protein

>TCONS_00069971-protein ID=TCONS_00069971-protein|Name=TCONS_00069971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MGFTSFCELWKSQLPNIIITKPMGDLCWVCQQGNERLLRSQFDSDDDEAD
EIDEAHRRHIEESVREARYYKAQVERAKEQAVGLTDAFSQKAPCSSDSIA
HYSWDYAQQTHYPANPLQPGPIYFKTPRKCAIFGICNDGINLQFDYLIDE
ICTTGKGANTTISYLHHFFKTFGMGEKDAYLHADNCSGQNKNNAFVWYLM
WRIINGYHESIEYSFMVAGHTKF
Run BLAST on NCBI

transcript from alignment at scaffold_511:569701..571942-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069971 ID=TCONS_00069971|Name=TCONS_00069971|organism=Clytia hemisphaerica|type=transcript|length=2242bp|location=Sequence derived from alignment at scaffold_511:569701..571942- (Clytia hemisphaerica)
NNTTTTTTTTTGAATGAAAAATATAAGCTCTGAGGTTTGAAATTTAGAAG
ACCTTTTTCCAGGCTCAGAAATGAAATGAAAAAATAGACCTTGAAAGTTC
TGTTTTATTCCTCTGTTCTATCCAATTCCCTTAACAAATTCTTTACGCAA
GGTTCGAAATGATCCAGGAACGGCTCATCGAATTACTTCTCATTATAAGC
TAGGAGAAGTTGCATAGAATAGAAGAATAATTTAATCATTTTCGCACGAT
TGGTGAAGAAAACTAGTAGCGATCTTTAATTTTAGTAGTTCAATTTTATA
ATATTCCATCCTTCTGTTCTTTATTACACTGTTCTAACAAATTCTTTACG
CACCGTTCGAAATGATCCAGGAACGGCTCATCGAATTACTTCTCATCCTA
AGTTAAAACAGCGTAGAACAGAAGAATAACTTGATCATTTACGCACGGTC
CGAGATGGGGAACTCGAATTACTTCTCGTGATCAAGATAGGATGTAGGAT
TGAGGTCTTACCTGCCATTTTTAAAACACGTCCAACCGGCCTTTTAGCTC
CATCTTTACAATGGCCAAGTTTGCCGAATTCTAGCCAATCCACACTTTTT
GTCAACACCACACTAATTGAATTATCGCATTCAAAATGCATCAAAGCAAA
TTTTGGCACTAAAGGCTTTCTTGACATAACGAAAGAATAAGATTTAGATT
AGTAAATAAGGTAAGATTTCTTATTTCTAAGCTTCTGATCCGTAAAGTTT
TGTGAAAAACCGGGAGAACGATTGGTTACACTTTGGCTCTTTTANGCTAT
ACGGAATTCGTATTTGCCGGAAATTTTTCATGTTTTGCTATGATATTTCT
AAAACTCTTCTGACGTCAATGTCTAAACATTTTCACGAGAATGGCCCAGT
TTCGCGTGTACATGGCAACACCAAACGACGTCCACACAATGCTTTTAGTT
TCGANGAGTATTTACAAGCTCTTATTTCATTTGGTTGGTCGATAAGAAGA
AATAAAAGAATCTTTTTACTTTTCTAAGTAACGCGTCATCCCTATCACTT
AAAATGACCAATTAGTGAAATATCTTGTAAAAACTCCAAGGCATCTCTTA
TGTTTGACGTCACGTTCGAATTTGATTGATGTATTATCGAATGTGCTACA
TTTCATAATTCATGGTCACGTACAAGTCCGCAACATACAGAACGTTCGAA
TTTTACATTGTACGTTCGAAAAAATTTATATTTTCTTGTAATAATTTTTT
AACTACGTACTATTACGTCCGAAAATATATTTTNCAATGGCTTCGAATTT
ATGGGGTTCACTTCTTTTTGCGAGTTATGGAAATCCCAACTACCAAACAT
AATCATTACCAAGCCCATGGGAGACCTTTGTTGGGTATGCCAGCAAGGGA
ATGAACGACTATTGAGGTCACAATTTGACAGTGACGACGACGAAGCTGAC
GAAATTGATGAAGCGCACAGGCGGCATATTGAGGAGTCCGTTCGAGAGGC
ACGGTATTACAAAGCCCAAGTTGAACGCGCTAAAGAACAGGCTGTAGGTT
TAACGGACGCGTTTTCTCAAAAAGCGCCATGCTCATCGGATAGCATTGCA
CATTACTCTTGGGATTATGCCCAGCAAACACACTATCCGGCGAATCCTCT
TCAACCAGGACCAATTTATTTTAAAACGCCACGGAAATGTGCAATTTTCG
GTATTTGCAATGACGGCATAAATCTCCAATTCGACTACCTTATAGACGAA
ATTTGCACCACTGGGAAAGGGGCTAATACAACTATCAGTTATCTCCACCA
CTTCTTCAAAACTTTTGGCATGGGAGAAAAGGATGCTTATCTACACGCTG
ATAATTGTTCTGGTATGATTAATTTGTTTTCAAATTATACACTTCTGTGC
CTAGTTGGAGGGAGGGGTAATCTCAGAAAGAAATTAGTATAAAGTCGGTA
TTAAGTATTCTCTGTAATTCGAGTCTTCCTCTAATTCGAAGAAAATTCTC
AGCCCTTGAAGATCGAGAGAGTCAACTAATAAAACTTTTTTCTGCACTAT
GAGCACTCAATGTAAGGTTTGTTCTTTTAAGATTTTTACAATGACAAGAC
CAATTCTGATTTCAGTTTTCTTTTCCTTTTTTCAGGACAAAACAAAAACA
ATGCTTTTGTATGGTACCTCATGTGGAGGATTATCAATGGATATCACGAA
TCTATTGAATACTCGTTTATGGTTGCCGGACATACCAAGTTT

Coding sequence (CDS) from alignment at scaffold_511:569701..571942-

>TCONS_00069971 ID=TCONS_00069971|Name=TCONS_00069971|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at scaffold_511:569701..571942- (Clytia hemisphaerica)
GACAAAACAAAAACAATGCTTTTGTATGGTACCTCATGTGGAGGATTATC
AATGGATATCACGAATCTATTGAATACTCGTTTATGGTTGCCGGACATAC
CAAGTTTATGGGGTTCACTTCTTTTTGCGAGTTATGGAAATCCCAACTAC
CAAACATAATCATTACCAAGCCCATGGGAGACCTTTGTTGGGTATGCCAG
CAAGGGAATGAACGACTATTGAGGTCACAATTTGACAGTGACGACGACGA
AGCTGACGAAATTGATGAAGCGCACAGGCGGCATATTGAGGAGTCCGTTC
GAGAGGCACGGTATTACAAAGCCCAAGTTGAACGCGCTAAAGAACAGGCT
GTAGGTTTAACGGACGCGTTTTCTCAAAAAGCGCCATGCTCATCGGATAG
CATTGCACATTACTCTTGGGATTATGCCCAGCAAACACACTATCCGGCGA
ATCCTCTTCAACCAGGACCAATTTATTTTAAAACGCCACGGAAATGTGCA
ATTTTCGGTATTTGCAATGACGGCATAAATCTCCAATTCGACTACCTTAT
AGACGAAATTTGCACCACTGGGAAAGGGGCTAATACAACTATCAGTTATC
TCCACCACTTCTTCAAAACTTTTGGCATGGGAGAAAAGGATGCTTATCTA
CACGCTGATAATTGTTCTGGACAAAACAAAAACAATGCTTTTGTATGGTA
CCTCATGTGGAGGATTATCAATGGATATCACGAATCTATTGAATACTCGT
TTATGGTTGCCGGACATACCAAGTTTATGGGGTTCACTTCTTTTTGCGAG
TTATGGAAATCCCAACTACCAAACATAATCATTACCAAGCCCATGGGAGA
CCTTTGTTGGGTATGCCAGCAAGGGAATGAACGACTATTGAGGTCACAAT
TTGACAGTGACGACGACGAAGCTGACGAAATTGATGAAGCGCACAGGCGG
CATATTGAGGAGTCCGTTCGAGAGGCACGGTATTACAAAGCCCAAGTTGA
ACGCGCTAAAGAACAGGCTGTAGGTTTAACGGACGCGTTTTCTCAAAAAG
CGCCATGCTCATCGGATAGCATTGCACATTACTCTTGGGATTATGCCCAG
CAAACACACTATCCGGCGAATCCTCTTCAACCAGGACCAATTTATTTTAA
AACGCCACGGAAATGTGCAATTTTCGGTATTTGCAATGACGGCATAAATC
TCCAATTCGACTACCTTATAGACGAAATTTGCACCACTGGGAAAGGGGCT
AATACAACTATCAGTTATCTCCACCACTTCTTCAAAACTTTTGGCATGGG
AGAAAAGGATGCTTATCTACACGCTGATAATTGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043554XLOC_043554Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069971-proteinTCONS_00069971-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069971-exon-scaffold_511-1575043694:570081..571942TCONS_00069971-exon-scaffold_511-1575043694:570081..571942Clytia hemisphaericaexon
TCONS_00069971-exon-scaffold_511-1575043694:569701..569807TCONS_00069971-exon-scaffold_511-1575043694:569701..569807Clytia hemisphaericaexon
TCONS_00069971-exon-scaffold_511-1510915933:570081..571942TCONS_00069971-exon-scaffold_511-1510915933:570081..571942Clytia hemisphaericaexon
TCONS_00069971-exon-scaffold_511-1510915933:569701..569807TCONS_00069971-exon-scaffold_511-1510915933:569701..569807Clytia hemisphaericaexon
TCONS_00069971-exon-scaffold_511-1491911889:570081..571942TCONS_00069971-exon-scaffold_511-1491911889:570081..571942Clytia hemisphaericaexon
TCONS_00069971-exon-scaffold_511-1491911889:569701..569807TCONS_00069971-exon-scaffold_511-1491911889:569701..569807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_511supercontigscaffold_511:569701..571942 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.643473	0.449699	0.479298	0.669883	6.0892	4.35861	3.72629	4.46364	3.68588	2.73528	2.54919	3.04617	2.19445	3.28542	3.91232	2.08686	3.12817	2.3769	1.18664	1.78596	9.47908	9.12019	1.45023	1.50791	1.19034	1.63337	3.25408	2.77286	2.10008	1.4571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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