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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069940 ID=TCONS_00069940|Name=TCONS_00069940|organism=Clytia hemisphaerica|type=transcript|length=3308bp
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAA
CATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTT
CATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCGTG
GAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTC
GATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTCTA
AACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTTCG
TGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGTTA
TTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTTCT
CTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagtaGT
TGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAATCA
TTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttttc
aCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttttt
cttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCTCT
TGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTTTG
AGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGTGT
TCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTATTT
AGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATGAC
TTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTGAC
CACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAACT
GAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgtct
tttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATTAA
TAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATTTT
AGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGGAT
ATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTATCT
TGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGAGA
AAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCAGC
CTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATTCA
CATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTTTC
AATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACATCG
GTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACAGT
TAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCCAA
TACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATGAC
AACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTGAA
TATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTAGA
CAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAACC
AGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCCTA
GCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCGGT
AGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATCAA
ATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAGTG
TACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTAAT
TTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATTGT
AGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGTGT
TCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAAGG
AGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGACTG
TGTACTCA Run BLAST on NCBI transcript from alignment at scaffold_511:593631..597190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069940 ID=TCONS_00069940|Name=TCONS_00069940|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_511:593631..597190+ (Clytia hemisphaerica)
GTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGCTTCATGGT
AGTGGGATAAATTCTCTAAACATTGTCCAATGGCATGCTTCGTGATGAGG
TAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTC
TTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTAAACATT
GTCCGATCTCATGCTTCGTGGAGAGGTAACGGTTGTGACGTTCACCGAGA
GTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCCTCATG
GTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGATGA
GGTAACTGTTGTGACGTTCACCAAGAGTGTCCTTTTGAACGCTTTCGGTT
TCTTTAAATATACGTAATGCGTCATGGTAGTGAGATAAATTCATTAAACA
GTTTCCAATGGCATGCTTCGTGGAGAGGTAACTGTTGTGACGTTCACCGA
GAGTGTCCTTTTCAACGGTTTCGATTTCTTTAAATATACGTAATGCGTCA
TGGTAGTGAGATAAATTCATTAAACAGTTTCCAATGGCATGCTTCGTGGA
GAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTTTCGA
TTTCTTTAAATATACGTAATGCGTcttgattttgagataaattctCTAAA
CATTGTCCAATGGCATGCTTCGTGATGAGGTAACTGTTGTGACGTTCACC
GAGAGTGTCCTTTCGAACGGTTTCGATTTCTTCAAATATACGTAATGCGT
CATGGTAATGAGATAAATTCTTTAAACATTGTCCGATCTCATGCTTCGTG
ATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTTAACGGTTTC
GATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGATAAATTCTTTA
AACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACGTTCA
CCGAGAGTGTCCTTTCGAACGGTTTCGATTTCTTTAAATATACGTAATGC
TTCATGATAATGAGATAAATTCATGAAACAGTGTCCAATGGCATGCTTCG
TGGAGAGGTAACGGTTGTGACGTTCACCGAGAGTGTCCTTTTCAACGGTT
TCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTCTC
TAAACATTGTCCGATCTCATGCTTCGTGGAGAGGTAATGGTTGTGACGTT
CACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTAAT
GCTTCATGATAATGAGATAAATTCTTTAAACAGTGTCCAATGGCATGCTT
CGTGATGAGGTAACTGTTGTGACGTTCGCCGAGAGTGTCCTTTTCAACGG
TTTCGATTTCTTTAAATATACGTAATGCTTCATGATAATGAGATAAATTC
TCTAAACATTGTCCAATGGCATGCTTCGTGGAGAGGTAATGGTTGTGACG
TTCACCGAGAGTGTCCTTTTGAACGGTTTCGATTTCTTTAAATATACGTA
ATGCTTCATGATAATGAGATAAATTCATTAAACAGTGTCCAATGGCATGC
TTCGTGATGAGGTAACTGTTGTGACGTTCACCGAGAGTGTCCTTTTCAAC
GGTTTCGATTTCTTTAAATATACGTAATGCGTCATGGTAATGAGAAAGGT
TATTTAAAGTGTTTGCATAATTATATTTAGTTTTAAAATACAAGTCTTTT
CTCTCATAACCATCTGTATGTGAAAGTTTTTccatcatttttttcaagta
GTTGGAAAGTCTTCTCATATGTCCTTGTGTTTCAAAAAGATGAATCAAAT
CATTCTGTACATCAATCAATTTCataagaaagatattttcaacatctttt
tcaCAGATGAAAAGAAAATGCTGGTACCAGTATTTGCCatccattttttt
ttcttgacttCTGCAATTTCTCATGTCTTCAATAAAGGTATTTGCTAGCT
CTTGATAGACTGGTTCTTTGACATTTGGAACGTAAGTTTTGAGAAAGGTT
TGAGTTAGTTCGTGACAATTTATTTGGTTTTCTAGAAAGCATGTACCTGT
GTTCGTGGTTTCAATGATTGAGTACTTGGCCAATAAAGATAATATCTTAT
TTAGAACAAATACATCATCAACAAATTTGATCAGTAATCCTTTCCTGATG
ACTTTTCCATCCAAGTAGGAGATTTTGTTTAGAAGATCATTAACTTTTTG
ACCACCTTCCTGTAATAATCTATTATAGGTCAAAGACAAAGTAGTATAAA
CTGAAGGGTTTCCGATTTCTTGGGTTCCCTCTGAAAGAAgttctttttgt
cttttatcGAATATGGTTAGGTACATTTCAACAGTTAGTCCATTCTTATT
AATAAATGAAAACGCCTGCTGTAGAGCAAGGGGTAGATAGCTGAGAGATT
TTAGAAGTTTTTGGTTTGCTTCTTTATCTTTGCGTGCGTCTACATCGTGG
ATATTTCTCTCTAAGAACTGTTCAGCCTCTTTGCTAGAAAATTGTTTTAT
CTTGATAACATCGAATCGTTGATCCCATTCACCGCATTGTGAGGTGATGA
GAAAATATGGTGCTTCCTTTTTGGTGTCAGGAATCAAATCGACCAAAGCA
GCCTGATTGATGACATTGTCTAGGACAAACAATACTTTACGGGGTTTATT
CACATCCTGTCTTACTGAGAAGTAATCGTAAACAAGATTTGAGATCTCTT
TCAATGGTTTGGCTGACCCATTTTGATTATAGATCTGATTAATGCCACAT
CGGTTGGCGATCTCGGTGAATGATTTTTCGATGTTGACCAAGCTGTTACA
GTTAATCCAACAAACGATATCCTCGTAATAAACATTACGATAGGATTGCC
AATACTCGCGAGCAGTTTCTGACTTTCCACTGCCCCCAATCCCACTGATG
ACAACAGAGAATTTGAAGTCATCGTGGTGTTGACGGTAAACTGCTTGGTG
AATATTGCTGATCAGGTTTGCTCTTCTGAAGTGGTTGGCAACTGGCGGTA
GACAGGCATAATTGAAAGAAGTCTTGGTCATCAGTTTTTTCACTTTAGAA
CCAGCAATCCATATATTACATATGTCATCAAATTCAGCCTTGGATAGCCC
TAGCTGTAATAAGGGTGGTTCTGCATCACTTAGTATGGCATTGAATTCCG
GTAGACTGACTTTGGTACCACCATGTTGGATCCTATTCCTGATTTTTATC
AAATCTTTCATATTTTCTCCGAAGAACTCTCTAGTTACAAAAAAGAGGAG
TGTACTGTCAAACTGGTCAAGGTAGACCATTCCAGAAGTTGGAAGGAGTA
ATTTGTATTGCTCATCTTTGATGACATTTTTTCTCCTCAGTTTATCGATT
GTAGCTTTATGTGATAGAAAGAATTGAAATACTTTTGCTGGATCTCGTGT
GTTCAGTTTTTTGTGTATTCTCTCTCGCAGCTGGTTGTCTAATTTGCCAA
GGAGAACCTGGCAACGAAACCCTCTTTCTTGGTCCTCGTCAGTATGTGAC
TGTGTACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069940-exon-scaffold_511-1491911889:593631..594233 | TCONS_00069940-exon-scaffold_511-1491911889:593631..594233 | Clytia hemisphaerica | exon |
| TCONS_00069940-exon-scaffold_511-1510915933:593631..594233 | TCONS_00069940-exon-scaffold_511-1510915933:593631..594233 | Clytia hemisphaerica | exon |
| TCONS_00069940-exon-scaffold_511-1575043694:593631..594233 | TCONS_00069940-exon-scaffold_511-1575043694:593631..594233 | Clytia hemisphaerica | exon |
| TCONS_00069940-exon-scaffold_511-1491911889:594486..597190 | TCONS_00069940-exon-scaffold_511-1491911889:594486..597190 | Clytia hemisphaerica | exon |
| TCONS_00069940-exon-scaffold_511-1510915933:594486..597190 | TCONS_00069940-exon-scaffold_511-1510915933:594486..597190 | Clytia hemisphaerica | exon |
| TCONS_00069940-exon-scaffold_511-1575043694:594486..597190 | TCONS_00069940-exon-scaffold_511-1575043694:594486..597190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:593631..597190 + |
Blast
The following BLAST results are available for this feature:
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