TCONS_00070202 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070202
Unique Name	TCONS_00070202
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1794

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_516:229692..236221+

transcript sequence

>TCONS_00070202 ID=TCONS_00070202|Name=TCONS_00070202|organism=Clytia hemisphaerica|type=transcript|length=1794bp
TTTCCCTTAAATCCAACTCAGTGGTAACTTTTACTTCATTTCAGCTTTTA
GAAAGCCATCTcaactcttaaaaaaaatatatttcttgaaaTGATTTTGC
GACAATTCTGATATTGTGGTTGGTTGGTTAGAGTCAATTGGAGAATTTGG
ATTTCATGCGAACATTACTAATAGCAATACCATGAACATTAATACTGGTG
GAGGATTTAACAATACAGGTGGTCTCGGTGTAGCCAACATCCCACCACAG
GTCCCACAACAAATGCAACAAgttcaacaacaacagcaacctATTCAACA
GCAAGTCACAGATAATATGCAATTAAATATGGAGCAGCATATACAACAGA
CTAATTCTCGCTTACAAATTATACAACGTGATCTAAACAATGCTGCCACT
TTCCAAAGTGCTGCCAGAGAACTGTTGGATTGGTGTGGTGATGCCAGAGC
TTTTCAACAATCATACGAACCCAATCTCATGAATTGCCTTACCgtTGTAA
GCAAAGTTGCATCAATGCAAGGCTATGATTTACGTTTGGGTTACCGCCTT
CTTGCTGTGTGTTCTGCTCACAAAGAAAAGCTGTCACAAAAATCCTCTAC
CATATTAACTCAATGGTCCGAAGAGCTTGGTCGCTTGTTACTATTACGTC
ATCAAAATGAAAGCAACGGCAAACCAAACTTCAACGCCAATCAAATGAAA
CCGATGCCTGCACCAATGGCTAGAGGGGACAGTACTATTGCATGGCAACC
AAACAGTCAACAACAACAGCAGACCAATGTATCAGTCACTGTCTCATCTG
TATGGGGAGTCTCCTCTACCCCCTCCGTCAATCAACCCATGAATACAGGA
AATGCGGGTGGAGGGGGAGGCGGTATGAACCAACAGGGCGGTCAAACTTT
TGATCAAAGTGGTGGAAATAACCAACAGATGAAAAACATGAATAACCAAC
CAGGCTTCAACAATTCGAACAATGGAGTTGGTGTACAGCGCAATGACATG
AACGTAGTCAGTAACGTCATGTTACAACGCCAAGGATCCAACGTTCAAAT
CAACCAACAAACCAACGTCAATGCAAATAACCAAGGTAGTACTAGCTTTT
CAACACAATTCACACAAAGTGGACCGCAGAACCAAAACAACGTTTCCGGT
CCTTTCCCCGCGGCTGCCGCTGCTGCTGCAGCAGTTGCGGCAGCAGCGGC
CACAGCAACCGCTACAGCGACTGCTACAGCGACGCTTCAGATGCAAGAGC
AGCCACAGCCCGACCAAATGAACAGAGGAGATATGATGGATAATCAACAA
CAACAGTATCAGATCCAAGGGCAGACAAACGTACAAACGGGGCGTGGTAT
GATCAATAATACGATCAATGGAAGTATGAATAGACAGATGTTCAATAAAC
CAATGGGCTATATGATGAACAACCCAAATAATATGACCCAATACATGACA
TCGCAACAGCGAAATTTCATGAATCAAGGAATGAACCGAAACATGATGAG
TCGCTTTCAAGGTCCACAACTAAAGCGACCGCCAATGATGGGAGGTTACG
GTAATAATATGATGACAAGCCCAATGACGCCCGACCCGCCCAACGGTCAG
TTTAGTCCATACGGACCACCCGGTGGCATGAACAGATCTGGACCAGGATT
TCCACCGCAGTATCAGCAGCCGCCGCCCGGGTACAACGGAAATAATTTCA
ATGCAAATATGGGCGGAGCAAATATGGGTGGGATGGGCGGTATGAATATG
GGGATGAATAATAGTATGGGAATGAGTGGAAATAATAGTATGGG

Run BLAST on NCBI

transcript from alignment at scaffold_516:229692..236221+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070202 ID=TCONS_00070202|Name=TCONS_00070202|organism=Clytia hemisphaerica|type=transcript|length=6530bp|location=Sequence derived from alignment at scaffold_516:229692..236221+ (Clytia hemisphaerica)
TTTCCCTTAAATCCAACTCAGTGGTAACTTTTACTTCATTTCAGCTTTTA
GAAAGCCATCTcaactcttaaaaaaaatatatttcttgaaaTGATTTTGC
GACAATTCTGATATTGTGGTTGGTTGGTTAGAGTCAATTGGAGAATTTGG
ATTTCATGCGAACATTACTAATAGCAATACCATGAACATTAATACTGGTG
GAGGATTTAACAATACAGGTGGTCTCGGTGTAGCCAACATCCCACCACAG
GTCCCACAACAAATGCAACAAgttcaacaacaacagcaacctATTCAACA
GCAAGTCACAGGTAGGTTCTTTGTCCAAAAGTGCAGTAGAATGGAGAATG
AGGTTAAAGATTTATAGCAATATTTCTAGAGTGGGAcaaatttattttag
aaatataAAAAGTCTATAAATGGGGAAGATGTCATGAGGGTCATGACATC
TCCTAGATTTCAAGCTCTTTCCGGCCTTTTGTTCATCAGTTTTAAAGGAC
TTTGCTTATTTTCGAGCAGCTCCAATTTGGAAGTCCTTCTGCTAATCTGT
AGGATTGATAATGATAACCTATAGTTTGATATTCACTACGGTGTAAAACA
TATGCAAGGTTAAACTAACTTTTAATCTCGAATGGTGGAAATACAGATTT
CATAGCAGTGCCTAGTATATTCTTGTTCAagaaattgattgaaaatttca
cgTCAGTATGGAAATTGCAGATCTCGATTTTTTACATAGGAGATCTTCCC
ATATTTTTCGAATCAATGTAAATCATATTGGACTTGCTGAGAAAGCTCTC
TTAATGATTCTGGACTGATTAGCGTTGTTTTGATTGAATTGCGTCAGCAT
TTTAAAACGTGCAGTGATTTACAGGTTTTTTAAATCTGCTTGCGTCAGCA
AGATTTAGGTTTTTAGTAAATGTACATACAAGTTCAAACTTGTTATCTAT
CGTTTTTTCTCTCTtacattttagagattttggtTAACACTTTTATTGTT
TCATGTTTGTTGTGTGTAATAGATCTAGTATCGACCTCATTAGCGATTTG
CTAGAATGCTAATGACTTGCATAAATAAGTATCAAGCACACAAACATATT
GTTTCCTTGTAGagtaataaaaaatatatgatgTAGGTAATAGAGAACTA
CTTATAATGCTGAACTTTTAAACAACACTATGCAAAATGAAGTAATCAAG
TTTAATTAAGTGACGTTTTGTGTgattaacaacaaaataaagagagtagt
ttcttttctttataataAAAGAAAAGTAAGAGGAATGAGGGTGAGATGAC
ATTTCTGTTAATTGACAACTTGTCAAATTGATGTATCAGCTTTTGATGCT
TTTACTGCTTTGGGTAGTTGactgttatttattttttctcttgACAATGT
GTACATTATTTTGTTTGTTAAGTACCCTTACTTCAAAGAAGAACTATTTG
CTTTCCTTTCTTACAAATCTAGNTTTTTTCTCTTGACAATGTGTACATTA
TTTTGTTTGTTAAGTACCCTTACTTCAAAGAAGAACTATTTGCTTTCCTT
TCTTACAAATCTAGGAGTATTAAATTACAGACAAGCAACCTTCActctta
gatttttttctgctGCAAGCCTATTTATATTAATGGAGAAGAGAGATATT
TTAAAGAGCATTATATCAATTGGctcattatgattttttaaatcttgttt
tgtagatttttatGCACAGTGGTTTTAATTATATTATCAGTCATATTATA
CTGTCGGGACATATGATGTTTATTTCTAAGAATTGATGGATTTGGGAAGA
CCTGCATTCCTCGTATATAACTTTGAAGGACCTCCATTTTGAGCTTCGGG
GTACATAAAACACATAATTAGATCGTTAACCATTGATCTTTCAGTATGCT
ATATCAAgtttggttttatttttccAAGTGAAAACTCACTTTTAAGTTCT
ATCTACATCTTGTTATTTTAGATAATATGCAATTAAATATGGAGCAGCAT
ATACAACAGACTAATTCTCGCTTACAAATTATACAACGTGATCTAAACAA
TGCTGCCACTTTCCAAAGTGCTGCCAGAGAACTGTTGGATTGGTGTGGTG
ATGCCAGAGCTTTTCAACAATCATACGAACCCAATCTCATGAATTGCCTT
ACCGTAAGTCTTGTATACTTGTATANTTGGATTGGTGTGGTGATGCCAGA
GCTTTTCAACAATCATACGAACCCAATCTCATGAATTGCCTTACCGTAAG
TCTTGTATACTTGTATACTCTGATCTATACTGAAGCCTTAAAGTTTGGTC
AATGAAGACTAGAATCTTTTTATGTAAAGTTTTCTATACGATTGCCTAGT
ATAGAAgatcctttttttttaaaaaacgaaGAAAACTTGTATGGAAAATA
GCATAACAGATATTATTTTGATCGTGTGAAAAAGAGTAACCTGGAACTGC
TGGAAACttgattttgaaagtttcaCACATTTGAAAGGTGTTAATCAATC
CAGATAACATATATAGCGAAGATTGTTATTGATCTAAATCATGAATGACG
AAAACGATATCTTTAAGCCTCTTTTAATTGATCCTGCGTCATAAAgatta
tctttttctttgttttctctcgTTTCGATAATTTCAATCATTGTACACCC
AAGTGAGCCCCGTTTCGGAGTTTAACGTTTTGGCAGCGATTTTTATTCTG
GAAGCACCGCAGCGAAAAcagacattgtgacgtcacGAGTGACCtatctt
taattttaaaaagtggggATTCATATTAATTGTCGATTGAaagtatattt
ttaaatttctacGTTTTGTTCGANAAAATAGCATAACAGATATTATTTTG
ATCGTGTGAAAAAGAGTAACCTGGAACTGCTGGAAACttgattttgaaag
tttcaCACATTTGAAAGGTGTTAATCAATCCAGATAACATATATAGCGAA
GATTGTTATTGATCTAAATCATGAATGACGAAAACGATATCTTTAAGCCT
CTTTTAATTGATCCTGCGTCATAAAgattatctttttctttgttttctct
cgTTTCGATAATTTCAATCATTGTACACCCAAGTGAGCCCCGTTTTGGAG
TTTATCGTTTTAGCAGCGATTTTTATTCTGGAAGCACCGCAGCGAAAAca
gacattgtgacgtcacGAGTGACCTATCTTTAAATTTCCTTAAGTGGGGA
TTCATATTAATTGTCGATTGAaagtatatttttaaatttctacGTTTGGT
TCgaaaaaagtgcaaaatatttttacgtttttaggtTGTAAGCAAAGTTG
CATCAATGCAAGGCTATGATTTACGTTTGGGTATGTATCAGTCAATCCTC
caaatgaaaatcgaaaatttataAAGCTTTATTTTTGACAATCAAAGAAA
TTTGAACTAAATTAAGCATTATACGTATTATTTACACTATATAGTAGGAT
ATTCAAATCTTTCGGATCTTTCATCCAACAGTATTCCCTAGTTCAAACTA
CCGAAAAAAGTATTGTACACATCCGTCAAACACTTGTTATTTTCGCTTTC
GTACTGTTGCTTTCATATTATCGGAAACAATACATTAAATAATTATACGC
CATTACTTTTTGTCTTGTTTGTAGGTTACCGCCTTCTTGCTGTGTGTTCT
GCTCACAAAGAAAAGCTGTCACAAAAATCCTCTAGTAAGCCATTCTTTGG
TTTGGAAggattttaaaaatcttaactATATGCTCAGACCTGTCAAATCT
AATGATAGAAGATCGTTCAAAGCTTACGCTTATTTGCATGTACGGTTATC
CTGGGCGGCATTGATAAACTGGGTGGCAAAATTGGGTCATTTAATAATTA
ACTCCTTTAGAAGTCAATAATTAACTCCTTTAGAAGACGTCTATCGTACA
ATACGCATCTTGGCTTGGCTGTattcttttttctgaaattcattaaaaaa
aatttctacgCTTTTCTTAGCCATATTAACTCAATGGTCCGAAGAGCTTG
GTCGCTTGTTACTATTACGTCATCAAAATGAAAGCAACGGCAAACCAAAC
TTCAACGCCAATCAAATGAAACCGATGCCTGCACCAATGGCTAGAGGGTT
AGTTTCAAATTCACTATCTTGTAAATTGCATAGTTTTTATTTCCAGAAAT
TTCATGATCCAATACAATAGGATTACCTTTTTCCCAAATTCGTAGTTCTG
AATAGTTATGTATTCGCATTCATTATTGAACCACATGTGTGATCTAGTTA
TATTTTTTTCGACAGGCTGTTTTTATTGTCTTGTTTGTAAGAATATTCTG
AatgaaactttttaaaactCTTTTCCATTTTTGACATAACGAGGCTGTAT
TTTACTGTCCTGCCGTTTTTGAATATTATATtcttatcagaaaaattttg
agttaaattttttttcattgggtAATTTCATTATAGGGACAGTACTATTG
CATGGCAACCAAACAGTCAACAACAACAGCAGACCAATGTATCAGTCACT
GTCTCATCTGTATGGGGAGTCTCCTCTACCCCCTCCGTCAATCAACCCAT
GAATACAGGAAATGCGGGTGGAGGGGGAGGCGGTATGAACCAACAGGGCG
GTCAAACTTTTGATCAAAGTGGTGGAAATAACCAACAGATGAAAAACATG
AATAACCAACCAGGTACATCAGAATTGTTTGAAAGTCTACAGTATTACAG
TTTTCTGTTGTAATAAAACCATTTTGAATACAAAAGTTTAGGAAACATTA
CCGTAAACAAACATTACGTACCTAAAAATCCATTCCTTCAAGTCTTCTAA
AATTCCAAATTAAAGCCTGTACAAAAGACAAAGCAGTAATATTTGAGAAT
TTCTTTTCATCTGTAGGCTTCAACAATTCGAACAATGGAGTTGGTGTACA
GCGCAATGACATGAACGTAGTCAGTAACGTCATGTTACAACGCCAAGGAT
CCAACGTTCAAATCAACCAACAAACCAACGTCAATGCAAATAACCAAGGT
TCGTAAAATGTTAGAATTCCTTGTTTGTATAAGCCTTTTACAATGAAAGC
AACGGCTTAGGTATTGAATTGTGATGTAAGTTTCCGAAAGTTGGTGTGAT
TTTTACCGCATGAAAATACAAAATGTCCGTGTTATTGTCACTTTAATTTT
AAGGAAGGTGTGTTATTTTATTTAATCCTTTAAACTTCTAGGTAGTACTA
GCTTTTCAACACAATTCACACAAAGTGGACCGCAGAACCAAAACAACGTT
TCCGGTCCTTTCCCCGCGGCTGCCGCTGCTGCTGCAGCAGTTGCGGCAGC
AGCGGCCACAGCAACCGCTACAGCGACTGCTACAGCGACGCTTCAGATGC
AAGAGCAGCCACAGCCCGACCAAATGAACAGAGGAGGTAAGATTAATTCG
TAAAGACTTTTTAGCAACGGGGATAGTTCTCTTCATTGCAAGCTTTGACT
TTGACAACGATTCCTAACATTACAGCATAAATGGGAGATCTGTAACAGTC
ACTACTAACTGGCATGGAGATATGGCATTAGCCTTATATGTTTGACAGCG
GTATAAagtaatactaataatatatCTCAAGTTTGAAGACTCGTTACTTA
AACTCCATTCCTATTTCCCTTTCAAACTTGACTTTTTTGTTCGTTCAGAT
ATGATGGATAATCAACAACAACAGTATCAGATCCAAGGGCAGACAAACGT
ACAAACGGGGCGTGGTATGATCAATAATACGATCAATGGAAGTATGAATA
GACAGATGTTCAATAAACCAATGGGCTATATGATGAACAACCCAAATAAT
ATGACCCAATACATGACATCGCAACAGCGAAATTTCATGAATCAAGGTAC
AGAGACGAGACTCTGAATCCCCATTGTATTACCCTTGTATTTCCTAATGC
CGAATCTTGCTAGCCaaaatttcatttgttttttataactATAAGATTTC
AAGCTATTTCTTAGACTGcaaacaaataactttttgtGTTTCCAACCGTT
TAAATTTTAAGTAATAGAATAATGTAAATATAATTCGGAAATAAATACTG
GTTGACTAAGTGGTGTAATTAATACTAGACGAGCAAATAGACAATCAAtg
aaaaacccaaaaaatgtaGACCAAACGATAGACCTGCAAAATACCTGAAA
AGACCATGAAGAACTGTTTAAATCGAATGCCAAACCTTACTTCTTTCTCC
TTTATTTCCAACAGGAATGAACCGAAACATGATGAGTCGCTTTCAAGGTC
CACAACTAAAGCGACCGCCAATGATGGGAGGTTACGGTAATAATATGATG
ACAAGCCCAATGACGCCCGACCCGCCCAACGGTCAGTTTAGTCCATACGG
ACCACCCGGTGGCATGAACAGATCTGGACCAGGATTTCCACCGCAGTATC
AGCAGCCGCCGCCCGGGTACAACGGAAATAATTTCAATGCAAATATGGGC
GGAGCAAATATGGGTGGGATGGGCGGTATGAATATGGGGATGAATAATAG
TATGGGAATGAGTGGAAATAATAGTATGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043725	XLOC_043725	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_516	supercontig	scaffold_516:229692..236221 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28324	0.476747	0.497747	0	4.95902	3.72564	2.31029	2.72565	2.35329	5.57188	3.1838	2.40815	3.24776	3.89701	4.28571	5.51992	9.10077	8.29747	3.24684	9.41877	3.99894	4.68336	2.50903	4.17787	5.43907	0.0196203	5.8228	5.70127	2.79968	5.23016

Blast

[Close]

BLAST of TCONS_00070202 vs. Swiss-Prot (Human)
Match: ZMIZ1 (Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.747e-34
Identity = 72/117 (61.54%), Postives = 92/117 (78.63%), Query Frame = 2

Query:  326 NMEQHIQQTNSRLQIIQRDLNNAATFQSAARELLDWCGDARAFQQSYEPNLMNCLTVVSKVASMQGYDLRLGYRLLAVCSAHKEKLSQKSSTILTQWSEELGRLLLLRHQNESNGKP 676
            +M++HIQQTN RLQ I++ L N A F +AA ELLDWCGD RAFQ+ +E +LM CLTVVS+VA+ QG+DL LGYRLLAVC+A+++K + KS+ +L+ W EELGRLLLLRHQ      P
Sbjct:    3 SMDRHIQQTNDRLQCIKQHLQNPANFHNAATELLDWCGDPRAFQRPFEQSLMGCLTVVSRVAAQQGFDLDLGYRLLAVCAANRDKFTPKSAALLSSWCEELGRLLLLRHQKSRQSDP 119

The following BLAST results are available for this feature:

BLAST of TCONS_00070202 vs. Swiss-Prot (Human)

BLAST of TCONS_00070202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZMIZ1	1.747e-34	61.54	Zinc finger MIZ domain-containing protein 1 OS=Hom...	[more]

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TCONS_00070202 (transcript) - C. hemisphaerica