TCONS_00070684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070684
Unique NameTCONS_00070684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070684 ID=TCONS_00070684|Name=TCONS_00070684|organism=Clytia hemisphaerica|type=transcript|length=1615bp
CCGCATAAAATCAAGATTACTGGAGGGTACACAAATTGACAAGtcgaaaa
aaaaacaaaaattaaaatcaataatGGATCGCAGAGATTTTTTGAATTCT
CCTGAGAAAAGTTGTGGAAGTTGGGCAAATGTGTTTGGTTCTCGGTGGAA
TTTAAATTTACATCAAATTAAAGACGGGCATGGGTTCAGTGACACAGGAC
AATTCCATACCATTAAACTTGACCCTAAAAACATGACCACTGATCTTAAA
GGTATGATTGCATTACATTACCAAAACGAAGAATCAAGTAAACTTGATTT
TTATGACATACAACTGTTTTCAGAAAGACCTGAAGTTATACTCTTATACG
ATGCCCGAATTTTGCGTTGGTTTAGTATTAGCAATACTTCAAACGGACAG
AACTTGCAAGTCCGAATTACCAGTGGTTCTGTAAGAGACCAGTTATCAAG
AAAAGGTGAAGATGACGATATTGTTATTATTGATGAATACATCGGTGACG
ATCATAATGTTCTTTTAACTTATGGTTTTCAGTCGAAGATTCACTTTTCC
AGTTTAAAACACCTTGACACTTTTGGTGATTTTATGGTCCTTCTTATTGG
AAACAATGATGGTTCTTTTGTATTAGACATTATAAAATATGATACTGATC
AGACAAACCATTACAAACGTGTAATTGTTCGTAAAAACACAATCAAATTT
AATCGCGAAGGTCTCAAAATggatattttcattgattttcttAACGATCG
ATTTTACGTTACGGAACTTCGTAACAAATTCAACCTTATCCATGGATTCG
ATTTTTGTGGACACTGTTTGTTTACGAAAGATTTATTGAAAGAGAAAACT
CGACGTATTAGACATATAAGTCAAATTGATAGCTCCAAGATGGTGATTGT
TTGGATTGGTACCAAGGATGTCTTATTTGAGGTTGAGACCTTCCATTTGA
TGGAGATAGGGCCTGTAAGATGGAAGAAATTCATTATCAATGTTAATATT
GAGAGTAACTACTGGCGTTCAcgcatttttgaaaattctggcAAATTCTA
CGTCATGGTTACAACAGGATCAAGAAAGTATAAGgaagaatttattttta
tttataatattttaacaGGTGTCAACATCCTTGAACACAAAGCAAATAAT
CGAAATGACATATATGATTTCAACAGGAATGGGTTTCAAGAAGTCGCTAT
GCTATGTTATGATTTTACTGATGTTGATGATTTTTATGAATATCCTGGTG
ATATTTATTACCATGCCGGTGATGACGACCCAAGGGAAAAGATTTTGAGC
ATTGATGTTGAGAATGTTAGTTATAAagccaaaagtttaaaaaatcaagC
ACGATTGGCGTGTTTAAAGTCCTTTGACGAGGCTTATTTAAAAGAGAAAT
TACATGCCAATCTCAAGATTTATCTCGGACTCGTGGAATCTTGAACTTTT
AGACTGTTTGTTGTAGTCTTTTCTACTATGAAGTTCGTGGATGAAAGTCA
AGGTAACTTTTAGGTATATAAGACATTCGTAGAAGACATAGTTGAAacac
tttattatttttttcttgttgttCATTTTTTGTGTAACTATTAGATGTGA
ATCAGCAAAATAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_57:477678..482859-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070684 ID=TCONS_00070684|Name=TCONS_00070684|organism=Clytia hemisphaerica|type=transcript|length=5182bp|location=Sequence derived from alignment at scaffold_57:477678..482859- (Clytia hemisphaerica)
CCGCATAAAATCAAGATTACTGGAGGGTACACAAATTGACAAGGTATTTT
ATCAAGTTTATATTACTGTCTGTCTGTCTGTCATTTTCTAAAAAGCAACG
TTTTTTTTGCTTTGTTTTATTCAAAAAATTGCAAAATAGAGAAAATGAAA
TCATTTTTCCGAAAACATTTTATCAGTCTTTCTTAACGGAATTCTTTTTT
AATCGAATAGAAAATGATGATAAATACGATTTGTTATTTCAATCCCGGCT
GATAGTCCGGGAGCCAAACCTGAAAAATGGCATTTTGCTTAACCCAAGAT
TCTACAGGGTAAACTATATATTTTTGGAATTTTCAGCTATCCTAGTTTAA
GAAATAGTCGGTCCACTCCCCAACCCTAATTCCTGGTCAATTTTTCATAC
TGGGCCCGAGTTTAGGGGGTACTTTTACCCTTTGTAAGGATTTGTTAAGG
AAAATATCTTTCCATGAGCACTTTTAGAAAGTAACTTTTTTATTCAATCG
AGCATAACTTTTGATCTAATAAACCAAATTTAATAAATGACCCATCAAAA
TCTAAGTTAATCTTTCTTCTTTACGGTGAAAAAAGATTCGTTCTCTCAAA
AATTTTAGATTTCGGGAAAGTTCACTCTAAAGAGAACAAGACGACTTAAA
GTCGAAAATTTCGCATAATACTTGAACATCAACCATTATGCATTTTGAAT
GAAGCGTTACACAAAATATACACAATGTATTGTACACACAGGCCATAGAT
ACCCGCTGTTTTTTTAATGAAAAATCTCAATCTATTAAAAAAAGATTCCT
TTAAGAGAACTGCAATATACTTGAGAAAAATAATTTTAAATTTTTTTGAA
AAGTAAGAAAAAAATATGAACTTTTCATTCTTTGATGCCAGGAACCTCAT
TTTGTGCTTTGAAGGAACTTGTGATAACGACTTCTTTCACTTGCGCTAAG
TTTATATCAACTTCTTTTTATAAACAGTAGAATTAATTTATCTAAAATTG
AGAAAAATGGCTAGTCAGAAAAATCTGTTGTATACTATCTTCGCTTTCTG
ATATGAATGATGGCCCACCACCATCAAAATCATTGGACTTTTTCAGAAAA
AATTTGAATATGGGGGGGGTGAAGGATAAAACCTTTTTTGGAAACCCCCC
CCCCCCTGGAAATTGTGACTTTTGATCGCCCGGACAGCAGGTCTAACCCT
CCCCGCCCCGGACAAGCATCAATTGATCCCATCGAGAGCAAGTTTACTTC
CCCCAGGACAAGGCAAATTTTGTAGATTTTTCACTACCCTCCCCTCCAGA
CACTATATCCTCCACCCCCATGTACAGAAGAGCCCATTAAAGGCAAAAAG
CAGTTGAGCACACTCATTTTTTTTATAAGCATACAGTAAATTTCGGCTGA
AGCTCACTATGCTTAAGTAAATCTCAATTTTTGATTGGTATAAAAATATG
TAAGTTTTAAGAGACCAAGTTGTGCTATTTGTAAGAGATTAAACAAAATA
AAATCACCAATTATTCGAATTTTGTTTGTAATTGTCTTCTTCATTCTTCT
GTTATTTTCTGAAGTTTGGGAGATTATGATTCTAAAATTTCCTCAAGGTA
TGCTTAGCATATGCTTAATTTTTCTGGAAATTTGAGCTTCAGTATGCTTA
TAAACGTTATGCTTATAAAAGAAAAATGAGTGTAGTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGTAGTTGAGCTCCAGG
TCCAGCTTCTGGACTAGAAAATTGCAAGGTAAAAACTAGCCAACTTTAAG
CTTTAAAGAAATAATACTCCTTGAGATTAAACTTTGACTCCTTTATAACT
GCTTTAAAACTGCATCCCATTAAACAAACCCTCCCCAATCTCTTGCCGAT
CATCCCGTGAAAAATATATAGGAGAAAGATTCCAGAAAAGTAACAAGAAT
CTTAGTGCGGAAATGGAAATCTTATGCAAACAACGTATCATGGTTCAAAA
TGAAAATCCTAATTAGCAAAAGGTGTATCAAGATCGGTGAAGTTTGATTG
AAGCTCGATTAGTTTGATTTATTACCTTGTTGCCCATTCTTTTTACATTC
CGAAGGTTTATTAGCAGACGCCCACGCTAAAGCTTAAAGAGCGAGCCAAT
ATCTATCATCCCATCGGGGAGGAAAAGCTGGAACTTTTACTAACCAAACT
CATCGAACACCAATCAAACTTCATCGGATAAAAAACTGTCATCATTAACG
AGGGACCGCTGTACATTGTGCGTTGGTGTAGGGTGGGGCTGGATCTAAAT
GTCCTTTTTGTACGGCGATGAAAATAGGTTAATTTGAAATCTACAGTATT
ATCTGTACACCCCACCTTACCCACCATAAATCACCGTACAATGACAATGT
ACGGCAGTGTCTAGGCAGGCTCGTTTTGGTTATACAAAAATGATTGCTGA
ATTTCAGTCAGTCATTTGATGGCTGTGCAAGTTACCCTCCACTGAGGACG
ACGGTGAGCCGACGGTGTCGGCTTTTTGTAATCACCTTACAAATTATAAA
GTAGCGTTGACTTTTATTAGCCTTGTTGCTACCTGTTCGTCAACTTGAAA
TAAACTATTACATACATACATACTGATGCAAGTTACCCGACTTCACAGTA
CTTGCTAAAACTGACTGTTTGTCACAGNCATGTGCAATCAAGCAGCCATT
AAAAGTTCTCACGATGAATGTTTACAAAGGCTTGGTTACACTTCTTGCAC
TAGCGTATTTTATTTATTAATAAAAGCCCTGTTTTTTATCACTTTTTATC
TTTGTGAGTGAGTCCACTTTTAGAATATTTGCCGTAGTACGCCCGCAGCC
AAACGCCCACGCCATAAACTTCGCCCCAAAAATATTCTCCCCCGCCGCCG
CAGAAAGGCTATCGTAATACTTTCGCTAAGCGAAATTAATAAATTTTTTG
TGGCGCACCCGGTGTAATTTGCTATATTTCATGAATTAAACGTTGTCCAG
ATCATTCAGGTTATGGAAAGGGGTCTGTAGTTGTTATCTGGCTTTCTTAC
CATAACAGTAAAAGAAAAGATTTAGAGCCTAATCGCACGATGAGTTTTTT
TTTCTCATTTGGCGCGCCTTCAAAGAGAGCAATTAATCGTTAATTGCATC
ATGTAGAGAGCAATTAATCGTTAATCACACTCTTCAATGCCGTGCCAATG
TTTACAAAATTGATTTTAATGTTTTTTCTTACATCTTTTTTTGCATCGAA
CGTTTTAATTGCATTCGAAATTCATTTTATGAGAAAGAAAATCAATAAAC
AACAATAAAAGAAAAACACAGAGAGCAGATAAAGATATAAAACTCTCGGT
TTAATTTCTGTAATTTACTTTCCTAACTGGGAAAAAGTAGTGAAAGCCAT
TGTGCGATTAGCTCGTAATCACATAACAACTCGTACAATTCGAAAATTGC
AATCGTGATTTTTTTGTTTCGAATTTTCCTCGTCCTTTCGGACTCGGAAA
ATTAATAGCAAAAAAATCACTCGTGCAATTATATTCGAATTGCACTCGTT
ATCATGTGATTACATATACAAATCCTTTTGATAAAACATTTTCTTTTTCT
CTTTTTTTAGTCGAAAAAAAAACAAAAATTAAAATCAATAATGGATCGCA
GAGATTTTTTGAATTCTCCTGAGAAAAGTTGTGGAAGTTGGGCAAATGTG
TTTGGTTCTCGGTGGAATTTAAATTTACATCAAATTAAAGACGGGCATGG
GTTCAGTGACACAGGACAATTCCATACCATTAAACTTGACCCTAAAAACA
TGACCACTGATCTTAAAGGTATGATTGCATTACATTACCAAAACGAAGAA
TCAAGTAAACTTGATTTTTATGACATACAACTGTTTTCAGAAAGACCTGA
AGTTATACTCTTATACGATGCCCGAATTTTGCGTTGGTTTAGTATTAGCA
ATACTTCAAACGGACAGAACTTGCAAGTCCGAATTACCAGTGGTTCTGTA
AGAGACCAGTTATCAAGAAAAGGTGAAGATGACGATATTGTTATTATTGA
TGAATACATCGGTGACGATCATAATGTTCTTTTAACTTATGGTTTTCAGT
CGAAGATTCACTTTTCCAGTTTAAAACACCTTGACACTTTTGGTGATTTT
ATGGTCCTTCTTATTGGAAACAATGATGGTTCTTTTGTATTAGACATTAT
AAAATATGATACTGATCAGACAAACCATTACAAACGTGTAATTGTTCGTA
AAAACACAATCAAATTTAATCGCGAAGGTCTCAAAATGGATATTTTCATT
GATTTTCTTAACGATCGATTTTACGTTACGGAACTTCGTAACAAATTCAA
CCTTATCCATGGATTCGATTTTTGTGGACACTGTTTGTTTACGAAAGATT
TATTGAAAGAGAAAACTCGACGTATTAGACATATAAGTCAAATTGATAGC
TCCAAGATGGTGATTGTTTGGATTGGTACCAAGGATGTCTTATTTGAGGT
TGAGACCTTCCATTTGATGGAGATAGGGCCTGTAAGATGGAAGAAATTCA
TTATCAATGTTAATATTGAGAGTAACTACTGGCGTTCACGCATTTTTGAA
AATTCTGGCAAATTCTACGTCATGGTTACAACAGGATCAAGAAAGTATAA
GGAAGAATTTATTTTTATTTATAATATTTTAACAGGTGTCAACATCCTTG
AACACAAAGCAAATAATCGAAATGACATATATGATTTCAACAGGAATGGG
TTTCAAGAAGTCGCTATGCTATGTTATGATTTTACTGATGTTGATGATTT
TTATGAATATCCTGGTGATATTTATTACCATGCCGGTGATGACGACCCAA
GGGAAAAGATTTTGAGCATTGATGTTGAGAATGTTAGTTATAAAGCCAAA
AGTTTAAAAAATCAAGCACGATTGGCGTGTTTAAAGTCCTTTGACGAGGC
TTATTTAAAAGAGAAATTACATGCCAATCTCAAGATTTATCTCGGACTCG
TGGAATCTTGAACTTTTAGACTGTTTGTTGTAGTCTTTTCTACTATGAAG
TTCGTGGATGAAAGTCAAGGTAACTTTTAGGTATATAAGACATTCGTAGA
AGACATAGTTGAAACACTTTATTATTTTTTTCTTGTTGTTCATTTTTTGT
GTAACTATTAGATGTGAATCAGCAAAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043974XLOC_043974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070684-exon-scaffold_57-1575043694:482817..482859TCONS_00070684-exon-scaffold_57-1575043694:482817..482859Clytia hemisphaericaexon
TCONS_00070684-exon-scaffold_57-1575043694:477678..479249TCONS_00070684-exon-scaffold_57-1575043694:477678..479249Clytia hemisphaericaexon
TCONS_00070684-exon-scaffold_57-1510915933:482817..482859TCONS_00070684-exon-scaffold_57-1510915933:482817..482859Clytia hemisphaericaexon
TCONS_00070684-exon-scaffold_57-1510915933:477678..479249TCONS_00070684-exon-scaffold_57-1510915933:477678..479249Clytia hemisphaericaexon
TCONS_00070684-exon-scaffold_57-1491911889:482817..482859TCONS_00070684-exon-scaffold_57-1491911889:482817..482859Clytia hemisphaericaexon
TCONS_00070684-exon-scaffold_57-1491911889:477678..479249TCONS_00070684-exon-scaffold_57-1491911889:477678..479249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:477678..482859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.0543	40.0098	17.285	14.2273	6.22717	4.35611	6.16382	5.92234	3.7211	4.31947	4.14145	2.15105	2.21519	1.82994	2.47878	3.16753	3.31492	3.82482	1.47528	1.4315	4.46461	3.35577	37.0616	28.5653	2.51952	3.45755	8.2001	7.86516	20.1649	25.8808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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