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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070739 ID=TCONS_00070739|Name=TCONS_00070739|organism=Clytia hemisphaerica|type=transcript|length=2757bp
NNCATAACAAAGAACATGCAAATTCCTATGAATAAACAacatttgttttt
taataaCAGTGCTTTTTACGATAACCGTGATGGTCGTAGTGATGGATTAG
AAAAAGTTGTATTGGAAAGTCACCTGGCAAATGATCAGGAGACATCTTTT
ATTGATTTTCGTTTAATTGTCCAGGCTGATGACGAGGATAAGAAATTATT
GAAAGCTATTAAAGATTACAATCTTAGTAGAAGTCGGTCACTTATTGTGA
AACATCCATGCGCTGATACCATTTTCTATGAAACATCACTATCAACATTT
CAGTCACAAAGTATAACATGTGAAGAAATTTCCAAATTGCATCCTCAACT
TTCAACTGAGGTTTTTTGTTTACTCCACAAGGGTGAACAATTTGAAGACC
CAGCAGATATTCGTGAATTTATGTTGCAAGAGGATGTTTTCAGTGAGAAC
CTCATTTTAACGTTAGTAATTAAACCAAGCTCTGATGAAAAAGTTGCAAA
ATTCTGTCAAGAACacgatttgaaatttttgaaagagattaaaattcatt
tcttgaCAGGTCAATTTACAATCGATATCACATCTGGGGGTATTGAAAAT
GTAGAGGATTTAAAAAGGGTGATTTACGAAAACAAAACTGTAGCCCCACA
TTTGCAGGTTTTatacaaagaaaatcaaaatgtgGAAATTgataataaat
ttgatttgattgctGCCAACAATCTAATGACAGCGGAATCATTCACTTTT
AAACTTGTTGTGCAGGATGGTGATGAATTAAAGCTAACTTTCAAATGTAC
CTTCATGGAGGAGCCATTTGAAGCTACTGTCAGAGAGGTGACCACTATTG
AGGAAATCAAAGCAATGATTAGTGAAAAATCAGGAATCCCTATATCGCTT
ATAAGCTTTGATTTAGCTTACACTCTGGATAGAGAGAAATTACCAGTATG
GGAGTACttcaaaacctttaataaattttgtagtaCCAATATTTATGTGA
CAAAACGTGTTAAAATATCGATCAATAAAGATGGTGTGGTTTTCAAGGGT
TTTAGTCCCATTCGAAACTACAAAACTGACACTCTCAAGGAGCTCTATAA
ACGAATGGAGCTTTTGAATCCGGGATGTGATGTATCAATGCAAGAAAATG
GTTTAGCATATGATACCTTGTTGAATGAAGTTGGCGAACAAGagattatt
tttcttatcaCTTCTCAGAAGAAAAGAGTTACTGGTTCAACTATAGACAA
CAACAAATGTTTAATTTCAtgattaaatattttgacataattgaatttta
aatttaagtCTTGACAATTGATTTATTAGTTTTAGAAAggtgtttttaaa
taagagtgatattttttgcttactcatcaattttattttacaagCCTTTT
CACAGAATTGTCGCAGATGTGGAGCAGGGTAGGCCAGAGaggggaaaaga
aaaacaattttttgtttattcgcacaatataacaatacgGACAcattgtc
ctgatatgaaacatgtgtctgagtTATGGAAGCtttcagattattttttt
ttttaattttcagattttcagctTAAAAAACCTTTAGATGCTTTTCATTC
TAAACCACtagttattttttgttgagataTTTAGATATCTAAAGTTTAGA
CGTAGTTCAcgcaaatacacgtttttaataagaacatatAAGGCTTTAAA
ATTTAAAGAACAGGCTatgaacatttgaaggctttctggactcacaaaat
ggttaaaataagaacattttcaaggcttaaaaatcaaagaGTTAACAACA
TCAGAACGCTTAAAATTTTgactgtttttataaaaatgtgtattttaaat
TGCATAATATACATACCTGATACCTTTTTGTATGATttctatatttattt
tttgtaaaatttacaatttgCACAATGTATAATAGTTAAATAACTCTATA
CAGTTTATTTTAAGCAATATTATTCCTCAGTATACTATACAggttatttt
tcataaatttttctaccgggtgacccagaaaaaagtataagtgtttttgg
actttttcaaaaggaaattttgaCTTTAGAAGCTTTTAACTTGAGAACCA
CCgaaccaaattaaaaaaattatcaaattttaagtttaccTTTCCTCTTT
ACAATGACAAGAGAATTCATTGAAAGTTCACATTATTTCGGACGCAGTTA
GCCATcaaactcttatactttttttctgggtcacccggtagacATTGCAT
ATATCAATATCAATATTCATATATCATATATCAAAATCactatatcaata
cttttctttttctgcaatgacagatattacatatcttcccTATATCTTTA
ATTACAGAATTTCCAGGTGAAGAGCCAAATGTAAGTTTTGGAAATGTTAT
TATCAATATTATTGTTGGTAAATTATTTTAAGAGTTTTAGTTAAAATAGA
TCTCAGGATCTTCAAAATTAtgaataataaataatttttcactttttgtt
ttcctaaataagtaatagttatcgggcagttgcgagtacaatatgagaaa
tattttacgagttccgagatatttccggaaaatccggaacgagtgaaata
tttccatattgtacgagcaaatgtctgataactggtttatcggtgaccca
aaaaatgcacttttgtgttagaaaaaagcgcagggcacttttgtagtgCA
AAGTGACGTTACcttagattgcttctaccgctactACAATgtaacaacat
cttttcg Run BLAST on NCBI protein sequence of TCONS_00070739-protein >TCONS_00070739-protein ID=TCONS_00070739-protein|Name=TCONS_00070739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
XITKNMQIPMNKQHLFFNNSAFYDNRDGRSDGLEKVVLESHLANDQETSF
IDFRLIVQADDEDKKLLKAIKDYNLSRSRSLIVKHPCADTIFYETSLSTF
QSQSITCEEISKLHPQLSTEVFCLLHKGEQFEDPADIREFMLQEDVFSEN
LILTLVIKPSSDEKVAKFCQEHDLKFLKEIKIHFLTGQFTIDITSGGIEN
VEDLKRVIYENKTVAPHLQVLYKENQNVEIDNKFDLIAANNLMTAESFTF
KLVVQDGDELKLTFKCTFMEEPFEATVREVTTIEEIKAMISEKSGIPISL
ISFDLAYTLDREKLPVWEYFKTFNKFCSTNIYVTKRVKISINKDGVVFKG
FSPIRNYKTDTLKELYKRMELLNPGCDVSMQENGLAYDTLLNEVGEQEII
FLITSQKKRVTGSTIDNNKCLIS Run BLAST on NCBI transcript from alignment at scaffold_57:484755..487511 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070739 ID=TCONS_00070739|Name=TCONS_00070739|organism=Clytia hemisphaerica|type=transcript|length=2757bp|location=Sequence derived from alignment at scaffold_57:484755..487511 (Clytia hemisphaerica)
cgaaaagatgttgttacATTGTagtagcggtagaagcaatctaagGTAAC
GTCACTTTGcactacaaaagtgccctgcgcttttttctaacacaaaagtg
cattttttgggtcaccgataaaccagttatcagacatttgctcgtacaat
atggaaatatttcactcgttccggattttccggaaatatctcggaactcg
taaaatatttctcatattgtactcgcaactgcccgataactattacttat
ttaggaaaacaaaaagtgaaaaattatttattattcaTAATTTTGAAGAT
CCTGAGATCTATTTTAACTAAAACTCTTAAAATAATTTACCAACAATAAT
ATTGATAATAACATTTCCAAAACTTACATTTGGCTCTTCACCTGGAAATT
CTGTAATTAAAGATATAgggaagatatgtaatatctgtcattgcagaaaa
agaaaagtattgatatagtGATTTTGATATATGATATATGAATATTGATA
TTGATATATGCAATgtctaccgggtgacccagaaaaaaagtataagagtt
tgATGGCTAACTGCGTCCGAAATAATGTGAACTTTCAATGAATTCTCTTG
TCATTGTAAAGAGGAAAggtaaacttaaaatttgataatttttttaattt
ggttcGGTGGTTCTCAAGTTAAAAGCTTCTAAAGtcaaaatttccttttg
aaaaagtccaaaaacacttatacttttttctgggtcacccggtagaaaaa
tttatgaaaaataaccTGTATAGTATACTGAGGAATAATATTGCTTAAAA
TAAACTGTATAGAGTTATTTAACTATTATACATTGTGcaaattgtaaatt
ttacaaaaaataaatatagaaATCATACAAAAAGGTATCAGGTATGTATA
TTATGCAatttaaaatacacatttttataaaaacagtcAAAATTTTAAGC
GTTCTGATGTTGTTAACtctttgatttttaagccttgaaaatgttcttat
tttaaccattttgtgagtccagaaagccttcaaatgttcatAGCCTGTTC
TTTAAATTTTAAAGCCTTatatgttcttattaaaaacgtgtatttgcgTG
AACTACGTCTAAACTTTAGATATCTAAAtatctcaacaaaaaataactaG
TGGTTTAGAATGAAAAGCATCTAAAGGTTTTTTAagctgaaaatctgaaa
attaaaaaaaaaaataatctgaaaGCTTCCATAactcagacacatgtttc
atatcaggacaatgTGTCcgtattgttatattgtgcgaataaacaaaaaa
ttgtttttcttttcccctCTCTGGCCTACCCTGCTCCACATCTGCGACAA
TTCTGTGAAAAGGcttgtaaaataaaattgatgagtaagcaaaaaatatc
actcttatttaaaaacaccTTTCTAAAACTAATAAATCAATTGTCAAGac
ttaaatttaaaattcaattatgtcaaaatatttaatcaTGAAATTAAACA
TTTGTTGTTGTCTATAGTTGAACCAGTAACTCTTTTCTTCTGAGAAGtga
taagaaaaataatctCTTGTTCGCCAACTTCATTCAACAAGGTATCATAT
GCTAAACCATTTTCTTGCATTGATACATCACATCCCGGATTCAAAAGCTC
CATTCGTTTATAGAGCTCCTTGAGAGTGTCAGTTTTGTAGTTTCGAATGG
GACTAAAACCCTTGAAAACCACACCATCTTTATTGATCGATATTTTAACA
CGTTTTGTCACATAAATATTGGtactacaaaatttattaaaggttttgaa
GTACTCCCATACTGGTAATTTCTCTCTATCCAGAGTGTAAGCTAAATCAA
AGCTTATAAGCGATATAGGGATTCCTGATTTTTCACTAATCATTGCTTTG
ATTTCCTCAATAGTGGTCACCTCTCTGACAGTAGCTTCAAATGGCTCCTC
CATGAAGGTACATTTGAAAGTTAGCTTTAATTCATCACCATCCTGCACAA
CAAGTTTAAAAGTGAATGATTCCGCTGTCATTAGATTGTTGGCagcaatc
aaatcaaatttattatcAATTTCcacattttgattttctttgtatAAAAC
CTGCAAATGTGGGGCTACAGTTTTGTTTTCGTAAATCACCCTTTTTAAAT
CCTCTACATTTTCAATACCCCCAGATGTGATATCGATTGTAAATTGACCT
GtcaagaaatgaattttaatctctttcaaaaatttcaaatcgtGTTCTTG
ACAGAATTTTGCAACTTTTTCATCAGAGCTTGGTTTAATTACTAACGTTA
AAATGAGGTTCTCACTGAAAACATCCTCTTGCAACATAAATTCACGAATA
TCTGCTGGGTCTTCAAATTGTTCACCCTTGTGGAGTAAACAAAAAACCTC
AGTTGAAAGTTGAGGATGCAATTTGGAAATTTCTTCACATGTTATACTTT
GTGACTGAAATGTTGATAGTGATGTTTCATAGAAAATGGTATCAGCGCAT
GGATGTTTCACAATAAGTGACCGACTTCTACTAAGATTGTAATCTTTAAT
AGCTTTCAATAATTTCTTATCCTCGTCATCAGCCTGGACAATTAAACGAA
AATCAATAAAAGATGTCTCCTGATCATTTGCCAGGTGACTTTCCAATACA
ACTTTTTCTAATCCATCACTACGACCATCACGGTTATCGTAAAAAGCACT
GttattaaaaaacaaatgtTGTTTATTCATAGGAATTTGCATGTTCTTTG
TTATGNN Coding sequence (CDS) from alignment at scaffold_57:484755..487511 >TCONS_00070739 ID=TCONS_00070739|Name=TCONS_00070739|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_57:484755..487511 (Clytia hemisphaerica)
tcaTGAAATTAAACATTTGTTGTTGTCTATAGTTGAACCAGTAACTCTTT
TCTTCTGAGAAGtgataagaaaaataatctCTTGTTCGCCAACTTCATTC
AACAAGGTATCATATGCTAAACCATTTTCTTGCATTGATACATCACATCC
CGGATTCAAAAGCTCCATTCGTTTATAGAGCTCCTTGAGAGTGTCAGTTT
TGTAGTTTCGAATGGGACTAAAACCCTTGAAAACCACACCATCTTTATTG
ATCGATATTTTAACACGTTTTGTCACATAAATATTGGtactacaaaattt
attaaaggttttgaaGTACTCCCATACTGGTAATTTCTCTCTATCCAGAG
TGTAAGCTAAATCAAAGCTTATAAGCGATATAGGGATTCCTGATTTTTCA
CTAATCATTGCTTTGATTTCCTCAATAGTGGTCACCTCTCTGACAGTAGC
TTCAAATGGCTCCTCCATGAAGGTACATTTGAAAGTTAGCTTTAATTCAT
CACCATCCTGCACAACAAGTTTAAAAGTGAATGATTCCGCTGTCATTAGA
TTGTTGGCagcaatcaaatcaaatttattatcAATTTCcacattttgatt
ttctttgtatAAAACCTGCAAATGTGGGGCTACAGTTTTGTTTTCGTAAA
TCACCCTTTTTAAATCCTCTACATTTTCAATACCCCCAGATGTGATATCG
ATTGTAAATTGACCTGtcaagaaatgaattttaatctctttcaaaaattt
caaatcgtGTTCTTGACAGAATTTTGCAACTTTTTCATCAGAGCTTGGTT
TAATTACTAACGTTAAAATGAGGTTCTCACTGAAAACATCCTCTTGCAAC
ATAAATTCACGAATATCTGCTGGGTCTTCAAATTGTTCACCCTTGTGGAG
TAAACAAAAAACCTCAGTTGAAAGTTGAGGATGCAATTTGGAAATTTCTT
CACATGTTATACTTTGTGACTGAAATGTTGATAGTGATGTTTCATAGAAA
ATGGTATCAGCGCATGGATGTTTCACAATAAGTGACCGACTTCTACTAAG
ATTGTAATCTTTAATAGCTTTCAATAATTTCTTATCCTCGTCATCAGCCT
GGACAATTAAACGAAAATCAATAAAAGATGTCTCCTGATCATTTGCCAGG
TGACTTTCCAATACAACTTTTTCTAATCCATCACTACGACCATCACGGTT
ATCGTAAAAAGCACTGttattaaaaaacaaatgtTGTTTATTCATAGGAA
TTTGCATGTTCTTTGTTATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070739-exon-scaffold_57-1491911889:484755..487511 | TCONS_00070739-exon-scaffold_57-1491911889:484755..487511 | Clytia hemisphaerica | exon |
| TCONS_00070739-exon-scaffold_57-1510915933:484755..487511 | TCONS_00070739-exon-scaffold_57-1510915933:484755..487511 | Clytia hemisphaerica | exon |
| TCONS_00070739-exon-scaffold_57-1575043694:484755..487511 | TCONS_00070739-exon-scaffold_57-1575043694:484755..487511 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:484755..487511 . |
Blast
The following BLAST results are available for this feature:
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