TCONS_00070693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070693
Unique NameTCONS_00070693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070693 ID=TCONS_00070693|Name=TCONS_00070693|organism=Clytia hemisphaerica|type=transcript|length=1900bp
CACCATATCGATTCACCAGCAATGCCAGCGATAAACCAATCAGTGTTTGC
AACACATCATTTCTTGATTCATTACCAGTCTTTATGAGAAAACTTTCAAG
GATTTCAAAATCCTCTGCTAAATCACTTTTGTTCGATTTGTATAAAGCAC
AAAATACTATAAAAATGTCTTTGAATGATATATTCGTTGACTCTTGGATT
GAGTTTTTAACTTCGTTGATCAGCTCTCTTTGAAGGGTTTCTGGTAGATT
GTTAAAAACACAGACCATAATTCTACTAAAGCCCCATAAATGACTATGTT
TGAGGAAACCTTGTCTCGAGCTAACACTCTCAATAAGGAGGTCCAGAAAA
TCAGTTCTGGTGTATGCTGTCTTTGATTTGGTAAGTAATTCACAAAAACT
AGAAACAAATTTATCGAATATTTCCACGTTTTCAGAATCAATTAAAGGTA
AAATCATCTTGATCAGATATTTCAAAATGGCAGCTTCGTCATCTTGAGAA
CAATGCGATAACAATGGTATATAAACAACAGCTTTTTCAGAATCTAATTG
CTGGAGAGGAGCCAAAAACTTCTCTCTTATGTGTGATGGATAATGAATCC
ATAATACTCTCATGAAATCATTGACTGGTTCTGTTGGGCATTTCTTGACT
TTGTTGAATAGcatgttgaaaaaatgttgggATATCAGTTCGGCATCAAC
AATGGTTGAAACGTCTGTTAGCAAATTTTGTACTTCCATGATCTTAGCTA
AACATGTAACTGAAGCATTTGTTAGCTTAGTATTCTCGTCTCCTTTTAAA
CTCTCGAATAATACTGATGACATGCTTCCAGCAAACTCCAAATACTGTTG
ACGCAAATCAGGAGAAACACCAGAGATGTCGATGGAAAGTAAATAATGTG
CAAATTCTAAACAAGTAGCACATTGGTTAGGTGATAGATTTTTCTGTAGT
ACTGTTTCAGTTGGTTGTAACAAACTTTTGAGTATAGTTTCATCAACTAT
CGGAGAAGCATTTGCAAATACGGAGATCAGTCTTCCACACTGTTCTGCAA
TTGACATATCAGGATCCTTTAAGCTTTGACAGCAATCTTTCATGAAGTTC
TCCATTAAATGATTCAATTCGGTCTTATCTTCTAGGACTGCTAAAGATGC
AACAAATTTCCggataaatttttcataatCTCTTTTCAGGTCTTCATCTT
CACTGAATAAGAAATCTTTTCGAATACTCATCCATATATCTTTAACAAAA
AGTTGTAGATGGGGTCCAGCTTCTGACAGAATATCGGTCATTATAGCCAG
AGAGTCTCTCTTAGCTTCGGTCATGTCTGAAGACAGTTTCTCAATGAACA
AGGGTATACTATAAGGGGCAAACGCAGATGTTGAACATAAACATTTGTGT
AGGTTCCCAACTAATTGTTCTCTGGTAACACCGTAGTCATTCTCTTTAGG
TGGGTTAAATTCTACTGGAAAGTAACAAGATAACACTTCAAAGAAATCTT
CAACAAACAATGAAATATCAAGCTCTTTCAAAACAATGCATGAATTTTGG
AAACACAAGACCAGATTACGTGGATCTCTTTCACCGTCTATCGCTTGTAT
AAATCCAAAAACAAAATCGGAtgaaatttgtttcaaaatgttcaatttca
attttaaaaggttcccaaacaagttaaaaacattgtAACGATCAGCCTGT
AccaatgactgaacatgaactTCAGCAAAAATTGCCCTGATCATCTGCAG
GATGAGAGGCTCAGGTACAGGATGATGGGAAACAAGCCCTAAGAAACCAT
AGATAACTAAGGGTTGTATTTTATGGTGGTCTTTCAGTCTGTCACATAAG
AACAGCATCATGGTTTCTATCTCCTTTTCCAGTAATTCATTCGGTCTgca
Run BLAST on NCBI

transcript from alignment at scaffold_57:571897..575006-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070693 ID=TCONS_00070693|Name=TCONS_00070693|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at scaffold_57:571897..575006- (Clytia hemisphaerica)
CACCATATCGATTCACCAGCAATGCCAGCGATAAACCAATCAGTGTTTGC
AACACATCATTTCTTGATTCATTACCAGTCTTTATGAGAAAACTTTCAAG
GATTTCAAAATCCTCTGCTAAATCACTTTTGTTCGATTTGTATAAAGCAC
AAAATACTATAAAAATGTCTTTGAATGATATATTCGTTGACTCTTGGATT
GAGTTTTTAACTTCGTTGATCAGCTCTCTTTGAAGGGTTTCTGGTAGATT
GTTAAAAACACAGACCATAATTCTACTAAAGCCCCATAAATGACTATGTT
TGAGGAAACCTTGTCTCGAGCTAACACTCTCAATAAGGAGGTCCAGAAAA
TCAGTTCTGGTGTATGCTGTCTTTGATTTGGTAAGTAATTCACAAAAACT
AGAAACAAATTTATCGAATATTTCCACGTTTTCAGAATCAATTAAAGGTA
AAATCATCTTGATCAGATATTTCAAAATGGCAGCTTCGTCATCTTGAGAA
CAATGCGATAACAATGGTATATAAACAACAGCTTTTTCAGAATCTAATTG
CTGGAGAGGAGCCAAAAACTTCTCTCTTATGTGTGATGGATAATGAATCC
ATAATACTCTCATGAAATCATTGACTGGTTCTGTTGGGCATTTCTTGACT
TTGTTGAATAGCATGTTGAAAAAATGTTGGGATATCAGTTCGGCATCAAC
AATGGTTGAAACGTCTGTTAGCAAATTTTGTACTTCCATGATCTTAGCTA
AACATGTAACTGAAGCATTTGTTAGCTTAGTATTCTCGTCTCCTTTTAAA
CTCTCGAATAATACTGATGACATGCTTCCAGCAAACTCCAAATACTGTTG
ACGCAAATCAGGAGAAACACCAGAGATGTCGATGGAAAGTAAATAATGTG
CAAATTCTAAACAAGTAGCACATTGGTTAGGTGATAGATTTTTCTGTAGT
ACTGTTTCAGTTGGTTGTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCTGCTCGAAGTTTCCTGAAATCGAGCAAATTTGTGTTCCCCTTG
TGTTCGAATTATGGAAACTCCATTGTACAAACACATCAAACAAACAAAGA
GTATTCTTACCACCATATCGATTCACCAGCAATGCCAGCGATAAACCAAT
CAGTGTTTGCAACACATCATTTCTTGATTCATTACCAGTCTTTATGAGAA
AACTTTCAAGGATTTCAAAATCCTCTGCTAAATCACTTTTGTTCGATTTG
TATAAAGCACAAAATACTATAAAAATGTCTTTGAATGATATATTCGTTGA
CTCTTGGATTGAGTTTTTAACTTCGTTGATCAGCTCTCTTTGAAGGGTTT
CTGGTAGATTGTTAAAAACACAGACCATAATTCTACTAAAGCCCCATAAA
TGACTATGTTTGAGGAAACCTTGTCTCGAGCTAACACTCTCAATAAGGAG
GTCCAGAAAATCAGTTCTGGTGTATGCTGTCTTTGATTTGGTAAGTAATT
CACAAAAACTAGAAACAAATTTATCGAATATTTCCACGTTTTCAGAATCA
ATTAAAGGTAAAATCATCTTGATCAGATATTTCAAAATGGCAGCTTCGTC
ATCTTGGGAACAATGCGATAACAATGGTATATAAACAACAGCTTTTTCAG
AATCTAATTGCTGGAGAGGAGCCAAAAACTTCTCTCTTATGTGTGATGGA
TAATGAATCCATAATACTCTCATGAAATCATTGACTGGTTCTGTTGGGCA
TTTCTTGACTTTGTTGAATAGCATGTTGAAAAAATGTTGGGATATCAGTT
CGGCATCAACAATGGTTGAAACGTCTGTTAGCAAATTTTGTACTTCCATG
ATCTTAGCTAAACATGTAACTGAAGCATTTGTTAGCTTAGTATTCTCGTC
TCCTTTTAAACTCTCGAATAATACTGATGACATGCTTCCAGCAAACTCCA
AATACTGTTGACGCAAATCAGGAGAAACACCAGAGATGTCGATGGAAAGT
AAATAATGTGCAAATTCTAAACAAGTAGCACATTGGTTAGGTGATAGATT
TTTCTGCAGTGCTGTTTCAGTTGGTTGTAACAAACTTTTGAGTATAGTTT
CATCAACTATCGGAGAAGCATTTGCAAATACGGAGATCAGTCTTCCACAC
TGTTCTGCAATTGACATATCAGGATCCTTTAAGCTTTGACAGCAATCTTT
CATGAAGTTCTCCATTAAATGATTCAATTCGGTCTTATCTTCTAGGACTG
CTAAAGATGCAACAAATTTCCGGATAAATTTTTCATAATCTCTTTTCAGG
TCTTCATCTTCACTGAATAAGAAATCTTTTCGAATACTCATCCATATATC
TTTAACAAAAAGTTGTAGATGGGGTCCAGCTTCTGACAGAATATCGGTCA
TTATAGCCAGAGAGTCTCTCTTAGCTTCGGTCATGTCTGAAGACAGTTTC
TCAATGAACAAGGGTATACTATAAGGGGCAAACGCAGATGTTGAACATAA
ACATTTGTGTAGGTTCCCAACTAATTGTTCTCTGGTAACACCGTAGTCAT
TCTCTTTAGGTGGGTTAAATTCTACTGGAAAGTAACAAGATAACACTTCA
AAGAAATCTTCAACAAACAATGAAATATCAAGCTCTTTCAAAACAATGCA
TGAATTTTGGAAACACAAGACCAGATTACGTGGATCTCTTTCACCGTCTA
TCGCTTGTATAAATCCAAAAACAAAATCGGATGAAATTTGTTTCAAAATG
TTCAATTTCAATTTTAAAAGGTTCCCAAACAAGTTAAAAACATTGTAACG
ATCAGCCTGTACCAATGACTGAACATGAACTTCAGCAAAAATTGCCCTGA
TCATCTGCAGGATGAGAGGCTCAGGTACAGGATGATGGGAAACAAGCCCT
AAGAAACCATAGATAACTAAGGGTTGTATTTTATGGTGGTCTTTCAGTCT
GTCACATAAGAACAGCATCATGGTTTCTATCTCCTTTTCCAGTAATTCAT
TCGGTCTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043978XLOC_043978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070693-exon-scaffold_57-1575043694:574036..575006TCONS_00070693-exon-scaffold_57-1575043694:574036..575006Clytia hemisphaericaexon
TCONS_00070693-exon-scaffold_57-1575043694:571897..572825TCONS_00070693-exon-scaffold_57-1575043694:571897..572825Clytia hemisphaericaexon
TCONS_00070693-exon-scaffold_57-1510915933:574036..575006TCONS_00070693-exon-scaffold_57-1510915933:574036..575006Clytia hemisphaericaexon
TCONS_00070693-exon-scaffold_57-1510915933:571897..572825TCONS_00070693-exon-scaffold_57-1510915933:571897..572825Clytia hemisphaericaexon
TCONS_00070693-exon-scaffold_57-1491911889:574036..575006TCONS_00070693-exon-scaffold_57-1491911889:574036..575006Clytia hemisphaericaexon
TCONS_00070693-exon-scaffold_57-1491911889:571897..572825TCONS_00070693-exon-scaffold_57-1491911889:571897..572825Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:571897..575006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53347	1.67425	1.93305	1.38778	2.67089	4.0121	2.16752	2.33803	0	0.972801	0.952486	0.271634	1.82546e-05	0	0.738896	1.11236	2.24327	2.22185	0	0.64442	2.16013	1.82336	3.51121	4.97113	0.240927	1.52127	0.246271	8.07495e-08	4.28061	3.66257
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
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BLAST of TCONS_00070693 vs. Swiss-Prot (Human)
Match: MMS19 (MMS19 nucleotide excision repair protein homolog OS=Homo sapiens GN=MMS19 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 4.669e-52
Identity = 138/419 (32.94%), Postives = 223/419 (53.22%), Query Frame = -1 
Query:  650 LLEKEIETMMLFLCDRLKDHHKIQPLVIYGFLGLVSHHPVPEPLILQMIRAIFAEVHVQSLVQADRYNVFXXXXXXXXXXXXXXKQISSDFVFGFIQAIDGERDPRNLVLCFQ-NSCIVLKELDISLFVEDFFEVLSCYFPVEFNPPKENDYGVTREQLVGNLHKCLCSTSAFAPYSIPLFIEKLSSDMTEAKRDSLAIMTDILSEAG-PHLQLFVKDIWMSIRKDFLFSEDEDLKRDYEKFIRKFVASL--AVLEDKTE--LNHLMENFMKDCCQSLKDPDMSIAEQCGRLISVFANASPIVDETILKSLLQPTETVLQKNLSPNQCATCLEFAHYLLSIDISGVSPDLRQQYLE-FAGSMSSVLFESLKGDENTKLTNASVTCLAKIMEVQNLLTDVSTIVDAELISQHFFNMLFNK 1885
            LLEKE+  ++LF  +RLKDHH + P V+ G   L     +P  L + +++AIF EVHVQSL Q DR+ V+N+  N ++ +   LK + +DF FGFIQ +DGE+DPRNL++ F+    ++ ++  +  FVE+ FEV SCYFP++F PP  + +G+ RE L+ +L   L ST  FA + +PL IEK+ S++  AK DSL  +    +  G   L+ F+  +W SIR++   +  E ++ +    +    A L  +VL    E  L+  + N ++DC   L +PDM +     +L+   A AS    +++  ++L        K+   +Q  T LE     L +       D  Q+ L  F   + S++F +L  D +T+L    +    + + V     D+ +  D EL   H + + F K
Sbjct:   83 LLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCVALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQVMDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQREDLILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALT-DPSTQLQLVGI----RTLTVLGAQPDLLSYEDLELAVGHLYRLSFLK 496
The following BLAST results are available for this feature:
BLAST of TCONS_00070693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMS194.669e-5232.94MMS19 nucleotide excision repair protein homolog O... [more]
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