TCONS_00070773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070773
Unique NameTCONS_00070773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070773 ID=TCONS_00070773|Name=TCONS_00070773|organism=Clytia hemisphaerica|type=transcript|length=2467bp
ttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAA
AACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGT
CACGTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAAAA
TGTGTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttcaag
tttttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTCCT
GTTTGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTTTT
GAACAATCatttaattcatttttcaatacaacaaatttttttactGACGA
TGGTACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaa
ccaaaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgattta
tttaattatttaaaaattattttacaaaatgattACATTCAAATATTAGG
GCTAGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAG
TGAATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATT
TGACTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTCAT
CAACGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATA
GTTTCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACT
GGTTTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttact
ttacttttttaaagGAGCCATCGGTCTTGATTGTTACATGTGTAGTTATT
ACGAAGGATATCAATTGCCTCATCCTGGTTGTAAAGCTTTGGTGGACACG
AAAAATTTGACCAAGAGTTGCAGTGATGATGAAGTTTGCCAGTCTATGTT
CGTATTCAAGAGAAGTGAAGCAAGTCAAACTGAAGAGGATTTTTACAGCG
GTTTTAATTCCGTCATGCGTGAATGTCGTCCAAGGGCAAAAGTAGCATGT
GGTGATAAAAAAGACGAGAGATGGTATAATTGTACACACCGACCTTTGAC
GGATGGAAAAGTAACTGAATGCTTTGCGTGTTGTGAGGAAGGCAGGTGTG
GAGCCAAGGTGGAGTTATTTAAAGATGAATGGTCACCTACGGATAAAGAT
AAAGATAAAGGTGCAGGTGAAGGTGAAGGACCCTCTCCTACGGTTATCGC
TCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTTGGCAGTTGCCGTTGCTT
GGAAGAAGAAACTTTACCAACGTGTATCTAATTGTAATAATTAACATCTT
CATGTCAAATTGTTGCACTTTTAAATCACATCTTGAAGAATTTTCGATAT
GATCAATCTCGAATTCTGAATCTTGATAGTCATAACATGCAAAATTTGTT
GTTACCTTTGTTATACTATGGGTGTATGAAATGTTAAATATTGTGGAACA
TGTATTTTTGTTATCAATTTTTAAGTCcatttataaaatttataatatat
aaaactCCCTCCAAAGGGAGGATCAACTGACGAAAATGCCAGTTATCTAG
GATTAAAGATTAGATTTAAAAGTATCTTGTAAATAAGGTCTACTATACTT
GGCGGTCCCTACATTTTATGGATATCTAGAGAAAGAAAGCTGGTTAAAAC
AATatttaaaattggcaaaaatgttCAAGATGATTTTGAATATAAGTCGA
AAAGTGGGATCGAGTTGAGAGTTCAACCGGTGAAAAAGTCATTGAGTTAA
AAAAGCCCGGATTTTCCTTGCGTTCCATTCCAGGAAACTTTACAACtaat
ttttaagtattttttgtaagaaaattcTTTACAGGGGTATTGATTAAAGT
TTTGTACAAAGTAGATGATAAATTATATTTTGTAaagagttttattttta
aatgacaTTCATCCCTTTTAACCCTTACCCAAGTATGGAAAAGTAACATC
CAAACCTGTTGGTGAGCTTTTCCAATATGTAATGCGTTGTTTTATAAGAG
CTTTTTGAGGCCTTCCGgtcttcttaactttttgagttttaagcttaaaa
aagttcttaacatgttcttattttcaccatttttagagtattttagtcca
ttttgccaagaaatcggctgttttagagtctgcgatgccttaaaatgttc
ttaacttgtacttaagattttggccatgtttaatttttataaaaaaccgt
gTATGCGTTAATTGGCAACTTATTATCACGAAAATTAATTTCACCGAAAT
CATTTTTCCTCAAAATAGAGTACTTTTGTAGTTTTCTCACTACGAAATTA
GTACATGCCAAAATTAGGAAAATTTAGGAGCTCTTCTGCTTATCatttag
cctggagatccatgctatgatttcttattctatatactgatggcgaaata
taccgggtgcaccaaaN
Run BLAST on NCBI

transcript from alignment at scaffold_58:151234..153967+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070773 ID=TCONS_00070773|Name=TCONS_00070773|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_58:151234..153967+ (Clytia hemisphaerica)
ttcagcaaaaagtaaacattgaaaatgaaaattatagtAAAACAGACTAA
AACATATTAGCATTTTATGAACAGTTATGAGGTTAATCTGGTTGGTTTGT
CACGTATTATGAAATCTGTGTTTAAAAGTGTAAGTAAAATGTATTCAAAA
TGTGTATAAGCTTGCATTGTGAAAGCTGTAAGTGACAGcactttttcaag
tttttgttgtTATTGCCTTTTTAGTGTCTGAAAGTTTCCATTATATTCCT
GTTTGATTTTACTAAAAGTTTTTCGTCTTTTAAAAATTAGGATACTTTTT
GAACAATCatttaattcatttttcaatacaacaaatttttttactGACGA
TGGTACTCTGTTGAGGCCGAAacgtttaaaaataaatttcaaaaaatgaa
ccaaaagcaGCTTCTGTTTTTTACTGAAGATGTGTGGAAGGAGtgattta
tttaattatttaaaaattattttacaaaatgattACATTCAAATATTAGG
GCTAGACCCATCAAATCGAAAAGTATTAGGTCTTGAATTAGTGATAACAG
TGAATTGATTGATATACACTCTTAACATTAACCTCTCTCGTTTTCTAATT
TGACTGGTAATAATATaacattttgtttagaaatatgaAACCTTTTTCAT
CAACGTGTTGATGCGAGTTCAGAGAAGAATGTAACTCATTCTGTTGAATA
GTTTCGTATTTTGACGAAGTTTCtcttttatacaaaaaaggATACTGACT
GGTTTTGTCAAGatgttttatttcaatattcTGGCTATTTTGTTgttact
ttacttttttaaagGTAAGTAGGACTTTAACTATAATTATATTTACTACT
TATTTCGTCCCCTATCTCACTGATCTCGCATCAATTTTTATATGAACCTT
TTGTCACAAGAAAAGCTAAAGTAAAGAAAAGTTTGGATTAAAAAATCCCA
Ctgaaaaagttttaattgaaacttacaatgtatagcaatgtgccctcccg
gttattaccataatggctttatggcaactcctgaacttgggcacatgATG
TACGGTTTAATTGAAACTTATTGATTTTTAGGAGCCATCGGTCTTGATTG
TTACATGTGTAGTTATTACGAAGGATATCAATTGCCTCATCCTGGTTGTA
AAGCTTTGGTGGACACGAAAAATTTGACCAAGAGTTGCAGTGATGATGAA
GTTTGCCAGTCTATGTTCGTATTCAAGAGAAGTGAAGCAAGTCAAACTGA
AGAGGATTTTTACAGCGGTTTTAATTCCGTCATGCGTGAATGTCGTCCAA
GGGCAAAAGTAGCATGTGGTGATAAAAAAGACGAGAGATGGTATAATTGT
ACACACCGACCTTTGACGGATGGAAAAGTAACTGAATGCTTTGCGTGTTG
TGAGGAAGGCAGGTGTGGAGCCAAGGTGGAGTTATTTAAAGATGAATGGT
CACCTACGGATAAAGATAAAGATAAAGGTGCAGGTGAAGGTGAAGGACCC
TCTCCTACGGTTATCGCTCTAGCAGTTGTGATTCCTGCTGTTGTTTTGTT
GGCAGTTGCCGTTGCTTGGAAGAAGAAACTTTACCAACGTGTATCTAATT
GTAATAATTAACATCTTCATGTCAAATTGTTGCACTTTTAAATCACATCT
TGAAGAATTTTCGATATGATCAATCTCGAATTCTGAATCTTGATAGTCAT
AACATGCAAAATTTGTTGTTACCTTTGTTATACTATGGGTGTATGAAATG
TTAAATATTGTGGAACATGTATTTTTGTTATCAATTTTTAAGTCcattta
taaaatttataatatataaaactCCCTCCAAAGGGAGGATCAACTGACGA
AAATGCCAGTTATCTAGGATTAAAGATTAGATTTAAAAGTATCTTGTAAA
TAAGGTCTACTATACTTGGCGGTCCCTACATTTTATGGATATCTAGAGAA
AGAAAGCTGGTTAAAACAATatttaaaattggcaaaaatgttCAAGATGA
TTTTGAATATAAGTCGAAAAGTGGGATCGAGTTGAGAGTTCAACCGGTGA
AAAAGTCATTGAGTTAAAAAAGCCCGGATTTTCCTTGCGTTCCATTCCAG
GAAACTTTACAACtaatttttaagtattttttgtaagaaaattcTTTACA
GGGGTATTGATTAAAGTTTTGTACAAAGTAGATGATAAATTATATTTTGT
AaagagttttatttttaaatgacaTTCATCCCTTTTAACCCTTACCCAAG
TATGGAAAAGTAACATCCAAACCTGTTGGTGAGCTTTTCCAATATGTAAT
GCGTTGTTTTATAAGAGCTTTTTGAGGCCTTCCGgtcttcttaacttttt
gagttttaagcttaaaaaagttcttaacatgttcttattttcaccatttt
tagagtattttagtccattttgccaagaaatcggctgttttagagtctgc
gatgccttaaaatgttcttaacttgtacttaagattttggccatgtttaa
tttttataaaaaaccgtgTATGCGTTAATTGGCAACTTATTATCACGAAA
ATTAATTTCACCGAAATCATTTTTCCTCAAAATAGAGTACTTTTGTAGTT
TTCTCACTACGAAATTAGTACATGCCAAAATTAGGAAAATTTAGGAGCTC
TTCTGCTTATCatttagcctggagatccatgctatgatttcttattctat
atactgatggcgaaatataccgggtgcaccaaaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044041XLOC_044041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070773-exon-scaffold_58-1491911889:151234..152047TCONS_00070773-exon-scaffold_58-1491911889:151234..152047Clytia hemisphaericaexon
TCONS_00070773-exon-scaffold_58-1510915933:151234..152047TCONS_00070773-exon-scaffold_58-1510915933:151234..152047Clytia hemisphaericaexon
TCONS_00070773-exon-scaffold_58-1575043694:151234..152047TCONS_00070773-exon-scaffold_58-1575043694:151234..152047Clytia hemisphaericaexon
TCONS_00070773-exon-scaffold_58-1491911889:152315..153967TCONS_00070773-exon-scaffold_58-1491911889:152315..153967Clytia hemisphaericaexon
TCONS_00070773-exon-scaffold_58-1510915933:152315..153967TCONS_00070773-exon-scaffold_58-1510915933:152315..153967Clytia hemisphaericaexon
TCONS_00070773-exon-scaffold_58-1575043694:152315..153967TCONS_00070773-exon-scaffold_58-1575043694:152315..153967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:151234..153967 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.587338	0.35391	0.824248	0.158695	0.284784	0	0.181001	0.18001	0.883573	0.74719	0	0.291594	0.278934	0	0.789008	0.129078	0.401748	0.413098	0.63229	0.466695	0.651626	0.218295	0.791554	0	0.200006	0.472136	1.33996	1.42712	1.29999	0.798515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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