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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070951 ID=TCONS_00070951|Name=TCONS_00070951|organism=Clytia hemisphaerica|type=transcript|length=3939bpRun BLAST on NCBI protein sequence of TCONS_00070951-protein >TCONS_00070951-protein ID=TCONS_00070951-protein|Name=TCONS_00070951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MASGSTLQKAIDLVKQATEKDKAGEYQEALSLYEHGVEYFLHAIKYEAQNRun BLAST on NCBI transcript from alignment at scaffold_58:318724..348804- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070951 ID=TCONS_00070951|Name=TCONS_00070951|organism=Clytia hemisphaerica|type=transcript|length=30081bp|location=Sequence derived from alignment at scaffold_58:318724..348804- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:318724..348804- >TCONS_00070951 ID=TCONS_00070951|Name=TCONS_00070951|organism=Clytia hemisphaerica|type=CDS|length=18522bp|location=Sequence derived from alignment at scaffold_58:318724..348804- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070951 vs. Swiss-Prot (Human)
Match: VPS4A (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1) HSP 1 Score: 622.468 bits (1604), Expect = 0.000e+0 Identity = 323/435 (74.25%), Postives = 367/435 (84.37%), Query Frame = 2
Query: 1025 STLQKAIDLVKQATEKDKAGEYQEALSLYEHGVEYFLHAIKYEAQNDRSKESIRAKCIQYLDRAEKLKQFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXEENPEDKKFKDQLGGAIVMETPNIKWDDVAGXXXXXXXXXXXVILPIKFPHLFTGKRQPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESERLVKTLFQMARDHKPSIIFIDEVDSLCSSRSDNESESARRIKTEFLVQMQXXXXXXXXXXXXXATNIPWVLDSAIRRRFEKRIYIPLPEAPARQHMFNLHIGSTPHSIGDKDFKELAKVSNGYSGADISIVVRDALMQPVRKVQSATHFKKVRGPSRNDPDVTVDDLLTPCSPGDPNAIAMNWMEVDGDKLLEPVVSFTDMKRSLHSIRPTVNEEDLIKLKKFTEDFGQE 2329
STLQKAIDLV +ATE+DKA Y+EAL LY+H VEYFLHAIKYEA +D++KESIRAKC+QYLDRAEKLK ++ +K K D +NPE KK ++QL GA+VME PNI+W+DVAGLE AKEALKEAVILPIKFPHLFTGKR PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDL+SKWLGESE+LVK LF++AR HKPSIIFIDEVDSLC SR++NESE+ARRIKTEFLVQMQGVG +NDG LVLGATNIPWVLDSAIRRRFEKRIYIPLPE AR MF LH+GSTPH++ D + ELA+ + GYSGADISI+VRD+LMQPVRKVQSATHFKKV GPSR +P + +DDLLTPCSPGDP A+ M WM+V GDKLLEPVV +DM RSL + RPTVN +DL+K+KKF+EDFGQE
Sbjct: 4 STLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEG--DNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436 The following BLAST results are available for this feature:
BLAST of TCONS_00070951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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