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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070969 ID=TCONS_00070969|Name=TCONS_00070969|organism=Clytia hemisphaerica|type=transcript|length=2022bp
AATCAGGGTAGTTGACGTGTGAAGAGAAGCGTAAAGGTTTTGTCCTGTGA
AGAAAAGAAATCCAAGATGGCCCTGGCAGTTGCTTATATCCTACTGTCCA
TGGCAGCAACCATTAACACCCAACAACCTAACGATGATTCGAACCCCAAC
CTCATGGCAGCCATGACAGGTTATAATATCTTAAAAGGAAACCCATTCTC
AATGAACGCTTTACATGACCCAGGATTCTTGGCATCTTATATCTTCAACC
CATACACCAGTAGTGGCGGACCACCAGGAATGGGCGATGGTTCGAGGCAG
TTACACCCGGGCGTTACAGTGAGAAACATTCGACAATGCGATTTGAGTTT
GACCACTGATACAATCACCACCATGAAAGAATATCAACGACAGGTTACCA
CGGAAACATCAGCTGGCATGGAGTTTGCCAGTAACGTTGAAGCAGATGTC
CAAGCATCAGTGAATGGGATTGGTATCGACACCACAGTTCCTCCACTCGT
CAAAAGCTCCTTCTCCGCAAGCAACAGTTTTagagaaagtgaaaaattct
TCTCACAAAACAAAGGTGTTGTTACACTCAATGATGCAACTTGTACCTCC
TATACGGCCGTCATCTCAGCATACAACCCGCCACCTTTCTCCGATAACTT
TTTGAAAGCCCTTATTGTTCTTCATAGAACAAGTTTCAAATCTGAAGCAG
AAAAAGATCGGGAATTTTATCGTTTTATTGACAACTTTGGTACACATTTC
CTGTCACATGCAACAATGGGTACACGGTTAGCAATCACACGAAAGTACAC
TTCGGACGAATATTCAAACTCAAAAGACGAAGCAATAAAGGACTGCAATG
TTCAACAACTTTCAGTATTTTTCGGACAACAAGTTGACAGCAAATTGGAT
CACTGCAAAGCTGTTGATAAATCATCAAGCTCAAAGATCGAGAATATCTA
CGAGCGTGAATTCATCTCCAGCTATGGTAGTAAACCAGCTAAAGATCTAG
TTGATTGGTCAACACAAGACTTCCCAAACCCCTTACCAGTCCGTATGACA
TTAAGACCGATCCTTAATCTCTTCGGTACAACCTACATGAAACATCCATC
AGTGAAACGCCTTCGAATCCAaccaaaaaacattttgaaatggaTTGCAC
CACGTTACTATAACTTTTGcaataaatacaaaaacatcTTGGGCGTCAAA
ACCTGCAATGCTGAAGCAGTCAAAGGGTGTGGCTGGAGTGATACATGCAA
CCGTAGGTCACAACACTGTATCAACGACAAGACAGACCCTAATGGATACA
GATGTTGTGATATCAAGCAGTGTGCTGACCAGCCATGCAAGTATGGAGCG
TGTCACGTCTCAGGCAAATGCTCGTACGTCTGCAAATGTAGATGGGGCTA
TACAGGCAAACATTGTGAGCACGAAATCCTAACAGCATCCAGCCTGGAAA
TGGGTACTGATATTCTGATCGCAGCAAACCGGTACTTGTCACATGACCAA
ATGGCAAAGAACATTCAATTGTCTTTAGTAAAGCACTATGGAATCAAATT
CACAGTTCTGGTATATGATGATGTTTACGGGTATGGATTACACAACGTCC
AGGGGACGCAATTTTACAGCAATTTCAGAGAATGGGGACACAATGTGGTT
GTCGGCTACTCACAAAATGATTTAGAATCAACACCAGAACAAATGGCCAT
GATCAAATGGAGATTATTAGGAGCTGTCTTGAATCAAGGATGTCATTCAT
CAACTATCGTCGAAAAAGTGAAGGATTTGCTGCATAAGTATAATATACCT
TACAGTATGATCTTTTCCACTCCATGGGGAAATAAATTGCGTACATATTC
GGATGTGGAATCTACATATTTCTTGAACTACGACTGTGGCGTTGGAAAGA
AAGCCTCAATCGCTGTAATGCTAagatgaatttattttttaatttgtaaa
cTAATATAAGAGTACTCATGTATTGTGATAATGTAATCATTTGcataaaa
taaaacattcaTACGAAATAGC Run BLAST on NCBI transcript from alignment at scaffold_58:572836..576996- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070969 ID=TCONS_00070969|Name=TCONS_00070969|organism=Clytia hemisphaerica|type=transcript|length=4161bp|location=Sequence derived from alignment at scaffold_58:572836..576996- (Clytia hemisphaerica)
AATCAGGGTAGTTGACGTGTGAAGAGAAGCGTAAAGGTTTTGTCCTGTGA
AGAAAAGTAAGTACCACAAGTAAGTATGTAAAAAACCGTTTATACGCTTT
TTTTATAAGAATGGTGTTTTTCCAATTCATCATGAATATTCTTAACTTTT
TGGGAAGAATCATCCTGAAGAATTCTTACAGTCTTACAGTATTCTTAGGT
TTGGATCCAAACCCAACCAAAATCTAGCATTCAATACATACCTCGAGCAA
AAATTTATCATTTTTGTTCAACCTGGGCATTTCAAGCTACCTCAAACCTA
CCCCAGACAATAAAATCAATTATTACTTTCGGTTGAACGTTTCACGTACA
CCAGCATCAAGAAATAGTAAAAATTTACTCTCATTGGTTGATAACTGCGC
ACTTTGACATATTAACCAATTGGAGTTTGTTTATNCTTTTATAAAAAAAT
GACGTTATAATTCTCTAGGGATTCGTATGATTTAAAACTGTTGTGCTTTT
CTTTTACCCGGGGGGGGGGCAGTCAGGCAAATTGACCGACGGGTATGTGC
GGCGGTTAAGGGTATGTTTTTCAAAATATTAGAAATGCACTGTAAGGGTG
GACTTTTGATAAATGCACTGTAAGGGTGGAAATTTCAGCAAATCTGGGGA
AAATTGCAAATTTTTGCTCGAAAATGTTGATTTTTTATGCTCTAAAAGAG
TTTAAAATTTGAAAAAATGCGCTGTAAGGGTATGAATTTCATCGATTTTT
TTCTGCACTGTAAGGGTGCGATTCTAAAAGCCAATTTTTTCGCCGCACAT
ACCGTCAGTTGGTAAACCCACTGCCCCCCCCCCGGGCACGTACATCAGCA
AGAAGTAGTAAAAATTATTTTTTTCTTTTCTAGAGTTTCATCATTGTATT
TTACAAGCTTCTAACAGTAATTCTTTTTGTTTACTAAATCATCAAGGAAA
TCCAAGATGGCCCTGGCAGTTGCTTATATCCTACTGTCCATGGCAGCAAC
CATTAACACCCAACAACCTAACGATGATTCGAACCCCAACCTCATGGCAG
CCATGACAGGTTATAATATCTTAAAAGGAAACCCATTCTCAATGAACGCT
TTACATGACCCAGGATTCTTGGCATCTTATATCTTCAACCCATACACCAG
TAGTGGCGGACCACCAGGAATGGGCGATGGTTCGAGGCAGTTACACCCGG
GCGTTACAGTGAGAAACATTCGACAATGCGATTTGAGTTTGACCACTGAT
ACAATCACCACCATGAAAGAATATCAACGACAGGTGAAAATCATATCTTT
TTTTTATATGATACTCCGGTAGGGGGGAGTCAGGTAAATTAACCGGCGAT
GTTTTTCAAGATTGCAGAAATACACTGAAAGCGTGGACTTTTTCATAAAG
GGCGGAAGTTTCTAATTTTACCGAAATTTCAGATTTTTTTAAGGGTGCGA
TTCTAGAAGCCGTTTTTTGCCGCACACACCGTCAGTTGGTAAACCCACTA
ATGCCTCTCCCCCCCGGGGTTGTCTGTACACAAACCCAGTATCTACAGCT
AATTTCAAATTTCATTGCCGTAGATGGTCTGTTGACATCATCTTTTCTCA
TTTGAGATTTTTCAAACCAACCGCTACGATGAAGTATTGGTGAGAGAGGG
GCTATTTATAAATCATACTTCATCGCAGAGGTCTCCGTACGGGAATTTCT
TTATCAAACAGGCAATGCGCACAGAGTGTACTACGAAGTGATAAAACGTG
TGATGCACTCTGGTAAAGAGTACCCCCGGGTGATACTATAAACAATAAAC
CAGTATTTTTTCAAGGTCCATTTCCAAACTGGAACAACAAATGCAGCAAT
CTTCCTATACTTATACAAGGGGGGTTTCATGGTTGGCGGAGGAGCGGAAT
CGGCCCTTTTTTCGGACGGAGTGGCGGAATTTGGCGAAAATTTAGACGGA
ATTACGGAAATTGGGTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGAC
GGAGACGGAAAATTAGACAATTTTAGTGCGGAAAAACGGAATTTAGCAAA
ATAATTTGCGGAATTTCGGAATTAGTAAAAAATATTCAAAATTTGCGGAA
TTTTCGACAAAAATATTGAATTTTGAAGGAATTTTCGGTGACGGAATTTT
GGTTCAATTTAAGACGGTTTGACGGAAATTGGAGAAAAATTTGGCGGAAT
TGCGGAATTGGGTACCCCCTGAAACCCCGCCCCCCTATACAGTAATAAAC
AAGTATCAGCTCCTTAATCACCAAATTACAAAACTACGGTTTCTTTCGTT
TCCGAAAATGAGGCGAGAGATTTAATTCAATTGACCTTATTTTGTTTCGG
TAAATGGAACAAGAACCATATTAACCTTTTCTTTACTTTCGATCATAAGT
TTTAAAATAAAATTCTTTGCTTCTTAATTAAGGTTACCACGGAAACATCA
GCTGGCATGGAGTTTGCCAGTAACGTTGAAGCAGATGTCCAAGCATCAGT
GAATGGGATTGGTATCGACACCACAGTTCCTCCACTCGTCAAAAGCTCCT
TCTCCGCAAGCAACAGTTTTAGAGAAAGTGAAAAATTCTTCTCACAAAAC
AAAGGTGTTGTTACACTCAATGATGCAACTTGTACCTCCTATACGGCCGT
CATCTCAGCATACAACCCGCCACCTTTCTCCGATAACTTTTTGAAAGCCC
TTATTGTTCTTCATAGAACAAGTTTCAAATCTGAAGCAGAAAAAGATCGG
GAATTTTATCGTTTTATTGACAACTTTGGTACACATTTCCTGTCACATGC
AACAATGGGTACACGGTTAGCAATCACACGAAAGTACACTTCGGACGAAT
ATTCAAACTCAAAAGACGAAGCAATAAAGGACTGCAATGTTCAACAACTT
TCAGTATTTTTCGGACAACAAGTTGACAGCAAATTGGATCACTGCAAAGC
TGTTGATAAATCATCAAGCTCAAAGATCGAGAATATCTACGAGCGTGAAT
TCATCTCCAGCTATGGTAGTAAACCAGCTAAAGATCTAGTTGATTGGTCA
ACACAAGACTTCCCAAACCCCTTACCAGTCCGTATGACATTAAGACCGAT
CCTTAATCTCTTCGGTACAACCTACATGAAACATCCATCAGTGAAACGCC
TTCGAATCCAACCAAAAAACATTTTGAAATGGATTGCACCACGTTACTAT
AACTTTTGCAATAAATACAAAAACATCTTGGGCGTCAAAACCTGCAATGC
TGAAGCAGTCAAAGGGTGTGGCTGGAGTGATACATGCAACCGTAGGTCAC
AACACTGTATCAACGACAAGACAGACCCTAATGGATACAGATGTTGTGAT
ATCAAGCAGTGTGCTGACCAGCCATGCAAGTATGGAGCGTGTCACGTCTC
AGGCAAATGCTCGTACGTCTGCAAATGTAGATGGGGCTATACAGGCAAAC
ATTGTGAGCACGAAATCCTAACAGCATCCAGCCTGGAAATGGGTACTGAT
ATTCTGATCGCAGCAAACCGGTACTTGTCACATGACCAAATGGCAAAGAA
CATTCAATTGTCTTTAGTAAAGCACTATGGAATCAAATTCACAGTTCTGG
TATATGATGATGTTTACGGGTATGGATTACACAACGTCCAGGGGACGCAA
TTTTACAGCAATTTCAGAGAATGGGGACACAATGTGGTTGTCGGCTACTC
ACAAAATGATTTAGAATCAACACCAGAACAAATGGCCATGATCAAATGGA
GATTATTAGGAGCTGTCTTGAATCAAGGATGTCATTCATCAACTATCGTC
GAAAAAGTGAAGGATTTGCTGCATAAGTATAATATACCTTACAGTATGAT
CTTTTCCACTCCATGGGGAAATAAATTGCGTACATATTCGGATGTGGAAT
CTACATATTTCTTGAACTACGACTGTGGCGTTGGAAAGAAAGCCTCAATC
GCTGTAATGCTAAGATGAATTTATTTTTTAATTTGTAAACTAATATAAGA
GTACTCATGTATTGTGATAATGTAATCATTTGCATAAAATAAAACATTCA
TACGAAATAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070969-exon-scaffold_58-1575043694:576941..576996 | TCONS_00070969-exon-scaffold_58-1575043694:576941..576996 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1575043694:575714..576050 | TCONS_00070969-exon-scaffold_58-1575043694:575714..576050 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1575043694:572836..574464 | TCONS_00070969-exon-scaffold_58-1575043694:572836..574464 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1510915933:576941..576996 | TCONS_00070969-exon-scaffold_58-1510915933:576941..576996 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1510915933:575714..576050 | TCONS_00070969-exon-scaffold_58-1510915933:575714..576050 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1510915933:572836..574464 | TCONS_00070969-exon-scaffold_58-1510915933:572836..574464 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1491911889:576941..576996 | TCONS_00070969-exon-scaffold_58-1491911889:576941..576996 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1491911889:575714..576050 | TCONS_00070969-exon-scaffold_58-1491911889:575714..576050 | Clytia hemisphaerica | exon |
| TCONS_00070969-exon-scaffold_58-1491911889:572836..574464 | TCONS_00070969-exon-scaffold_58-1491911889:572836..574464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:572836..576996 - |
Blast
The following BLAST results are available for this feature:
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