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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070843 ID=TCONS_00070843|Name=TCONS_00070843|organism=Clytia hemisphaerica|type=transcript|length=5887bpRun BLAST on NCBI transcript from alignment at scaffold_58:827377..836751+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070843 ID=TCONS_00070843|Name=TCONS_00070843|organism=Clytia hemisphaerica|type=transcript|length=9375bp|location=Sequence derived from alignment at scaffold_58:827377..836751+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070843 vs. Swiss-Prot (Human)
Match: SERA (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4) HSP 1 Score: 332.028 bits (850), Expect = 1.034e-110 Identity = 155/255 (60.78%), Postives = 201/255 (78.82%), Query Frame = 2
Query: 4136 IKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGLIVRSATKVTQDVYDCAERLKIIGRAGTGVDNIDQISASAKGVLVMNTPGGNTLSAAEHTCAMISALARHIGQGYASMLEGKWERSKFMGCELGGKTLAIIGLGRIGREVASRMQSYGMKTVGYDPLVSPEEAATFGVEYLQLKNIWPIADFVTVHVPLIKPTRGMINASVFEVCKPSMKVINVARGGIIDEKDLLNALNAGKCGGAALD 4900
++KVLISD +D C+ +L++ ++V K LSK+EL A ++D +GLIVRSATKVT DV + AE+L+++GRAGTGVDN+D +A+ KG+LVMNTP GN+LSAAE TC MI LAR I Q ASM +GKWER KFMG EL GKTL I+GLGRIGREVA+RMQS+GMKT+GYDP++SPE +A+FGV+ L L+ IWP+ DF+TVH PL+ T G++N + F CK ++V+N ARGGI+DE LL AL +G+C GAALD
Sbjct: 6 LRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 260 HSP 2 Score: 90.1225 bits (222), Expect = 1.034e-110 Identity = 62/150 (41.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query: 4902 EPPKEGSVSMELVKHPKTLCTPHLGASTTEAQLRVAKEIAEQFVDAVNGKPMVGLVNAPALSQLANPLYAPWVELAQKXXXXXXXXXXXXXXTLHL--DGDELKPATRLLNTALCFGLAK--AKGLDCNMISAVSLLKEKNIVVVNSPTP 5339
EPP++ + LV H + PHLGAST EAQ R +EIA QFVD V GK + G+VNA AL+ +P PW+ LA+ LG+L + S T+ + G LK A L+ A+ GL K +K D N+++A L+KE + V S +P
Sbjct: 265 EPPRDRA----LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSP 410 The following BLAST results are available for this feature:
BLAST of TCONS_00070843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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