TCONS_00071015 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071015
Unique Name	TCONS_00071015
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3299

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:1021292..1036769-

transcript sequence

>TCONS_00071015 ID=TCONS_00071015|Name=TCONS_00071015|organism=Clytia hemisphaerica|type=transcript|length=3299bp
gaaaaaaaaacaaaagataaataaataaacaaaaacacaTTGACGGCCAC
CCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACTTGC
CCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGGAAG
CCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCAGAC
CTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGCTGC
AGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGATATC
TGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAgcagaa
aatattcaaaatattccaGTTGTTGAAGAACTTTTAAAGGAGGGTAAAGG
AAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTATCT
CAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTATCAG
GGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGACAG
TATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGGAGC
TTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCAGTC
AGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGCAGC
TCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTGCTC
AACCACCGTCAGCAAAAGTGCCAGTTGAAACAtgtgaaattgttgaagag
ggTGAACctccaaagaaaaagaaaaagaagatgaagaagaagaaaaaacc
aaAGGAACCCAAACCTCAAACAacgcaaaaattcaaaaaatcttcaAGTT
GGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCAAGT
AAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACGTCA
TAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGACGG
GAGACGaggaacaagttaaaaacatcgtCCTCCAGTATTGCACACGTGGC
AAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGAATCA
ACCAATGGATCCAATCACATCTCAAATATTACAACACATAAAAGTTCTTG
AGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAGAGATTG
TTGCAATTGTTGCATCAATACGGTATTCGGGAGGTGCCACAAGAATTTGA
GGTGGACGCTGCAGGTCAGATGGTACAAGTGGAAAACACTCAAcgtaaaa
aatgttcttttcaaCTGACCAGGGAGCATTTACCGAATGGCTTCCAAAAA
TTGAAGGAGGTTTGGGTGGCTCTACTTCAAGACATGCCCATGACAGCCTT
GATCAGGAATCTCGGCAAAATGACTAGCCTTGGGCTCTTTGATGATCCAG
CAAACAGAGAAATCGTCAAGAAGGTTTTAGGGGATGGCTCTATTTTGAAC
AAAGCAAGAATTCACCCAGTCAAGATTCTGTTAGCATCAAAGATGTATGA
GCAAGGCCATGGTGATCAAGGCCAAAGCCATCAACCACAACAAGAATATC
CAACAATGAGTCTTTCTCAACAACTACgacaacaacgacaacgacaacaa
cagccacaacaaccacaacaacgaGTACCAACCAAAGAACCACTTACTTG
GATACCAAACGCTGAAATCTCCAAAGCTCTCAATGATGCTTTCTACTTAA
GTTTCAGGCAACCCGGCAAGAATTCTTCCTTCCGTACGGACAAAAAGTTC
ATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGGCGTAACTGTGTAGG
GTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTA
CGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTTTCGGGCGCACGCTT
CAAAATATCGATCATTTATTGAAGAGGGATATGACCATCCGTGAAGCCAT
TCAATTGGGACGCTCTATCAACTTTGGTGCAACAGACTGTGCTCTACCAA
TGGTGCATGCCACGCAGAACAGACTGGATGTGGACGTTTTCATTGTTTAC
ACTGACTCCGAAACTTGGGTTGGAAAAGTTCATCCTTCTGAAGCTTTGAA
GAATTATCGTCTAAAGATGAACAAACCGGATGCCAAACTCATTGTTATGG
CAATGCAGGTGAATGATTTCACGATTGCCGATCCACTTGATCGCGGTATG
TTTGACGTTTGCGGATTCGACTCTAACGTACCTGATATGATCTGCGAGAT
CGCCAGAGGAAATATGTCTTAAAATCACCAAACAAAGAGAAACGAAATCT
AAACCTTTCTGGTTAGCCTTTGTTTACATGGCTCTAGCTGCTGGTGATTT
GGTGCTGGTGGTCTTAACATTCATATCGGGAAAAATGGAATTGATACATT
ATCAACCAGCGCAGCAAAGAGAATGACCATCATTGACTTATTGCAGGGTC
CTTGGATTACTGGACAGGTGGGTCAAGCAGGTGATACGAGTTCTGTTGTT
CACTGACTGAGAAGATTCGCAGATTAGGACCCGTGTTTTTCAGTAACCTG
TTTTGGCACTAAATGCAAAGGTAGAAACTTTTAAACACGTCCTATTCTAT
AATTTTACATAAATAATAGTTTTGTTGAGCGACTGGAGTCACCTTTTCGT
GAATCTTTGGTTTGTCAGGGGGTTAAACCAACGTAGCCGAATGCCCTTCT
ATCAGCGGTACAAACCGTAAACTGTATCAGCTGCTTGACCCACCCTATTG
ACACTATGCTATCCTTTGGTAAATCCAAAGGCAAAGGCATGAACGAATAT
GAACATTAATTGACATAAGATTCAAATGATGTATGGAAGCTAATACAAAT
GTTATTCGTAGATATTATTTGGATCAAGGGATAATTTAATAATAACAATG
CTTGTTTTTGTATCATGTATTCAGTGTTTTATGCTTTTAACCATCTTTTT
ATACGGTCCATTTTAATTTGTATACATAACTTCAACTAGGGTATAAACCT
CTCGGATGGCTTCCTGGCACAAAGTAAGTTTGTTTTTTGGTAAGTTCAGG
AAGTAgacaaagattttgtttgaaagaCTCAGTCCAGGGTTTGCTTGTTA
GTTTGTAGTTTTTCAATagattttattatattatttcaTTTACGCCTTAT
ATTTGATTACTGTATTGTCTAAACAATACTGCATGTTGCTATTCTGCGG

Run BLAST on NCBI

transcript from alignment at scaffold_58:1021292..1036769-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071015 ID=TCONS_00071015|Name=TCONS_00071015|organism=Clytia hemisphaerica|type=transcript|length=15478bp|location=Sequence derived from alignment at scaffold_58:1021292..1036769- (Clytia hemisphaerica)
GAAAAAAAAACAAAAGATAAATAAATAAACAAAAACACATTGACGGCCAC
CCTTAGGGGTGAAGAACCACAACTACTATGGATCCATTCAAAAAACTTGC
CCTTTTGAAGGCCAAAATGACCGGCATGAGTAGGGCCCAGATTGCGGAAG
CCATCCGAAACATGACCCTGGGAATAAACCCAACAGAACAAGAGCCAGAC
CTTACTACACCACAAAATCAACCTTTGCAAGGACAGTCACAAAACGCTGC
AGGTGGTTTTTCCTACACTATAGATAATATAACCAGACTGAAAAGATATC
TGATCTTAGGTTCAGATAAAGCAAAATACAAGGGTGGCTCTCAAGCAGAA
AATATTCAAAATATTCCAGTTGTTGAAGAACTTTTAAAGGAGGGTAAAGG
AAAGGAGGTGATTGATTTGATCGTTCAGTTTGCTCGTGAAGCACGTATCT
CAAAAGAGGAGAACATTTTGATGGTATTACGTGATTGTATGATGTATCAG
GGAGATGCCATGTATGAAGATAGGACCATACAACGAGCTGCTTATGACAG
TATCGTCAAAATCTGTAATATCCCAACCAAGCTTTTCCGATTGATGGAGC
TTTGTAAACCATGTTATCAAAATAATTGGAAGCCTTTAACCAAGCCAGTC
AGTAAGACGCAACTTCGGAAGAAAGCAAAACAAGAGGCAAAACAAGCAGC
TCAACAGCAGAATCAAAGGCCTTCCACCTCCACCGAAATCCCAGCTGCTC
AACCACCGTCAGCAAAAGTGCCAGTTGAAACATGTGAAATTGTTGAAGAG
GGTGAACCTCCAAAGAAAAAGAAAAAGAAGATGAAGAAGAAGAAAAAACC
AAAGGAACCCAAACCTCAAACAACGCAAAAATTCAAAAAATCTTCAAGTT
GGGGACGTGCTAGACGGCGTGGTGTCGGCAATTTTTACACCGATTCAAGT
AAAGATGCCAATCGATTGTTATTGTTGATGACGAAGTACAAACAACGTCA
TAATTGGAACCATGTTCAAACGTTGGGTTATTGTCATCCAAAAATGACGG
GAGACGAGGAACAAGTTAAAAACATCGTCCTCCAGTATTGCACACGTGGC
AAAGAAAAGTTGGACAAATATCTGGTCAAGAAAAAAATCGATGGGGTAAC
GATATTTCATTCTTTTCTATTTCATTTTTTAAAAATTTGTAAGAAGAGAT
GTGATAATTTCATCACTGTCTGTGTAGTGTAGGGAAAAGTTTTCCCAAAT
CTCCAATTCTTTACTTACACAACATTTAAACAAAAGAAAGAACAACCCCA
TTTTCAGAGCTGCGCGAGCACAAATTTTGAGAAATTCTTTTGTTTGTTAT
ACTTTTTCCGCAAAGAGGCTTCTTATTAAAAAAGAAGATCCTTAATATTT
CCACTACCGTCCCTGCGCACTTCCGGGAGGTAATCGAAAAAGGTTGAATC
CAAATGCAGCACCATAAAAGCTTTTCGGTACCATACCGGATCCAAGTTTA
GTAAATATCATGAAATTTTTCACATTGATAACAAGGTTTTCTTAATTTTT
GGACTTTCTTTCAAGAATCAACCAATGGACCCAATCACATCTCAAATATT
ACAACACATAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCC
CGGCCGATGTGGAGAGATTGCTGCAATTGTTGCACCAATACGGTATTCGG
GAGGTGCCACAAGAATTTGAGGTTGACGCTGCAGGTCAAATGGTACAAGT
GGAAAACACTCAACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGCATT
TACCAAATGGCTTCCAAAAATTGAAGGAGGTAATAGTTGATCATTTAAAC
AAAACTTAAACCGCTAATATACGGTTTTTTTCTATCCCGATCAGCCCAAA
TAGATTTTCTGTTGATCGAAAGGTGATCTTTGAAAGCTTGACTAAAAGCT
CTTTTAATCGTAATTATATACAATTTCACTCTACTCAACAATACCAATCT
TTCTCCATTGAAATTTTTAGGTTTGGGTGGCTCTACTTCAAGACATGCCC
ATGACAGCCATGATCAGGAATCTCGGCAAAATGACCAGCCTTGGGCTCTT
TGATGAATCAGCAAACAGAGAAATTGTCAAGAAGGTTTTAGGGGATGGCT
CTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTATTT
AGAGTGATGGCCAAGGCGCATAAACCAGGGGCTCCCTGCATCTGTCGATA
GTTATTTTTCAAGCCCTTTTAGTTTTGGCGCACGTTTTCTACACGACAAT
AATAGCTGCGTGTAAATTTATGGAAACAAGGCATATCTTTTTGCTTATTG
GTGATATTTAACGTTAAATTTCGACAGTTTTACACTGCACCTTACATGAA
TGATCAAATACACGTTTTTTTTTAAGAAACTAGTTCTACCAAGCAGCCTC
AATGTTTCTTAAGAAATTTGCCATTTGAGCTTTAAAAATGTTTCTTACAT
GTTTCAAAATTTTTTGACATAATCAGCTTCATGGAAGGCTGGATTGGAAG
GATTTAAAAAAAAATGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTC
AGCATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGT
GTGTTTCTTAAAAAAAAACCGTGTACCAACTATATATCCATGCAGGGAAA
ATTAGAAAAGCAATGCACCGTGATTGAACCTGTAAGTAATGCACCGTGAT
TGAACCTTGTTACAGATTCTGTTAGCATCAAAGATGTATGAGCAAGGCAA
TGGTGATCAAGGGCAAAGCCATCAACAACAACAAAAAAATCAAACAATGA
GTCAATCAACCAAAGAACCACTTACTTGGAGACCAAACGCTGAAATCTCC
AAAGCTCTCAATGATGCTTTCTACTTAAGTTTCAGAGTAAGCTCTATTCT
AGATATGCAGGCATGGTTAACATAGTCAAGCATTCTGCTATAACGAATTC
CTATGGCTCGTGCGCTAGAGTTTCATTTATCATTTGAACTTTTATATACT
TGCTAAAATTGATTAGTTTTCTGGAGAATCTCTTTCATTATTTCCATAGC
AACCCGGCAAGAATTCTTCATTCCGTACGGACAAAAAGTTCATGTTAAAT
CTAGATGTTAGTGACTCTATGGATTGGGGTAACTGTGTAGGGTGTGATTT
CCTGACGCCCGCTGCCGCCTCTTTCGCCCTGGCCATGATTACGATGAATG
TTGAGCCACATTGTAGTGTGTTCGCTTTCGGGGGAACGCTTCAAAATATC
GATCATTTATTGAAGAAGGATATGACCATCCTTGAAGCCATTCAAGTGGG
ACGCTCTGTAAGTCGACTTCACTATCAAGAAATCTTGTTTTAAATATTCT
CATTTCTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACATCATT
CTTAGAACGTCAAAAATGTCTAATTCCGAATTCTATTTGAATCTTTCTAT
AGTTCGAACTAATTCCCAGTCCCCATCAGCATCAATTTTCAATATTCCCT
TTCGACTTTGAATGAGCGAGACTAAAATATATACATTATCGGCCAAAACT
TAGCCGGCCTCAATTATTAGTCGGCCCTAATTTTAGTCACATCATCAAAA
TTTAGTCACTTAGGGTCGACTAAATTTTGGCCGATAAGGTATAAAAAATC
GACTTCCATGTCAATAGCTTTATTCCGCAATTTTCTGTGCTTTCTCTTTT
TATCAGTTATGTCATCATGCCTCATTAAACTTAACTTAGGACATCCGTAT
TATCTTTCAGCTCAATTTCGGTGCAACAGACTGTGCTCTACCAATGGTGC
ACGCCACGCAGAACAGGCTGGATGTGGACGTTTTCATCGTTTACACTGAC
TCCGAAACTTGGATTGGAAAAGTTCATCCTTCTGAAGCTTTAAAGAATTA
TCGGCAAAAGATGAACAAACCGGATGCCAAACTCATCGTCATGGCAATGA
AGGTTTGTCTGTTCTCCACACGGCCCTGTAATGTAGTCTGTGCCTCTAAA
GAATCCTGCATTGTAACACACATGCTTAATTTGTCGNTTTCACGGCCCTG
TAATGTAGTCTGTGCCTCTAAAGAATCCTCCATTGTAACACGCATGCTTA
ATTTGTCGTTCTTTAAACCATATATAGTTAATTCCCGTGATAAACAAAGA
GGAATGAATCTGTAGGGGTGGTACATGTCACTTTCGGTCGGGGCTGTGGA
CGGCCAAATATGTCGATTTTTATGAAATTTGTCGTTTTTTTGTCTATTTT
TAGTAATGCAGGATTCTTTAGATAAACCCCTCATGATATTATGATATCTC
GTTATAAAAAGTGATGGCATCAATTCATTTCAGTCGGTTTCAATCCTGTA
AAACCTTAAAAACACACGGTGAATAGGTCATCAACTTCTAGTTATTAGAA
TTCTGTAGATAAACCCTTTTCTTTTTCATTGTATTCGAACTTTTTGTATG
ACTTCCCAAGGGAATGTTGTGGTGCTTATAAAGACTTTTTTACAGGTTTT
GTAAGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACG
GGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAAT
GATGTGATGCATATTAAAACTTTTTTACAGGTTTTGTACGGGATTGTTTT
GGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGATTGTTTTGGTGA
ATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGAATATA
AAGAGTTTTTTACAGGTTTTGTACGGGAATGTTGTGATGCATATAAAGAC
TTTTTTACAGGTTTTGTACGGGATTGTTGATGGTGAATAAAAAGACTTTT
TTACAGGTTTTGTACGGGATTGTTGTGGTGAATATGAAGACTTTTTTACA
GGTTTTGTACGGGATTGTTGTGGTGAATATAAAGAGTTTTTTACAGGTTT
TGTACGGGATTGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTAC
GGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGTACGGGAAT
GATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACAGGTTTTGTACG
GGGTTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGATT
GTTGTGATGTATATAAAGAATATTTTACAGATTTTGTACGGGATTGTTGT
GCAGAATATAAAGACCTTTTTACAGGTTTAGTACGGTAATGTTGTAGTGA
ATATAAAGACCTTTTTTACAGGTTTTATACGGGATTGTTGTGGTGCATAT
ATATTTTATTTTATTGGACCTACCCCAGTGGAGGTCCTATAAATTAACCG
TTGTATGTTCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCATTAG
TTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGT
GACGGAGCCCGATTTTCGAAAAAAAAAATTTTTAGGCAAATTTGGGCCAA
AAAACGACTAAAAACAGGTTTTTTGGACTTTGTGAAAAATTGGATCATTA
ATTTTTTCTGATTTTTTGTAGGATAGTAGGGTATCATCATAGGTGAAAGA
TGGCTCAAGCAGATTTTTGCAAAAAAAATTTATTGGCTTAAAAAACGCAT
GTTTATCTATAAGAATCAATATTAATAAGCATACATCAATGTTCTTAGTC
AAATTACTAAATTTTATTATTTTTTTACCTTTGGTTGCTTGGCGTGTTTT
TGTAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAAT
TACTTAGGTATTAGCTTTTCTCGAGATTGCCTGTTTCATTCTTTATTATT
TTTGCACAAAGATGCGTAACTATAAACCCTCGAATGTGACGGAGCCCAAT
TTTCGAAAAGAAATGTTTTTGGGCAAATTTTGGCCAAAAAACGGGTTTTT
TGGACTTTAAAAAATTGGATCATTAATTTTTTCAAATTTTTTTGAATGAA
AATAGGTAAAAGATGGCTCAAGCAGATTTTTGTAAAAACGAATTTTTTTA
GCTCGAAAAACGCATCGTTATCTATAAGAATCACTATTAATAAGCATACA
TCAATGTTCTTAGTCAAATTACTCAATATTTTGATGAGATCGATGTGTTT
TTTTGCTCACGAAGTCTTGAATATGAAAGAATATTTATAGAGCATGAAAT
TTTGGTTTCTAAACGGTTTTTTATAAGAAACAAACGATTAATTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTATTTTAT
TTTTATTTTCCAATTTATTTAACGTTGGGCTGACATCGTTATAATTAAAA
ATACTAATTAATACCAACTATATAGAATACAATATAGTATAGAATAATAA
ATTTAAAATTTTTTTTTATGTGTATATTTTACAATGACAAATATTTGTAA
GATTTAGTTTTTCTTTCAGACTTTTTTTTTACAGTTTTTGTACGGGATTG
TTGTGGTGAATATAAATACCTTTTTTACAGGTTTTGTACGGGAATGTTGT
GGTGCATATAAAAACTTTTTTTACAGGCTTTGTACGGGATTGTTGTGGTG
AATATAAAAACCTTTTTTACAGGTTTTGTACGGGATGGTTGTGGTGAATA
TAAAGACCTTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAA
AGACTTTTTTACAGGTTTTGTACGGGAATGTTGTGGTGCATATAAAGACC
TTTTTTACAGGTTTTTGTACGGGATTGTTGTGGTGAATATAAAAACCTTT
TTTACAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTA
CAGGTTTTGTACGGGATGGTTGTGGTGAATATAAAGACCTTTTTTACAGG
TTTTGTACGGGATTGTTGTGGTGCATATAAAAACTTTTTACAGGTTTTGT
ACGGGAATGATGTGATGCATATTAAAACTTTTTTACCTGTTTTTACAGGT
TTTGTACGGGATTGTTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGT
ACGGGATTGTTGTGGTGCATAGAAAGACTTTTTTTACAGGTTTTGTACGG
GAATGTTGTGATGCATATAAAGACTTTTTTACAGGTTTTGTACGGGAATG
TTGTGGTGAATATAAAGACTTTTTTACAGGTTTTGTACGGGAATGTTGTG
GTGAATATTTATATTGTATCTGTGTGAAATCAAGTGCGTATTGTATCTGT
ATTGGTGAATATAAAGACTTTTTTCTTTTCTCCATTTTTCAAGGTGAATG
ATTTCACGATCGCCGATCGACTCGATCGCGGTATGTTTGACATTTGCGGA
TTCGATTCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGAAACAT
TTCTTAAAATCACCAAACAAAGAGAAATGAAATCTAAACTTTTCTGGTTA
GCCTTCGTTTACATGGCTCTAGCTGCTTGTGAATTTGGTGCTGGTGGTCT
TAACATTCTATCAGGAAAAACGGAATTGATACATTATCAACCAGCAAAGA
GAACGACCAACCTTGACTTATTGCAGGGTTCTTGGATTACTGGACAGGTG
GGTCAAGCAGGTGATACCAGTTCTGTTTTTCACTAATTGTGAAGATTCGC
AGATTAGCACCCGTGTTTTTCAATAGCCTGTTTTTTTTTTGGGGGGGGGG
GGTTGGAAATTGTAATTACGAAATCCCAAAAATAAGGTGAATATAGGCTA
AAATCAGGCTATTTAGAGCAGAATAGAATAAGGGTCCTTTTCTTTTAAAG
TTGAAAACAAAAATTAATAAATGGGGGGTTCTAATAAGGTCCGTGGGGGG
GGGGGGGCTGGAAAATTTTTCGAAAAATTAACAAGCGGGGCCCGTTTGTT
TGGAACCTAAGAGTACTTGGAGTTGTGCGGGATTCGATTGAGAAGCATAA
ATTAAGAATCAATAAAGAGAGTCATAAGGCAGGGAACAATGATATTGATA
TTGATGTATTTCTTGTATAGAAGCAGTTTACATAGAATGCTACACGTTGA
GGAGCTGGAAACCAGTGTTTCATTCTTTTCCAATTTGACTTTACTTCAAT
AAACGATGAAATTTCATATACTGTACATACATGCAAGGAATCATTTCAAG
TTTTATATTTAATTTAATTTTATTTTATTTTATTGTAAACAAACTATAAC
ATAATTTTACCATTTAATTTCTTAATTGCATTGAGTTTGAAGCTCTTCTT
TCGAAATTTGATCATTAAATTATACACAACTTTATATATTACTTTTATTG
TGATTTGATTTCTTTCAAAAATCAATTTCTTTTGTATTTTTATAATCGTT
GGAATAATATATCAAAACATTTTGTTTTTCCTCTGTTGTCCAATTTCCTT
ATTTCATTGCTTTTTAAGATGTACTTTGTTCCCGGGGGGGGGGAGTAGGG
TTTACCAACTGACGGTATGTGCGGCGAAAGAATTGGCTTTTAGAATTGCA
CCCTTACAGTGCAGAAAAAAATCGGTGAAATTCATACCCTTACAGTGCAT
TTTTTTCAAATTTTAAACTCTTTTAGGGTAGAAAAATCAAGATTTTTGGG
CAAAAATTTAAAATTTTTCCTACATTTGCTGAAATTTCCACCCTTACAGT
GCATCATTTTATTTTGAAAAACATACCTTTAATCACCGCACATACCCATT
GGTCAATTTGCCTGACTGCCTCCCCCCTGGGGCTTTGTTAGTATCTTTGA
AAGAGTATCTTTCTTAAAGTATTCTGTATTTACCTAATATCTATCATTTC
TTTTATTTCCACAGAAAAAAAATAGAAAATTAATAAATAAACAAAAACAC
ATTGACGGCCACCCTTAGAGGTGAAGAACCACAGCTACTATGGACCCATT
CAAACAACTTGCCCTTTTGCAGGCTAAAATGGCCGGCATGAGTAGGGCCC
AGATTGAGGAAGCCATCCGAAACATGACCCTGGGAATAAACCCAACAGAA
CAAGAGCCAGACCTTACTACACCACAAAATCAACCTTTGCAAGGACAGTC
ACAAAACGCTGCAGGTGGTTTTTCCTATACTGTTGATAATATAACAAGAC
TGAAAAGATATCTGATATTAGGTTCAGATAAAGCAAAATACAAGGGTGGC
TCTCAAGCAGAAAATGTTCAAAATATTCCAGTTGTTGAAGAACTTTTAAA
GGAGGGCAAAGGAAAGGAGGTGATTGATTTGATCGTTCAATTTGCTCGTG
AAGCACGTATCTCAAAGGAGGAGAACATTTTGATGGTATTACGTGATTGT
ATGATGTATCAGGGAGATGCCATGTATGAAGATAGGACAATACAACGAGC
TGCTTATGATAGTATTGTCAAAATCTGTAATATCCCAACCAAGCTTTTCC
GATTGATGGAGCTTTGTGAACCATGTTATCAAAATAATTGGAAACCTTCA
ACCAAGCCAGTCAGTAAGACGCAACTACGGAAGAAAGCAAAACAAGAGGC
AATACAAGCAGCTCAACAGCAGAACCCAGGGCCTTCCACCTCCACCGAAA
CCGCAGCCGCTCAACCACCGTCAGCAAAAGTGCCAGTTGAAACATGTGAA
ATTGTTGAAGAGGGTGAACCTCCCAAGAAAAAGAAAAAGAAGACGAAGAA
GAAGAAAAAACCAAAGGAACCCAAACCTCAAACAACGCAAAGGTTCAAAA
AATCTTCCAGTTGGGGANGAAAAAACCAAAGGAACCCAAACCTTCCACAA
CGCAAAAGTTCAAAAAATCTTCAAGTTGGGGACGTGCTAGACGGCGTGGT
GTCGGCAATTTTTACACCGATTCAAATAAAGATGCCAATCGATTGTTATT
GTTGATGACAAAGTACAAACAACGTCATAATTGGAACCATGTTCAAACGT
TGGGTTATTGTCATCCAAAAATGACGGGAGACGAGGAACAAGCTAAAAAT
ATCGTCCTCCAGTATTGCACACGTGGCAAAGAAAAGTTGGACAAATATCT
GGTCAAGAAAAAAATCGATGGGGTAACCATATCTCATTCCTTTCTATTTT
ATTTTTTTTAATTTGTAAGAAGAGATATCATAATGATACTTTCGTCACTG
TCTTTGTAGTGAGAATTTATCTCGAATCTGTTCAAATGACACCACTTACT
CTATTAATCTCCTAACATTTGCTTACATGGCATTTTTAATCTCGCGTCGT
GCGAGCACAAATTTTGATAATTTCTTTTGTTTGTTATACTTTGTCGGCAT
AGAAGCTTCTTATTAAAAAAGAAGATCCTTATTATTTCCACACACTCCCT
GGAGCTGGTAATCGAAAAAGGTTGAATCCAAGTTTAGTAAATATCATGAA
ATTTTTCACATTGATAACAAGGTTTTCTTAATTTTTGGACTTTCTTTCCA
GAATCAACCAATGGATCCAATCACATCTCAAATATTACAACACATAAAAG
TTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCGATGTGGAG
AGATTGTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTGCCACAAGA
ATTTGAGGTGGACGCTGCAGGTCAGATGGTACAAGTGGAAAACACTCAAC
GTAAAAAATGTTCTTTTCAACTGACCAGGGAGCATTTACCGAATGGCTTC
CAAAAATTGAAGGAGGTAATAGTTGATCAATTAAACGAAACTTAAAACCG
CTAATATACGGTTTTTTCAATCCCGATCAGCCCGATCAGATTTTCTATTG
ATCGAAAGTTAGTCCTTGAAAGCTTGACTAAAAGCTCTTTTAATCGTAAT
TAAATACTTAAATGGTTCCAATTTCACTCTACTCATGAATACCAATTTTT
CTCCCTTAAAATTTTTAGGTTTGGGTGGCTCTACTTCAAGACATGCCCAT
GACAGCCTTGATCAGGAATCTCGGCAAAATGACTAGCCTTGGGCTCTTTG
ATGATCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGGGATGGCTCT
ATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTATTTATTTAG
AGTGGCGGCCAAGGCGCATAAACCAGGGGCTCCCTGCATCTGTCGATGTT
CCGATATTGAATAGGCTTTTTTCGAGCCCTTTTAGTTTTGGCGCACGTTT
TNTAAAAGTTCTTGAGGAAGTCAAGAACCTGAAACCGGATGTCCCGGCCG
ATGTGGAGAGATTGTTGCAATTGTTGCATCAATACGGTATTCGGGAGGTG
CCACAAGAATTTGAGGTGGACGCTGCAGGTCAAATGGTACAAGTGGAAAA
CACTCAACGTAAAAAATGTTCTTTTCAACTGACCAGGGAGCATTTACCGA
ATGGCTTCCAAAAATTGAAGGAGGTAATAGTTGATCATTTAAACGAAATT
TAAAACCGCTAATATACGGTTTTTTTCAATCCCGATCAGCCCGATCAGAT
TTTCTATTGATCGAAAGGTAATCTTTGAAAGCTTGACTAGAAGCTCTTTT
GATCGTAATTAAATACTTAAATGGTTCCAATTTTCACTCTACTCAACAGT
ACCAATCTTTCTCCATTAAAATTTTAGGTTTGGGTGGCTCTACTTCAAGA
CATGCCCATGACAGCCTTGATCAGGAATCTCGGCAAAATGACCAGCCTTG
GGCTCTTTGATGATCCAGCAAACAGAGAAATCGTCAAGAAGGTTTTAGGA
GATGGCTCTATTTTGAACAAAGCAAGAATTCACCCAGTCAAGGTTTGCTA
TTTATTTAGAGTGATGGCCAAGGCGCATAAACCAGGGGTTCAATGCTTCT
TTCTATGTTCCGATATTGAATAGGCTTTTTTCGAGCCCTTTTAGTTTTGG
CGCACGTTTTCTACACGACAATAAAAGCCGTGTGTAAATTTATGGAAACA
AGACATATCTTTTTGCTTTTTGGTGATATTTAACGTTGAATTTCCACAGT
CTTAAGGCCGGTCTCGCGCTGCTATCGCATTTTTTGGCTTCAGTGCTTTT
TGCTTGGATAAAAGATTGCGTCATAAAAATGTAGTGCGCGCTCGAAAAAA
AACTTTTTTCAACCGTTACGTCAGATCGCGCCAATGGAGTTGCTTCATTT
TTCTTTTGACCAATAGAGTGGAAGCTTCGCTCGAAAAAGTGCGATCAAAG
CACGCGAAAGTGGAGACCGGCCTTTACACTGCACCTTACATGAATGATCA
AATACCAACTATATATCCATGAAGGGAAAAGTAGAAGACTGTTTCTTACT
TGATGAATTTGTAAGTGATGCACCGTGATTGAACCTGTAAGTAATGCACC
CTGATTGAACCTGTGAGTAAAGCACCCTGATTGAACCTTGTTTCAGATTC
TGTTAGCATCAAAGATGTATGAGCAAGGCCATGGTGATCAAGGCCAAAGC
CATCAACCACAACAAGAATATCCAACAATGAGTCTTTCTCAACAACTACG
ACAACAACGACAACGACAACAACAGCCACAACAACCACAACAACGAGTAC
CAACCAAAGAACCACTTACTTGGATACCAAACGCTGAAATCTCCAAAGCT
CTCAATGATGCTTTCTACTTAAGTTTCAGGGTAAGCTCTACTTTAGAGAT
GCAAGCATGGTTAACATAGTCAATCATTCTGGTATAGCGAATTCCTATGG
CTCATTTGAACTTTTATATACTTGCTAAAATTGATTAGTCTTCTAGAGAA
TCTCTTTTAATATTTCCATAGCAACCCGGCAAGAATTCTTCCTTCCGTAC
GGACAAAAAGTTCATGTTAAATCTGGATGTTAGTGGCTCTATGGATTGGC
GTAACTGTGTAGGGTGTGATTTCCTGACGCCCGCTGCCGCCTCTTTCGCC
CTGGCCATGATTACGATGAAAGTTGAGCCACATTGTAGCGTGTTCGCTTT
CGGGCGCACGCTTCAAAATATCGATCATTTATTGAAGAGGGATATGACCA
TCCGTGAAGCCATTCAATTGGGACGCTCTGTAAGTCGACTTCACTATCAA
GAAATCTCGTTTTGAATTATTCTCATTTCTTTATTTCTTCGAACTTGTGT
CTTACCTAAATCAGAATATACATCATTCTCAAAAAGTCAAAAATGTCTAC
GGTTGACTCTCGCTAATTCCGAATTATATTTGAATCTTTCTAGAGTTTAA
ANTTTTTCTCTTTATTTCTTCGAACTTGGGCCTCACATAAAACAGAACAT
CATTCTTAAAACGTCAAAAATGTCTACGGTTGACTCTCGCTAATTCCGAA
TTATATTTGAATTTTTCTAGAGTTCGAACTAATTCCCAGTCTCCATCAAC
GTAGAAGCCTCTTCATTTCGAATATTTCTGTAATTCGAGCAAATCAGACT
TCCCTTTCGACTTTGAATGAGCGAGACTAAAATATATTTAAAAATCGACT
TCCATGTCAATAGTTTAATTCCAAAATTTTCTGTGCTTCTTTTATCAGTG
ATGTCATCATACCTCATTAACTTAGACCATCCGTATATCTTTCAGATCAA
CTTTGGTGCAACAGACTGTGCTCTACCAATGGTGCATGCCACGCAGAACA
GACTGGATGTGGACGTTTTCATTGTTTACACTGACTCCGAAACTTGGGTT
GGAAAAGTTCATCCTTCTGAAGCTTTGAAGAATTATCGTCTAAAGATGAA
CAAACCGGATGCCAAACTCATTGTTATGGCAATGCAGGTTTGTCTGTTCT
CCATTTCACGGCCTGTAATGCTGGAATATATGCAGTCTGTTCCTCTAAAG
AATCCTGCATTGTAACACGCATGCTTAATTTGTCGTTCTTTAAACCATAT
ATTATATAGTTAATTCCCGTGATAAACAAAGAAGAATGAATCTGTAGGGT
TGGTACAAGTCACTTTCAGTCGGGGCTGTGGACGGCGAAATATGTCGTTT
TTTATGAAATTTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTCG
TTAGATAAACCCCTCATGATATTATGATATCTCGTTATAAAAAGTGATGG
CATGAATTCATTTCAGTCGGTTTCAATCCTGTAAAACCTTAAAAACACAC
GGTGAATAGTTCATCAACTTCTAGTTATTAGAATTCTGTAGATAACCCTT
TTCTTTTTCATTGTATTTGAACTTTTCGCACACTTGGGATTGTTGTGGTG
CATACAAAGACCTTTTTACTTCTCTTCATTTTTCAAGGTGAATGATTTCA
CGATTGCCGATCCACTTGATCGCGGTATGTTTGACGTTTGCGGATTCGAC
TCTAACGTACCTGATATGATCTGCGAGATCGCCAGAGGAAATATGTCTTA
AAATCACCAAACAAAGAGAAACGAAATCTAAACCTTTCTGGTTAGCCTTT
GTTTACATGGCTCTAGCTGCTGGTGATTTGGTGCTGGTGGTCTTAACATT
CATATCGGGAAAAATGGAATTGATACATTATCAACCAGCGCAGCAAAGAG
AATGACCATCATTGACTTATTGCAGGGTCCTTGGATTACTGGACAGGTGG
GTCAAGCAGGTGATACGAGTTCTGTTGTTCACTGACTGAGAAGATTCGCA
GATTAGGACCCGTGTTTTTCAGTAACCTGTTTTGGCACTAAATGCAAAGG
TAGAAACTTTTAAACACGTCCTATTCTATAATTTTACATAAATAATAGTT
TTGTTGAGCGACTGGAGTCACCTTTTCGTGAATCTTTGGTTTGTCAGGGG
GTTAAACCAACGTAGCCGAATGCCCTTCTATCAGCGGTACAAACCGTAAA
CTGTATCAGCTGCTTGACCCACCCTATTGACACTATGCTATCCTTTGGTA
AATCCAAAGGCAAAGGCATGAACGAATATGAACATTAATTGACATAAGAT
TCAAATGATGTATGGAAGCTAATACAAATGTTATTCGTAGATATTATTTG
GATCAAGGGATAATTTAATAATAACAATGCTTGTTTTTGTATCATGTATT
CAGTGTTTTATGCTTTTAACCATCTTTTTATACGGTCCATTTTAATTTGT
ATACATAACTTCAACTAGGGTATAAACCTCTCGGATGGCTTCCTGGCACA
AAGTAAGTTTGTTTTTTGGTAAGTTCAGGAAGTAGACAAAGATTTTGTTT
GAAAGACTCAGTCCAGGGTTTGCTTGTTAGTTTGTAGTTTTTCAATAGAT
TTTATTATATTATTTCATTTACGCCTTATATTTGATTACTGTATTGTCTA
AACAATACTGCATGTTGCTATTCTGCGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044129	XLOC_044129	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:1021292..1036769 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000359202	0	0	1.10401	0.334822	2.54672	1.20695	0	0	0	0	0	0	5.63711e-06	0.215269	0.13188	1.24624	0	0	0.014401	0.020352	0.0255369	0.172272	0.355726	0.0943437	0.588409	3.66753e-07	0.0325146	0.000139682

Blast

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BLAST of TCONS_00071015 vs. Swiss-Prot (Human)
Match: RO60 (60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens GN=TROVE2 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 6.095e-69
Identity = 164/485 (33.81%), Postives = 248/485 (51.13%), Query Frame = 3

Query:  900 WGRARRRGVGNFYTDSSKDANRLLLLMTKYKQRHNWNHVQTLGYCHPKMTGDEEQVKNIVLQYCTRGXXXXXXXXXXXXIDGNQPMDPITSQILQHIKVLEEVKNLKPDVPADVERLLQLLHQYGIREVPQEFEVDAAGQMVQVENTQRKKCSFQLTREHLPNGFQKLKEVWVALLQDMPMTALIRNLGKMTSLGLFDDPANREI--VKKVLGDGSILNKARIHPVKILLASKMYEQGHGDQGQSHQPQQEYPTMXXXXXXXXXXXXXXXXXXXXXXVPTKEPLTWIPNAEISKALNDAFYLSFR--QPGKNSSFRTDKKFMLNLDVSGSMDWRNCVGCDFLTPAAASFALAMITMKVEPHCSVFAFGRTLQNIDHLLKRDMTIREAIQLGRSINFGATDCALPMVHATQNRLDVDVFIVYTDSETWVGKVHPSEALKNYRLKMNKPDAKLIVMAMQVNDFTIADPLDRGMFDVCGFDSNVPDMI 2342
            WGRA R+ + ++Y +  K    L L +TKYKQR+ W+H   L   H K + +      IV +Y T+G +++ +      +   + +   T ++L++++ +E+VK  + ++      ++ L+ ++                              +L REHL     K KEVW ALLQ+MP+TAL+RNLGKMT+  + + P N E+  V + L +  +L KARIHP  IL+A + Y+ GHG +G+                                       L W P+ EI KAL+ AFY +F+  +P       T K+F+L +DVS SM+ R  V    L  +  + A+ M+  + E    V AF   +  +   +  DMT+++ +     I  G TDC+LPM+ A +     DVFIV+TD+ET+ G VHP+ AL+ YR KM+ P AKLIV  M  N FTIADP DRGM D+CGFD+   D+I
Sbjct:  144 WGRALRKAIADWYNE--KGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEG---LAIVTKYITKGWKEVHE------LYKEKALSVETEKLLKYLEAVEKVKRTRDEL-----EVIHLIEEH------------------------------RLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLE-PGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGK---------------------------------------LKWRPDEEILKALDAAFYKTFKTVEP-------TGKRFLLAVDVSASMNQR--VLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEM--VPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIP-AKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVI 530

The following BLAST results are available for this feature:

BLAST of TCONS_00071015 vs. Swiss-Prot (Human)

BLAST of TCONS_00071015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RO60	6.095e-69	33.81	60 kDa SS-A/Ro ribonucleoprotein OS=Homo sapiens G...	[more]

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TCONS_00071015 (transcript) - C. hemisphaerica