TCONS_00071037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071037
Unique NameTCONS_00071037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071037 ID=TCONS_00071037|Name=TCONS_00071037|organism=Clytia hemisphaerica|type=transcript|length=731bp
TAAGACCAAGTTTTTAATAATTTCATCTTTTGACAAAGTAGATATCTTGC
GTGCATATTGAAACTTGGACATTTTTGTGGCGTGTGGACTAGCATGAAGT
CAAAGCTTTGAGAGTTCTTGATGGCAGAGCTCCCTTTCtgataaaattta
gaaatttagtttCGTAATAGAATTATTCTTTATTTAGAGCTAAGCAATAA
GTAATGCTGCTAAAGGCTGTGTTACGaatatttttcgtgattttttacAT
CACTCAATTAAGatgtgaaaacaaaaaaacGAACGCCCAACCGAAGATCT
TAACCGATGATGGTCACATTAAATTTCAATCGGCCAAAAATCGGAATATT
TCCTTTGAGCTTGAGGGTGCAGATGCGGACGTGCAGTTCGGCGATACTAg
tatcaaagaaataaaaaattccCTGGACAGTCATTCGTCAGATATCAAGA
AACTCATCCAGGTTGGAGAGAACCGCGCATGCGCCAAAAGTAATCCTTGT
GGAGAAAACGGTGTTTGTGTGGATGCTTTaacaaccaatcaaaatcaGGA
TGGTTACAGATGTGTCTGCAGAGGGATATACAAAGGCAAACATTGTGAGC
AAACAGATCCATGTCTAGCTTTGACATGCGCCAATGGTGGAGAGTGCCAA
GAAATTGGTGGGAGAGCTATTTGTGTTTGTTCTGCGCAATGGTTTGGTGC
AACCTGCAGTGTTCCTAAACCACAAGGTATG
Run BLAST on NCBI

protein sequence of TCONS_00071037-protein

>TCONS_00071037-protein ID=TCONS_00071037-protein|Name=TCONS_00071037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MLLKAVLRIFFVIFYITQLRCENKKTNAQPKILTDDGHIKFQSAKNRNIS
FELEGADADVQFGDTSIKEIKNSLDSHSSDIKKLIQVGENRACAKSNPCG
ENGVCVDALTTNQNQDGYRCVCRGIYKGKHCEQTDPCLALTCANGGECQE
IGGRAICVCSAQWFGATCSVPKPQGM
Run BLAST on NCBI

transcript from alignment at scaffold_58:1148166..1150959-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071037 ID=TCONS_00071037|Name=TCONS_00071037|organism=Clytia hemisphaerica|type=transcript|length=2794bp|location=Sequence derived from alignment at scaffold_58:1148166..1150959- (Clytia hemisphaerica)
TAAGACCAAGTTTTTAATAATTTCATCTTTTGACAAAGTAGATATCTTGC
GTGCATATTGAAACTTGGACATTTTTGTGGCGTGTGGACTAGCATGAAGT
CAAAGCTTTGAGAGTTCTTGATGGCAGAGCTCCCTTTCTGATAAAATTTA
GAAATTTAGTTTCGTAATAGAATTATTCTTTATTTAGAGCTAAGCAATAA
GTAATGCTGCTAAAGGCTGTGTTACGAATATTTTTCGTGATTTTTTACAT
CACTCAATTAAGATGTGAAAACAAAAAAACGTAAGTTTACCATCCCTTAC
CCAAGTACCCCAAAATAACTTCTTCAAATTTACAGCTCTTTTACTACGAT
CTTGTCTTAGTGTTATTTTATAATTTTGAATCTCCTAGTTCGTTTTTTCG
GGGTTTCTTTCTGACTAACCGTCATTAGCGTGGTGGCAGGGAGGGGCAAT
TACGGCGGATTTTTTAGGGGCGGCGCGCCGAAAGACAAGGGTCGGAAACA
GGCGCCTCTGATTACAAATTTTGGCGCCTTTTACTTTTATACGCCTTAAA
ATTAACAGTTTTTCAGCTAAAAAAAAAAAAAACCCAAAAGATTTTGTCGA
ACCACCACGTGGCTAACCTTCCAATGCTAAACGTTCTTAACAGAAGAATG
TTTGAAAATAACACATTGCACGAGGTAGACCATACTGACTTTTTTTAACC
TCAATTTTTAGGAACGCCCAACCGAAGATCTTAACCGATGATGGTCACAT
TAAATTTCAATCGGCCAAAAATCGGAATATTTCCTTTGAGCTTGAGGGTG
CAGATGCGGACGTGCAGTTCGGCGATACTAGTATCAAAGAAATAAAAAAT
TCCGTAAGAAAGAAAAAATTTTCCGACTTTTATCTAATTTCTTTGTTTAA
TTTTTAAGAATTTTTCTATTCTACTTTTAACTAGCCTATATTAGGCCGTG
GTCAGTGGATGGTTAAAGCTTCAAAAATAAAGAAAAAAAGTTTTTGACCA
CAAATATGCCCATAACCTTTGATCAAGAAAAGCTGGGACTTTGATGTAAT
AGACTTTTTTGCTCAGTTTGAAGAGCTCTATCACGTGGTATAGGTCTTTT
TTGATTTTGAACACCCCCCAAAAATCACAAATTTTCAGGGCTTACAATTT
TGCCTGAAATCGCAAAAAATCGCAAATTACACAAAAACTGCGGGTTTTCA
AGCTTGGTAACATTNTTTTAAACCCCCCCCCCCCCAAAAAAAAAAATATT
ATATGAATTTTCAGGCCTTGCAATTTTGACTGGAAACGCAAAAATCGAAA
ATTGTGCAAAAACTGCGGTTTTTCAAGCTTGGTAACATTTAAATTCCGAA
TCAAAACCCTCAAATTGACCCAAAATCAATTATAAAAGCTTGGATAAGGA
CATTTTAAAACTTTTTGGTGGCACTGGCCATGGCCTATATGTGGAGAGTT
GGAAAACTTTATTTCCTTGTAAATATGAGTACACCGGCCTATTTCGTGGT
ACAGAATTTTTCCTGGCATTGTTTTGTTTAATATTCTTCTTACAGCTGGA
CAGTCATTCGTCAGATATCAAGAAACTCATCCAGGTAAACTGGCGCTGTG
CTTTTTGTAATTCAGTTTTTGAGACTCTTTTTGACGACGAGGGAGATTGT
CACAATTAAGCACCCTGTCGTGTGCAGAGTCACTTAGTTTGTATTGTATG
CGTTTTATTTTTCGGTGTCATCCTGTGTGCACTGAGGGCGTTCGTTCAAA
ACACATAGCATGTGACCTCATCTTCTTGCACAGCTCTCCCTCGCTCAATT
GGATTGGCTCAACACCATGTATCTATTAATTATGTTGTTGTCCAACCATT
AATTCTGCTAATGACCTGACTTTGAAATCACAGTCATTGTGTTTAATTAT
CGAGGCGTCTTTTCAACAAAATTCCTTTCTATTTGTGAGAATTTTACGAC
CTCAAAATGACAAGGCATGTTTTTATTCCGACCCAGGACTTCGCCTACAA
TTAGACCTACGACAAATAAAGAGTAATGGAGTAACCACGACACTTGACCA
TTAACTGGTGATTTTGGTCCCCAATAAAATTCTTTCGTTTTTCTCTCTTC
AAATTTTTCACTTTCACTTTCGTTTTTACAGGTTGGAGAGAACCGCGCAT
GCGCCAAAAGTAATCCTTGTGGAGAAAACGGTGTTTGTGTGGATGCTTTA
ACAACCAATCAAAATCAGGTACTGAAGACGTCTCGTGAAGATTTCATTTC
TCCATGTTTTGTAAAAACCTGTCCTGTTAATTCTTAATGAAAACGATTTT
AAACCCTACCCGAATAAAAAAGTCAAAAGTAATTTTCTGTTAGTTGAGGC
GTGGTTGGTCCAATTGATGGGCTTTACGTTTTTTATGAAAATATCCAAAA
TTTTGAAGCCTAAAAATGTTCTTTACATGTTCCTATTTTCACCATTTTGT
GAGTATTTTTGCTCTATTTTCCTAAGAAAGTAAGTGTTTGGGGACCCTAC
CTAAAGCCTTAAAATGCTCTTAACTCGTTCTTAACATTTTGGCCACGGAA
GCCTTATGTTCTTATATATTTTGTTCTTAAAAAAACGGTCAGTTTTTCTC
TCCCATCATAGGATGGTTACAGATGTGTCTGCAGAGGGATATACAAAGGC
AAACATTGTGAGCAAACAGATCCATGTCTAGCTTTGACATGCGCCAATGG
TGGAGAGTGCCAAGAAATTGGTGGGAGAGCTATTTGTGTTTGTTCTGCGC
AATGGTTTGGTGCAACCTGCAGTGTTCCTAAACCACAAGGTATG

Coding sequence (CDS) from alignment at scaffold_58:1148166..1150959-

>TCONS_00071037 ID=TCONS_00071037|Name=TCONS_00071037|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_58:1148166..1150959- (Clytia hemisphaerica)
GATGGTTACAGATGTGTCTGCAGAGGGATATACAAAGGCAAACATTGTGA
GCAAACAGATCCATGTCTAGCTTTGACATGCGCCAATGGTGGAGAGTGCC
AAGAAATTGGTGGGAGAGCTATTTGTGTTTGTTCTGCGCAATGGTTTGGT
GCAACCTGCAGTGTTCCTAAACCACAAGGTATGGTTGGAGAGAACCGCGC
ATGCGCCAAAAGTAATCCTTGTGGAGAAAACGGTGTTTGTGTGGATGCTT
TAACAACCAATCAAAATCAGCTGGACAGTCATTCGTCAGATATCAAGAAA
CTCATCCAGGAACGCCCAACCGAAGATCTTAACCGATGATGGTCACATTA
AATTTCAATCGGCCAAAAATCGGAATATTTCCTTTGAGCTTGAGGGTGCA
GATGCGGACGTGCAGTTCGGCGATACTAGTATCAAAGAAATAAAAAATTC
CATGCTGCTAAAGGCTGTGTTACGAATATTTTTCGTGATTTTTTACATCA
CTCAATTAAGATGTGAAAACAAAAAAACGATGGTTACAGATGTGTCTGCA
GAGGGATATACAAAGGCAAACATTGTGAGCAAACAGATCCATGTCTAGCT
TTGACATGCGCCAATGGTGGAGAGTGCCAAGAAATTGGTGGGAGAGCTAT
TTGTGTTTGTTCTGCGCAATGGTTTGGTGCAACCTGCAGTGTTCCTAAAC
CACAAGGTATGGTTGGAGAGAACCGCGCATGCGCCAAAAGTAATCCTTGT
GGAGAAAACGGTGTTTGTGTGGATGCTTTAACAACCAATCAAAATCAGCT
GGACAGTCATTCGTCAGATATCAAGAAACTCATCCAGGAACGCCCAACCG
AAGATCTTAACCGATGATGGTCACATTAAATTTCAATCGGCCAAAAATCG
GAATATTTCCTTTGAGCTTGAGGGTGCAGATGCGGACGTGCAGTTCGGCG
ATACTAGTATCAAAGAAATAAAAAATTCCATGCTGCTAAAGGCTGTGTTA
CGAATATTTTTCGTGATTTTTTACATCACTCAATTAAGATGTGAAAACAA
AAAAACGATGGTTACAGATGTGTCTGCAGAGGGATATACAAAGGCAAACA
TTGTGAGCAAACAGATCCATGTCTAGCTTTGACATGCGCCAATGGTGGAG
AGTGCCAAGAAATTGGTGGGAGAGCTATTTGTGTTTGTTCTGCGCAATGG
TTTGGTGCAACCTGCAGTGTTCCTAAACCACAAGGTATGGTTGGAGAGAA
CCGCGCATGCGCCAAAAGTAATCCTTGTGGAGAAAACGGTGTTTGTGTGG
ATGCTTTAACAACCAATCAAAATCAGCTGGACAGTCATTCGTCAGATATC
AAGAAACTCATCCAGGAACGCCCAACCGAAGATCTTAACCGATGATGGTC
ACATTAAATTTCAATCGGCCAAAAATCGGAATATTTCCTTTGAGCTTGAG
GGTGCAGATGCGGACGTGCAGTTCGGCGATACTAGTATCAAAGAAATAAA
AAATTCCATGCTGCTAAAGGCTGTGTTACGAATATTTTTCGTGATTTTTT
ACATCACTCAATTAAGATGTGAAAACAAAAAAACGATGGTTACAGATGTG
TCTGCAGAGGGATATACAAAGGCAAACATTGTGAGCAAACAGATCCATGT
CTAGCTTTGACATGCGCCAATGGTGGAGAGTGCCAAGAAATTGGTGGGAG
AGCTATTTGTGTTTGTTCTGCGCAATGGTTTGGTGCAACCTGCAGTGTTC
CTAAACCACAAGGTATGGTTGGAGAGAACCGCGCATGCGCCAAAAGTAAT
CCTTGTGGAGAAAACGGTGTTTGTGTGGATGCTTTAACAACCAATCAAAA
TCAGCTGGACAGTCATTCGTCAGATATCAAGAAACTCATCCAGGAACGCC
CAACCGAAGATCTTAACCGATGATGGTCACATTAAATTTCAATCGGCCAA
AAATCGGAATATTTCCTTTGAGCTTGAGGGTGCAGATGCGGACGTGCAGT
TCGGCGATACTAGTATCAAAGAAATAAAAAATTCCATGCTGCTAAAGGCT
GTGTTACGAATATTTTTCGTGATTTTTTACATCACTCAATTAAGATGTGA
AAACAAAAAAACGATGGTTACAGATGTGTCTGCAGAGGGATATACAAAGG
CAAACATTGTGAGCAAACAGATCCATGTCTAGCTTTGACATGCGCCAATG
GTGGAGAGTGCCAAGAAATTGGTGGGAGAGCTATTTGTGTTTGTTCTGCG
CAATGGTTTGGTGCAACCTGCAGTGTTCCTAAACCACAAGGTATGGTTGG
AGAGAACCGCGCATGCGCCAAAAGTAATCCTTGTGGAGAAAACGGTGTTT
GTGTGGATGCTTTAACAACCAATCAAAATCAGCTGGACAGTCATTCGTCA
GATATCAAGAAACTCATCCAGGAACGCCCAACCGAAGATCTTAACCGATG
ATGGTCACATTAAATTTCAATCGGCCAAAAATCGGAATATTTCCTTTGAG
CTTGAGGGTGCAGATGCGGACGTGCAGTTCGGCGATACTAGTATCAAAGA
AATAAAAAATTCCATGCTGCTAAAGGCTGTGTTACGAATATTTTTCGTGA
TTTTTTACATCACTCAATTAAGATGTGAAAACAAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044135XLOC_044135Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071037-proteinTCONS_00071037-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071037-exon-scaffold_58-1575043694:1150680..1150959TCONS_00071037-exon-scaffold_58-1575043694:1150680..1150959Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1575043694:1150107..1150248TCONS_00071037-exon-scaffold_58-1575043694:1150107..1150248Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1575043694:1149376..1149414TCONS_00071037-exon-scaffold_58-1575043694:1149376..1149414Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1575043694:1148742..1148828TCONS_00071037-exon-scaffold_58-1575043694:1148742..1148828Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1575043694:1148166..1148348TCONS_00071037-exon-scaffold_58-1575043694:1148166..1148348Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1510915933:1150680..1150959TCONS_00071037-exon-scaffold_58-1510915933:1150680..1150959Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1510915933:1150107..1150248TCONS_00071037-exon-scaffold_58-1510915933:1150107..1150248Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1510915933:1149376..1149414TCONS_00071037-exon-scaffold_58-1510915933:1149376..1149414Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1510915933:1148742..1148828TCONS_00071037-exon-scaffold_58-1510915933:1148742..1148828Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1510915933:1148166..1148348TCONS_00071037-exon-scaffold_58-1510915933:1148166..1148348Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1491911889:1150680..1150959TCONS_00071037-exon-scaffold_58-1491911889:1150680..1150959Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1491911889:1150107..1150248TCONS_00071037-exon-scaffold_58-1491911889:1150107..1150248Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1491911889:1149376..1149414TCONS_00071037-exon-scaffold_58-1491911889:1149376..1149414Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1491911889:1148742..1148828TCONS_00071037-exon-scaffold_58-1491911889:1148742..1148828Clytia hemisphaericaexon
TCONS_00071037-exon-scaffold_58-1491911889:1148166..1148348TCONS_00071037-exon-scaffold_58-1491911889:1148166..1148348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:1148166..1150959 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15541	0.797465	0.370373	0.677583	1.54395	1.1329	9.52439	8.85865	5.30629	9.13348	8.03666	9.3133	2.39307	6.2433	1.0216	0.647832	12.4623	9.56434	0.782387	0.363872	19.6878	15.388	2.25036	1.96066	7.98993	6.81738	7.28871	3.4705	0.272302	0.461143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR013111EGF_extracell
IPR013032EGF-like_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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