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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071114 ID=TCONS_00071114|Name=TCONS_00071114|organism=Clytia hemisphaerica|type=transcript|length=1367bp
CATTATTCTCGCATTGTTAACCGTATTGTATTACAAAGACGTCTTTAAAG
GAATGACATCCATAATCTGTTGTTGCTCCCCCGCACATCCGTTGGAAGAA
ATGACTGATTCAGATCCTGAAGAAAACACGCTGGCTTCACCTCTCTTAAT
GAGCAGAGAAGTTGAACGACGATCACAAAACCAACAAATATCTGTCACAT
TCTCTGGAGCTGTCAAGATCGCTTTCTTTTTCTACCAGACAGCTTCTATC
ATCCGGATCAATGCACCTGCGAAAATGGAATATCGCATGCCTTATATCAT
CGAAATTTTAACTTCTTTCTTTAATGTGAAAATAGATATTGGATCTGCTG
ATTTGATCGACATTTGTCCACTGCAAACGAAAAATGTTACTCTAATAGAA
CTCATCCGATTGAGTGTTATCTTCGGTATGATTCTCTTGGTGATTGTCGT
GATGTTCGTGTTGTACTTGTATCGACGGTACCGAAATATTCGACACCAGA
CCTCTTTCTTTGCTGTTAGATTGAAAGTGACCCACATCCAGTTGTTGGTT
ATCGGTTATGCCAGCATTGCCACGTTTTGCATCCAATCCGTGGACTGTAT
CCATATTGATGGTGAATGGTACATTTTCAACCAAGCTCATTTGAAGTGTT
TCCAAAGCTGGCAGATTGTTATCATCCTTCTCATCGTTTTGTGGGTGATA
CCCTTCCCTGTGGTGCTCTATATCGGTTGTAAATTGTTGAGAACTGGACA
GATAACACCGAATCAGTACTTTATTAGTCTGATGTCTCCACCCTTACTGC
CCGTTTTCATGATCAGAAGCTATTGCATTGACGATCGAGCATGGGTAGAC
CAACAGAAAATGGAGCGAAATAGCATACTTGCGTTTCTTAATGAACCTTT
CAGAGAGAGTGAAACCAAGGATGGAGGATTGGAGCGAATTATTTGGGAAC
CTGTGTTTATTGTGCGCCGATTGATTCTGGTTGTTACAACCACGTTCGTC
CGTTCTCCGATCTTAAAACTGTACCCTGCTGGAGTCATGTTGATTTTATT
TACCTTACATGATTATCTTACAAAGCCGTTTGTTAAGCCAAAACTCAATT
TCGTTCAATTGGTATCTATGTTGCTTCTGGTGACTCTTACCCTTTTCAAC
ATGTTCTGGGCTCTCTCCATAAACGTTGATATTCTGGAGAGTTTAGAGTA
TCGTAtatttggaaaacttttacTTATTCTTGAATTGTGTATTTTGTTGA
GCCCCTTCTTTCTCCTGGTAATGGCTTTTATTGGGAAGATGGGAAAAGCG
TTGTATAAAGCATGTCTCCGGACAAAATTGGACTGAATTTGTTTATATTC
TTTTGTTATGATTAgga Run BLAST on NCBI protein sequence of TCONS_00071114-protein >TCONS_00071114-protein ID=TCONS_00071114-protein|Name=TCONS_00071114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
IILALLTVLYYKDVFKGMTSIICCCSPAHPLEEMTDSDPEENTLASPLLM
SREVERRSQNQQISVTFSGAVKIAFFFYQTASIIRINAPAKMEYRMPYII
EILTSFFNVKIDIGSADLIDICPLQTKNVTLIELIRLSVIFGMILLVIVV
MFVLYLYRRYRNIRHQTSFFAVRLKVTHIQLLVIGYASIATFCIQSVDCI
HIDGEWYIFNQAHLKCFQSWQIVIILLIVLWVIPFPVVLYIGCKLLRTGQ
ITPNQYFISLMSPPLLPVFMIRSYCIDDRAWVDQQKMERNSILAFLNEPF
RESETKDGGLERIIWEPVFIVRRLILVVTTTFVRSPILKLYPAGVMLILF
TLHDYLTKPFVKPKLNFVQLVSMLLLVTLTLFNMFWALSINVDILESLEY
RIFGKLLLILELCILLSPFFLLVMAFIGKMGKALYKACLRTKLD Run BLAST on NCBI transcript from alignment at scaffold_58:1282672..1284038 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071114 ID=TCONS_00071114|Name=TCONS_00071114|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_58:1282672..1284038 (Clytia hemisphaerica)
tccTAATCATAACAAAAGAATATAAACAAATTCAGTCCAATTTTGTCCGG
AGACATGCTTTATACAACGCTTTTCCCATCTTCCCAATAAAAGCCATTAC
CAGGAGAAAGAAGGGGCTCAACAAAATACACAATTCAAGAATAAgtaaaa
gttttccaaataTACGATACTCTAAACTCTCCAGAATATCAACGTTTATG
GAGAGAGCCCAGAACATGTTGAAAAGGGTAAGAGTCACCAGAAGCAACAT
AGATACCAATTGAACGAAATTGAGTTTTGGCTTAACAAACGGCTTTGTAA
GATAATCATGTAAGGTAAATAAAATCAACATGACTCCAGCAGGGTACAGT
TTTAAGATCGGAGAACGGACGAACGTGGTTGTAACAACCAGAATCAATCG
GCGCACAATAAACACAGGTTCCCAAATAATTCGCTCCAATCCTCCATCCT
TGGTTTCACTCTCTCTGAAAGGTTCATTAAGAAACGCAAGTATGCTATTT
CGCTCCATTTTCTGTTGGTCTACCCATGCTCGATCGTCAATGCAATAGCT
TCTGATCATGAAAACGGGCAGTAAGGGTGGAGACATCAGACTAATAAAGT
ACTGATTCGGTGTTATCTGTCCAGTTCTCAACAATTTACAACCGATATAG
AGCACCACAGGGAAGGGTATCACCCACAAAACGATGAGAAGGATGATAAC
AATCTGCCAGCTTTGGAAACACTTCAAATGAGCTTGGTTGAAAATGTACC
ATTCACCATCAATATGGATACAGTCCACGGATTGGATGCAAAACGTGGCA
ATGCTGGCATAACCGATAACCAACAACTGGATGTGGGTCACTTTCAATCT
AACAGCAAAGAAAGAGGTCTGGTGTCGAATATTTCGGTACCGTCGATACA
AGTACAACACGAACATCACGACAATCACCAAGAGAATCATACCGAAGATA
ACACTCAATCGGATGAGTTCTATTAGAGTAACATTTTTCGTTTGCAGTGG
ACAAATGTCGATCAAATCAGCAGATCCAATATCTATTTTCACATTAAAGA
AAGAAGTTAAAATTTCGATGATATAAGGCATGCGATATTCCATTTTCGCA
GGTGCATTGATCCGGATGATAGAAGCTGTCTGGTAGAAAAAGAAAGCGAT
CTTGACAGCTCCAGAGAATGTGACAGATATTTGTTGGTTTTGTGATCGTC
GTTCAACTTCTCTGCTCATTAAGAGAGGTGAAGCCAGCGTGTTTTCTTCA
GGATCTGAATCAGTCATTTCTTCCAACGGATGTGCGGGGGAGCAACAACA
GATTATGGATGTCATTCCTTTAAAGACGTCTTTGTAATACAATACGGTTA
ACAATGCGAGAATAATG Coding sequence (CDS) from alignment at scaffold_58:1282672..1284038 >TCONS_00071114 ID=TCONS_00071114|Name=TCONS_00071114|organism=Clytia hemisphaerica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_58:1282672..1284038 (Clytia hemisphaerica)
TCAGTCCAATTTTGTCCGGAGACATGCTTTATACAACGCTTTTCCCATCT
TCCCAATAAAAGCCATTACCAGGAGAAAGAAGGGGCTCAACAAAATACAC
AATTCAAGAATAAgtaaaagttttccaaataTACGATACTCTAAACTCTC
CAGAATATCAACGTTTATGGAGAGAGCCCAGAACATGTTGAAAAGGGTAA
GAGTCACCAGAAGCAACATAGATACCAATTGAACGAAATTGAGTTTTGGC
TTAACAAACGGCTTTGTAAGATAATCATGTAAGGTAAATAAAATCAACAT
GACTCCAGCAGGGTACAGTTTTAAGATCGGAGAACGGACGAACGTGGTTG
TAACAACCAGAATCAATCGGCGCACAATAAACACAGGTTCCCAAATAATT
CGCTCCAATCCTCCATCCTTGGTTTCACTCTCTCTGAAAGGTTCATTAAG
AAACGCAAGTATGCTATTTCGCTCCATTTTCTGTTGGTCTACCCATGCTC
GATCGTCAATGCAATAGCTTCTGATCATGAAAACGGGCAGTAAGGGTGGA
GACATCAGACTAATAAAGTACTGATTCGGTGTTATCTGTCCAGTTCTCAA
CAATTTACAACCGATATAGAGCACCACAGGGAAGGGTATCACCCACAAAA
CGATGAGAAGGATGATAACAATCTGCCAGCTTTGGAAACACTTCAAATGA
GCTTGGTTGAAAATGTACCATTCACCATCAATATGGATACAGTCCACGGA
TTGGATGCAAAACGTGGCAATGCTGGCATAACCGATAACCAACAACTGGA
TGTGGGTCACTTTCAATCTAACAGCAAAGAAAGAGGTCTGGTGTCGAATA
TTTCGGTACCGTCGATACAAGTACAACACGAACATCACGACAATCACCAA
GAGAATCATACCGAAGATAACACTCAATCGGATGAGTTCTATTAGAGTAA
CATTTTTCGTTTGCAGTGGACAAATGTCGATCAAATCAGCAGATCCAATA
TCTATTTTCACATTAAAGAAAGAAGTTAAAATTTCGATGATATAAGGCAT
GCGATATTCCATTTTCGCAGGTGCATTGATCCGGATGATAGAAGCTGTCT
GGTAGAAAAAGAAAGCGATCTTGACAGCTCCAGAGAATGTGACAGATATT
TGTTGGTTTTGTGATCGTCGTTCAACTTCTCTGCTCATTAAGAGAGGTGA
AGCCAGCGTGTTTTCTTCAGGATCTGAATCAGTCATTTCTTCCAACGGAT
GTGCGGGGGAGCAACAACAGATTATGGATGTCATTCCTTTAAAGACGTCT
TTGTAATACAATACGGTTAACAATGCGAGAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071114-exon-scaffold_58-1491911889:1282672..1284038 | TCONS_00071114-exon-scaffold_58-1491911889:1282672..1284038 | Clytia hemisphaerica | exon |
| TCONS_00071114-exon-scaffold_58-1510915933:1282672..1284038 | TCONS_00071114-exon-scaffold_58-1510915933:1282672..1284038 | Clytia hemisphaerica | exon |
| TCONS_00071114-exon-scaffold_58-1575043694:1282672..1284038 | TCONS_00071114-exon-scaffold_58-1575043694:1282672..1284038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1282672..1284038 . |
Blast
The following BLAST results are available for this feature:
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