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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071068 ID=TCONS_00071068|Name=TCONS_00071068|organism=Clytia hemisphaerica|type=transcript|length=1644bp
TGAAGTTGAATTAGGCGGTAACCGGCAAAATTATCTCTTCATTTCTTTTT
GTTCATCAAAAACAGTGAAACCGTAATCTTATCACCCTGAAGCAATCATA
AAACAGTTTTGGTGTTCTTTTACATGACACCTTAAAATGAATACAAGTAA
TTTAcaacaaaaacttcaaaccaACAACAATTCACACTTTCGATCAATTA
GTTtatacaaaaacattttcttttcgctttcttttcaataaaacaatGAC
ACTTATTCAAAAGGCGGACAGACTTCAATAATTGATCAGAAATTTTGGAG
AACAACCAGGGGGTTTGTTTGGACATAAACATATATAAGGTGTCGCTTAC
ACACTTCATTCCAATCAAAAAATATACAGAGTATGTAAAAACTATTGATA
TTGATCATTCGTGAAATCGTTCGCTGTAACAGATCTTTCAAAACGATACC
ATTCAACTACAAGCTTCACATCTTCACGAGAAATCTTCActttaaaacat
ttcaaatgaAGCAACAGTTGGAGCAGTATCATAACCAAGCAATGATGAAC
GAACTCAAAGTCGAACTACCGTTTAACGATGCAACTTCACCCACACCTAG
CGGCACCGCAGCCACGTCACCCACACACGACGCTTCGAAGCAACCCAGCA
ACAACTCAAGGGCACCCAAATGCACGCGGTGCCGTAACCACGGAGTTATC
AGTGATCTGAGAGGACATAAACACAAATGCTATTGGAGGGATTGCTCATG
TACCAAATGTCTCATTAGCTCTGATCGTCAGAGAGCCACAGCCGATCGCA
TCGCACTTTTCCGACAACAGGTACGACAAATTTCGGCCGAAGACCGACAT
CACCGCCGAGAAAAACGAAAATACAGCAATTTAGACGAAGATGTCAGTTA
TCTTACATCCATGACAACGAAAATTCCATCCCCGAATGCTCACCCACCAT
CCTTACataagatgacgtcatcatcctCCAATCACTGCCCTCCACCACAA
GATTCACCGTATTATTGGAGCGATGAGAAAACCACACGAAACACGCCTGA
AATACTTCGAATGATCTTTCCTTTCTACGAACCGGTAGCCTTGAGCTCCA
TTTCACGTGAAAATAATTACGATTTGTTGCAAAGTGTGCTCTCCATCAGC
TCTTACTTATTGGAAAAACGCCAGTCGTCATCTTCGTATTACCGCCCACC
TCATTCACCTCCACCTCCTCCGCCCTCTTCGTTTTACAAGACTGCGCATG
CTTCAGGACGATGTTGTTCAAGTCCGTACTGTCCAGTCAACTCATACCTA
ACCCTTCGCAAGAAATCACCTGAAATTATGCAGCATCTTCCAACACCACC
ACTGACGGCCGTTTCTCCTTCGTACGACCGCTCGGCCCGCTCTGAAAGAA
GCGAAACAAACCAACCTGTGGCAGAATCGAAACCAAAGAAATTTCGGTTC
TCAACAGATACTGAACTCCCATATTGTGACGCTTGTCAAAAGTTTGGCAT
CAAGGGTGACAAGTTTTGTCCCCTTTGCggcattttattttcaaattgat
aaaaattttataaatacaACAACTATATATTATTTCTgtaaatcttttga
ttttgtgTATATTCTTTGATCTTTGTATATACTGACTCTTAAAA Run BLAST on NCBI protein sequence of Dmrt-E Doublesex and mab-3 related trasncription factor >TCONS_00071068-protein ID=TCONS_00071068-protein|Name=Dmrt-E Doublesex and mab-3 related trasncription factor|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MKQQLEQYHNQAMMNELKVELPFNDATSPTPSGTAATSPTHDASKQPSNN
SRAPKCTRCRNHGVISDLRGHKHKCYWRDCSCTKCLISSDRQRATADRIA
LFRQQVRQISAEDRHHRREKRKYSNLDEDVSYLTSMTTKIPSPNAHPPSL
HKMTSSSSNHCPPPQDSPYYWSDEKTTRNTPEILRMIFPFYEPVALSSIS
RENNYDLLQSVLSISSYLLEKRQSSSSYYRPPHSPPPPPPSSFYKTAHAS
GRCCSSPYCPVNSYLTLRKKSPEIMQHLPTPPLTAVSPSYDRSARSERSE
TNQPVAESKPKKFRFSTDTELPYCDACQKFGIKGDKFCPLCGILFSN Run BLAST on NCBI transcript from alignment at scaffold_58:1479383..1481489- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071068 ID=TCONS_00071068|Name=TCONS_00071068|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at scaffold_58:1479383..1481489- (Clytia hemisphaerica)
TGAAGTTGAATTAGGCGGTAACCGGCAAAATTATCTCTTCATTTCTTTTT
GTTCATCAAAAACAGTGAAACCGTAATCTTATCACCCTGAAGCAATCATA
AAACAGTTTTGGTGTTCTTTTACATGACACCTTAAAATGAATACAAGTAA
TTTACAACAAAAACTTCAAACCAACAACAATTCACACTTTCGATCAATTA
GTTTATACAAAAACATTTTCTTTTCGCTTTCTTTTCAATAAAACAATGAC
ACTTATTCAAAAGGCGGACAGACTTCAATAATTGATCAGAAATTTTGGAG
AACAACCAGGGGGTTTGTTTGGACATAAACATATATAAGGTGTCGCTTAC
ACACTTCATTCCAATCAAAAAATATACAGAGTATGTAAAAACTATTGATA
TTGATCATTCGTGAAATCGTTCGCTGTAACAGATCTTTCAAAACGATACC
ATTCAACTACAAGCTTCACATCTTCACGAGAAATCTTCACTTTAAAACAT
TTCAAATGAAGCAACAGTTGGAGCAGTATCATAACCAAGCAATGATGAAC
GAACTCAAAGTCGAACTACCGTTTAACGATGCAACTTCACCCACACCTAG
CGGCACCGCAGCCACGTCACCCACACACGACGCTTCGAAGCAACCCAGCA
ACAACTCAAGGGCACCCAAATGCACGCGGTGCCGTAACCACGGAGTTATC
AGTGATCTGAGAGGACATAAACACAAATGCTATTGGAGGGATTGCTCATG
TACCAAATGTCTCATTAGCTCTGATCGTCAGAGAGCCACAGCCGATCGCA
TCGCACTTTTCCGACAACAGGTACGACAAATTTCGGCCGAAGACCGACAT
CACCGCCGAGAAAAACGAAAATACAGCAATTTAGACGAAGATGTCAGTTA
TCTTACATCCATGACAAGTAAGTAACTTCTTTGCTTCACATCTTATTCAA
GCTTGTGATTTTCAGAGTGTAGTTTTTGGTTGTTAGGGATTGATGACAAT
AAGAAAAAATTCAAAAGTACGCGAAGCCAAAGTTTGAGGAGGGTGACTAA
ATTTATAAAACATTGATTAGCAGGTCGTAATTCTATAGGTTCTATCAAAA
ATTGGATATATAATTCATGATGGCACCTTGTTTTTACAAAAATAGTTCTT
CATGACACCTGTTCAAAAGTAAACTCTTCTGTTCTATACTTTACTTCATG
ATTGGTGTGATCTACAGTATATTGCTTTCGTATCTTTGCCCCTGATGAAC
AATTAATAAAAACAATACAGTAGTAGCTAAAAATAACTTTTTTTTGGGCT
GTCAAAACATTCAATACATATTTTGAAAATAAAATCTTCTAAAATTCTAA
TGAATGAAAATCCATTTTTTTCACCTTCAGCGAAAATTCCATCCCCGAAT
GCTCACCCACCATCCTTACATAAGATGACGTCATCATCCTCCAATCACTG
CCCTCCACCACAAGATTCACCGTATTATTGGAGCGATGAGAAAACCACAC
GAAACACGCCTGAAATACTTCGAATGATCTTTCCTTTCTACGAACCGGTA
GCCTTGAGCTCCATTTCACGTGAAAATAATTACGATTTGTTGCAAAGTGT
GCTCTCCATCAGCTCTTACTTATTGGAAAAACGCCAGTCGTCATCTTCGT
ATTACCGCCCACCTCATTCACCTCCACCTCCTCCGCCCTCTTCGTTTTAC
AAGACTGCGCATGCTTCAGGACGATGTTGTTCAAGTCCGTACTGTCCAGT
CAACTCATACCTAACCCTTCGCAAGAAATCACCTGAAATTATGCAGCATC
TTCCAACACCACCACTGACGGCCGTTTCTCCTTCGTACGACCGCTCGGCC
CGCTCTGAAAGAAGCGAAACAAACCAACCTGTGGCAGAATCGAAACCAAA
GAAATTTCGGTTCTCAACAGATACTGAACTCCCATATTGTGACGCTTGTC
AAAAGTTTGGCATCAAGGGTGACAAGTTTTGTCCCCTTTGCGGCATTTTA
TTTTCAAATTGATAAAAATTTTATAAATACAACAACTATATATTATTTCT
GTAAATCTTTTGATTTTGTGTATATTCTTTGATCTTTGTATATACTGACT
CTTAAAA Coding sequence (CDS) from alignment at scaffold_58:1479383..1481489- >TCONS_00071068 ID=TCONS_00071068|Name=TCONS_00071068|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_58:1479383..1481489- (Clytia hemisphaerica)
CGAAAATTCCATCCCCGAATGCTCACCCACCATCCTTACATAAGATGACG
TCATCATCCTCCAATCACTGCCCTCCACCACAAGATTCACCGTATTATTG
GAGCGATGAGAAAACCACACGAAACACGCCTGAAATACTTCGAATGATCT
TTCCTTTCTACGAACCGGTAGCCTTGAGCTCCATTTCACGTGAAAATAAT
TACGATTTGTTGCAAAGTGTGCTCTCCATCAGCTCTTACTTATTGGAAAA
ACGCCAGTCGTCATCTTCGTATTACCGCCCACCTCATTCACCTCCACCTC
CTCCGCCCTCTTCGTTTTACAAGACTGCGCATGCTTCAGGACGATGTTGT
TCAAGTCCGTACTGTCCAGTCAACTCATACCTAACCCTTCGCAAGAAATC
ACCTGAAATTATGCAGCATCTTCCAACACCACCACTGACGGCCGTTTCTC
CTTCGTACGACCGCTCGGCCCGCTCTGAAAGAAGCGAAACAAACCAACCT
GTGGCAGAATCGAAACCAAAGAAATTTCGGTTCTCAACAGATACTGAACT
CCCATATTGTGACGCTTGTCAAAAGTTTGGCATCAAGGGTGACAAGTTTT
GTCCCCTTTGCGGCATTTTATTTTCAAATTGAATGAAGCAACAGTTGGAG
CAGTATCATAACCAAGCAATGATGAACGAACTCAAAGTCGAACTACCGTT
TAACGATGCAACTTCACCCACACCTAGCGGCACCGCAGCCACGTCACCCA
CACACGACGCTTCGAAGCAACCCAGCAACAACTCAAGGGCACCCAAATGC
ACGCGGTGCCGTAACCACGGAGTTATCAGTGATCTGAGAGGACATAAACA
CAAATGCTATTGGAGGGATTGCTCATGTACCAAATGTCTCATTAGCTCTG
ATCGTCAGAGAGCCACAGCCGATCGCATCGCACTTTTCCGACAACAGGTA
CGACAAATTTCGGCCGAAGACCGACATCACCGCCGAGAAAAACGAAAATA
CAGCAATTTAGACGAAGATGTCAGTTATCTTACATCCATGACAACGAAAA
TTCCATCCCCGAATGCTCACCCACCATCCTTACATAAGATGACGTCATCA
TCCTCCAATCACTGCCCTCCACCACAAGATTCACCGTATTATTGGAGCGA
TGAGAAAACCACACGAAACACGCCTGAAATACTTCGAATGATCTTTCCTT
TCTACGAACCGGTAGCCTTGAGCTCCATTTCACGTGAAAATAATTACGAT
TTGTTGCAAAGTGTGCTCTCCATCAGCTCTTACTTATTGGAAAAACGCCA
GTCGTCATCTTCGTATTACCGCCCACCTCATTCACCTCCACCTCCTCCGC
CCTCTTCGTTTTACAAGACTGCGCATGCTTCAGGACGATGTTGTTCAAGT
CCGTACTGTCCAGTCAACTCATACCTAACCCTTCGCAAGAAATCACCTGA
AATTATGCAGCATCTTCCAACACCACCACTGACGGCCGTTTCTCCTTCGT
ACGACCGCTCGGCCCGCTCTGAAAGAAGCGAAACAAACCAACCTGTGGCA
GAATCGAAACCAAAGAAATTTCGGTTCTCAACAGATACTGAACTCCCATA
TTGTGACGCTTGTCAAAAGTTTGGCATCAAGGGTGACAAGTTTTGTCCCC
TTTGCGGCATTTTATTTTCAAATTGAATGAAGCAACAGTTGGAGCAGTAT
CATAACCAAGCAATGATGAACGAACTCAAAGTCGAACTACCGTTTAACGA
TGCAACTTCACCCACACCTAGCGGCACCGCAGCCACGTCACCCACACACG
ACGCTTCGAAGCAACCCAGCAACAACTCAAGGGCACCCAAATGCACGCGG
TGCCGTAACCACGGAGTTATCAGTGATCTGAGAGGACATAAACACAAATG
CTATTGGAGGGATTGCTCATGTACCAAATGTCTCATTAGCTCTGATCGTC
AGAGAGCCACAGCCGATCGCATCGCACTTTTCCGACAACAGGTACGACAA
ATTTCGGCCGAAGACCGACATCACCGCCGAGAAAAACGAAAATACAGCAA
TTTAGACGAAGATGTCAGTTATCTTACATCCATGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071068-exon-scaffold_58-1575043694:1480573..1481489 | TCONS_00071068-exon-scaffold_58-1575043694:1480573..1481489 | Clytia hemisphaerica | exon |
| TCONS_00071068-exon-scaffold_58-1575043694:1479383..1480109 | TCONS_00071068-exon-scaffold_58-1575043694:1479383..1480109 | Clytia hemisphaerica | exon |
| TCONS_00071068-exon-scaffold_58-1510915933:1480573..1481489 | TCONS_00071068-exon-scaffold_58-1510915933:1480573..1481489 | Clytia hemisphaerica | exon |
| TCONS_00071068-exon-scaffold_58-1510915933:1479383..1480109 | TCONS_00071068-exon-scaffold_58-1510915933:1479383..1480109 | Clytia hemisphaerica | exon |
| TCONS_00071068-exon-scaffold_58-1491911889:1480573..1481489 | TCONS_00071068-exon-scaffold_58-1491911889:1480573..1481489 | Clytia hemisphaerica | exon |
| TCONS_00071068-exon-scaffold_58-1491911889:1479383..1480109 | TCONS_00071068-exon-scaffold_58-1491911889:1479383..1480109 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1479383..1481489 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001275 | DM_DNA-bd |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00071068 vs. Swiss-Prot (Human)
Match: DMRTA (Doublesex- and mab-3-related transcription factor A1 OS=Homo sapiens GN=DMRTA1 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.919e-17 Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query: 659 RAPKCTRCRNHGVISDLRGHKHKCYWRDCSCTKCLISSDRQRATADRIALFRQQVRQISAEDRHHRR 859
R PKC RCRNHGV+S L+GHK C WRDC+C KC + ++RQR A ++AL RQQ ++ S E R +R
Sbjct: 93 RTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEES-EARGLQR 158
The following BLAST results are available for this feature:
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