TCONS_00071175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071175
Unique NameTCONS_00071175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071175 ID=TCONS_00071175|Name=TCONS_00071175|organism=Clytia hemisphaerica|type=transcript|length=1803bp
TGAAGCCAGACTTCAATTGCTTAatccgttgaaaagatattcaattttgc
atgaaaataataaaacaagatctctataaaatataaaatctcATTTTAGT
GACAAAAATGGAAAACGCaataaataatttaataaaacatGTCACTTCAG
GACAATTGGTCCCTTTAAACTCGCTATGGTCCCAAAACCCTGTGGTCATC
GCTTTTGTCCGTCGGTGGGGATGACAGTTGTGTAGAGCCTGGGCATCACA
GCTAGGGAATGAATTAAAACCTAAGCTAGATGCCCATGGCGTTGGTCTCG
TCTTGATCGGCGTGGAAGAACTTGGTATACAAGATTTTCTGGCTGGCAAA
TACTTCGTAGATGATGCTAAAATTTACATCGATCAAGAATTGAAGACCTA
TAAAGCCCTTGGATTTGGAAGATGTGGCTATCTGAAGCTACCTGGACAAC
TCATATCCAAGGATTTTAAAGATAGTGCTGCCAAGGCGAACAGCATGAAT
ATCAAAGGTGACTTAAAAGGTGATGGAATGCAATACGGTGGCACGTATGT
TGTTAATAAAGATGGAAAAGTACTTTTTGAACACAAACAACAGCGTTTCT
CTGACCATCCAACTTTTAATGAGATTCTCAATTCCCTTGGAATCAAATCA
GATACTGAAGATCAACCAAAGAAACCTGAACCAGTATGCGATGAAAATGC
TTGCCGTTTGTAAATTCCTGGTTGTCTTCTGACAATAcaaatagctgatt
ggttgtaagctctagtttagacggcccactttttgccctgcctattctat
ttgtgaattaaagtgggcagaAAGTCTGCTGCTAAAGTCAATGCTTTGCC
CAATAACAATTAGATAGGCAGgacagaaagtcggccgtctaaagtAGAgc
taagtgacgtaaaatcattTTGCGACCAATCAACTGTTGGGCCCGCTGGA
AGACATTGAAATGTGCATGTCATATTTATCATAGCAACGGtttaataaaa
attgaaaaattatgacGATAACAACAAATTTGCAGGAATAATAGGTTTTG
AGGGTATGTGAAAAGATGACTAGAAGGTTTGTTATTGTaaggaatatctt
tttaactaGAAAATTCCCAGTTATCCTTATGAAATCATCCTCTATCTTAC
TTTCATTTTGCACTAAATGTTTCACATAAATTCACAACCAGCCTTTTTAG
GggagttttttaattttattgaatTAATTTGATCGATTGAAATATTGTAA
ATAATATAATGAAATATAGAAATTGTATAATTGCGATAGGTCTAGCAGAG
GTAAATGGAtattttttaggttacagtagtcactagaatttttctcaatt
ttcacCCACTTTGTTGTATGACGTTTATTTAGGCcaatctaaattttttt
agaaactttttaaactgataaatttataatttttaacaaaggaaaatttg
tgAAGAACAATAGTTTTCACTTTATACGAAAATATTTATTGAGACAAgaa
tttttttggcgtgataaTTATTTACAATAAACGGGCTTCGAATAGATTGT
Atcggaatttttgatttttctaaaaaagcgatgcattgtgggattgtttc
ggctgtgttacaatagaaatctcttaggaattccttgatggaattctatt
gtaatactcccgaaacaatcccacaatgcatcgttttttagaaaaatcaa
aaactccgataagatctattcttcgaaaaatatcaagtaaactcTGAGGT
TGATAATAAACTGCACAAACCCGAGTGAAGGGGTggacactcaaggtaaa
tga
Run BLAST on NCBI

transcript from alignment at scaffold_6:214136..218800-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071175 ID=TCONS_00071175|Name=TCONS_00071175|organism=Clytia hemisphaerica|type=transcript|length=4665bp|location=Sequence derived from alignment at scaffold_6:214136..218800- (Clytia hemisphaerica)
TGAAGCCAGACTTCAATTGCTTAATCCGTTGAAAAGATATTCAATTTTGC
ATGAAAATAATAAAACAAGATCTCTATAAAATATAAAATCTCATTTTAGT
GACAAAAATGGAAAACGCAATAAATAATTTAATAAAACATGTCACTTCAG
GACAATTGGTCCCTTTAAACTCGCTATGGTCCCAAAACCCTGTGGTCATC
GCTTTTGTCCGTCGGTGGGGATGACAGTTGTGTAGAGCCTGGGCATCACA
GCTAGGGAATGAATTAAAACCTAAGCTAGATGCCCATGGCGTTGGTCTCG
TCTTGATCGGCGTGGAAGAACTTGGTATACAAGATTTTCTGGCTGGCAAA
TACTTCGTAGATGATGCTAGTAAGTATACAAGTTTTAAATACAGTCGAAA
AAAATGTTTATCGAGAACTTTTGAATATCTAGGCCTCCATTAAATTGTAG
GGCTATCAACCTCTTAACACACCAGTCTACTTGCCCTAGTATTTGTTGAA
AACTCAAGGTAGCGGGACTTAAAGAAATATGAATCTCATTCAATGGGGTT
CAAAATGTTTGAAACTCGTGTTAACCCTTCAACGATATAATCCTACCTGA
ATGTGAAAGTCTTAGAATCTTATAGCCCATAGAGGTTTGCGTGAATGCGT
GAATGGGCTTTTTCACTTGCGTGAATGCGTGAAAATTTACAAAAAATTGC
GTGAATGCGTGAATTTGGGAGAAAAAAAATTGCGTGATTGTGTGGGGCCT
CTTATAGTAGATGAGGGGTGTGTTCAGTTGAATGGAAAGTGGGTCATTCA
AGGGAAGATTGTGACTGGTGGTGCAGCTAAATTGTCACCGAGACAGGAGT
ATTTTTAAAGATTCAGTCAGTCCTATAAAATTTGTGAATATTTTCTAATA
GAAATTTACATCGATCAAGAATTGAAGACCTATAAAGCCCTTGGATTTGG
AAGGTTTGTTGTCATTTTTAATTTAAGTTATTTTTTATGAAGAAGGTTGT
GTAATTATCAAGAACGCACTACTTGGTTAGTGAGGTTATTAGTGATGATT
CAAGTGTCTAATGAAAAAAACGATTATAATGAAAAACTTATCCGCCTTCT
TCTCCTTTAGATCTTTGAGACAAATTTTCGATGATGCGAATGACTTTGCT
TAGATTCTCCTATTTTGAATGGTTTTGAATGATTATACCCTTTTCTTTCA
GATGTGGCTATCTGAAGCTACCTGGACAACTCATATCCAAGGATTTTAAA
GATAGTGCTGCCAAGGTATGCCTTTTTATAATAAAGCTTTACAGGTTTGC
AGGCCACTGTGAAGACAGATGGGTCTCTATAAACCGCTCGTATTTTTTTA
CAATGATCTTTTTTTCTCGGACTTTCCACTTCGTGTTGTCTCTTATTTAT
AAGATTTATAAGGCATTGTTAACTGAAAAGACGAGAAAACTCCTATTCGC
CTAGATGGGAGAATTTTGACAAAAGCTCCTCCAATTCGTTGAGAATAAGA
CCATTGTTAACCATTTAATTAGATTGAACTGATTTCTCTTTTTAACCTCG
TGAATAACTCGAACAAGATTTCTCGTCCTTTCAGTTTTAATAGTGCCTTA
TAAACGTTACTCCATAATTCGAAATTTTCTTAACTCGAAAAGGTTTGCGC
TCCCCTTGCCGGTTCGAGTTATGGAGACTGTTCTAGGGTTGGAGAGTCTC
ACGAGGTTAAAAAGAGAAGTTAGTTCAAGCTTATTAAATGGTTAACAATG
GTCTTATTCTCAACGAACTGGAGCTTTTGTCAAAATTCTCCCATCTAGGC
GAGGAGAGCTACAAAGTTTTTTCTAACGCAAATTATTAAGGAGACATTCG
AATTATCGAGGTTCGAGTTGAAGCAATTTGCGTTAGATAAAGCTTTGTAG
CTCTCGTCGCTTATGACCTTTCCTTTCCTTTCGTTTCACCAGGCGAACAG
CATGAATATCAAAGGTGACTTAAAAGGTGATGGAATGCAATACGGTGGCA
CGTATGTTGTTAATAAAGATGGAAAAGTACTTTTTGAACACAAACAACAG
CGTTTCTCTGACCATCCAACTTTTAATGAGATTCTCAATTCCCTTGGAAT
CAAATCAGGTTTGTTTTCTTAGATTTATTTAGACCATGTTCACGCGTAAC
GGTTCCAGGCCGAAACGAAAGGAAGTCATTCTATTCGTTAGGAGAAGTCA
TTCTATTCGTTAGGAGTGACGTAAAACTTTAAATTGACCAATAGTATGGC
TTCACTGTAACGTGCTAAAGCACTGGGCTCAACTTCAGTATACGTGAGGC
CCAATCGTAAATACTTTTTTTAAAAGGGCAATGGGTACTAGGGATAAGAG
AAGGCCAATTGTAAACCCGTGGTGAATGGTGATTGGAATAAGAGAAGGCT
AAGTCGTAAACCCTAGGGAAGGCTTAAAATTGTAAACCAAAAGTGATGGT
TACTCGGAATAAGGCAGGGCTAGATTGTAAACTTGATAAGCCTACGTGGC
GATCGTTCACAGGAAAGGGAAGGCTCGACTGTAAACCCAGATGGATACTT
AGCAGGATTAGAGAAGGCTCAGTCGTAGGCAATTTTAGGAATAAACCAAA
GTCGGAATGAAATATCTAAATTGCAAAAATTCAAGTAGAAAATTTTAAGG
CATTGACACTTGAAAAGTTAAAAAAATGATATATTTGACGTCAATAAATT
CATTTTTACGTCAATGAATGTAAAAAAAAAATTTAAAAATATTTTTTGAC
GTCAATTATTTTGACTTTTATGACGTTAAATAAGCGCAAAATCCGGGTAA
AATGGGAATAACTCGCGAAAAAATGAAAAAACTACCCCTAAGTTTTAACA
TAAGGAGGGCGTGTGCCAAATTTTAGCTTCGTAAACCAATTATTCCGCTC
TCTACGCTGCCCCAAAGTTTGTGGACGAACTCACAAACATTCTGAGATTC
TAGCTCAACTGAAGTTGAGAATTACGTTTCAGAGTAAAACTTTAAATTGA
CCAATAGTATGGCTTCACATTACGTTTCAGAGCAAAACAAGCTGCCAAAG
CATTAAAGAAGCTCGGGATATTTCCGACTATCGATTTTCCCACGATTTTG
AAAAAAATTAGATATGTCCGACCATCAAAAGATATTTCCGCCCATCCTAT
GATATTACTGACCATTACGCGAGGGTATTTCCGACCATCAAAGATATTTC
CAAAAATACGTGGCACCGTAGCCTGTGGACCTGGTCTAACAATCTTTTTA
CATGTTTGCGAGCATCGAGATCCATATTGTTTATTTTCCGACTCCCTTCC
CTTACTGTAAACAGGATTGTGGGTTCGGATGTTGCCTCTCGTCTTGATAC
TCAGCAACTCAAGAGACGGTTCAAGGGGAAGTGGAGAAATCCAGGGAAAG
GAGTGGCGCCCCCTCATCTTTGGGTAGGAAGCCAAGGAGAAGGGAGCCAT
CTAGCCGCCCTCGCTTAAACTTACTCACTGCTACCTTCATACTTTTCTTT
CCAAATATTTCAGATACTGAAGATCAACCAAAGAAACCTGAACCAGTATG
CGATGAAAATGCTTGCCGTTTGTAAATTCCTGGTTGTCTTCTGACAATAC
AAATAGCTGATTGGTTGTAAGCTCTAGTTTAGACGGCCCACTTTTTGCCC
TGCCTATTCTATTTGTGAATTAAAGTGGGCAGAAAGTCTGCTGCTAAAGT
CAATGCTTTGCCCAATAACAATTAGATAGGCAGGACAGAAAGTCGGCCGT
CTAAAGTAGAGCTAAGTGACGTAAAATCATTTTGCGACCAATCAACTGTT
GGGCCCGCTGGAAGACATTGAAATGTGCATGTCATATTTATCATAGCAAC
GGTTTAATAAAAATTGAAAAATTATGACGATAACAACAAATTTGCAGGAA
TAATAGGTTTTGAGGGTATGTGAAAAGATGACTAGAAGGTTTGTTATTGT
AAGGAATATCTTTTTAACTAGAAAATTCCCAGTTATCCTTATGAAATCAT
CCTCTATCTTACTTTCATTTTGCACTAAATGTTTCACATAAATTCACAAC
CAGCCTTTTTAGGGGAGTTTTTTAATTTTATTGAATTAATTTGATCGATT
GAAATATTGTAAATAATATAATGAAATATAGAAATTGTATAATTGCGATA
GGTCTAGCAGAGGTAAATGGATATTTTTTAGGTTACAGTAGTCACTAGAA
TTTTTCTCAATTTTCACCCACTTTGTTGTATGACGTTTATTTAGGCCAAT
CTAAATTTTTTTAGAAACTTTTTAAACTGATAAATTTATAATTTTTAACA
AAGGAAAATTTGTGAAGAACAATAGTTTTCACTTTATACGAAAATATTTA
TTGAGACAAGAATTTTTTTGGCGTGATAATTATTTACAATAAACGGGCTT
CGAATAGATTGTATCGGAATTTTTGATTTTTCTAAAAAAGCGATGCATTG
TGGGATTGTTTCGGCTGTGTTACAATAGAAATCTCTTAGGAATTCCTTGA
TGGAATTCTATTGTAATACTCCCGAAACAATCCCACAATGCATCGTTTTT
TAGAAAAATCAAAAACTCCGATAAGATCTATTCTTCGAAAAATATCAAGT
AAACTCTGAGGTTGATAATAAACTGCACAAACCCGAGTGAAGGGGTGGAC
ACTCAAGGTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044236XLOC_044236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071175-exon-scaffold_6-1575043694:218432..218800TCONS_00071175-exon-scaffold_6-1575043694:218432..218800Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1575043694:217848..217899TCONS_00071175-exon-scaffold_6-1575043694:217848..217899Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1575043694:217536..217599TCONS_00071175-exon-scaffold_6-1575043694:217536..217599Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1575043694:216693..216858TCONS_00071175-exon-scaffold_6-1575043694:216693..216858Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1575043694:214136..215287TCONS_00071175-exon-scaffold_6-1575043694:214136..215287Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1510915933:218432..218800TCONS_00071175-exon-scaffold_6-1510915933:218432..218800Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1510915933:217848..217899TCONS_00071175-exon-scaffold_6-1510915933:217848..217899Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1510915933:217536..217599TCONS_00071175-exon-scaffold_6-1510915933:217536..217599Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1510915933:216693..216858TCONS_00071175-exon-scaffold_6-1510915933:216693..216858Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1510915933:214136..215287TCONS_00071175-exon-scaffold_6-1510915933:214136..215287Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1491911889:218432..218800TCONS_00071175-exon-scaffold_6-1491911889:218432..218800Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1491911889:217848..217899TCONS_00071175-exon-scaffold_6-1491911889:217848..217899Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1491911889:217536..217599TCONS_00071175-exon-scaffold_6-1491911889:217536..217599Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1491911889:216693..216858TCONS_00071175-exon-scaffold_6-1491911889:216693..216858Clytia hemisphaericaexon
TCONS_00071175-exon-scaffold_6-1491911889:214136..215287TCONS_00071175-exon-scaffold_6-1491911889:214136..215287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:214136..218800 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
126.803	131.167	105.442	104.461	151.72	122.149	34.3437	40.5488	28.8647	28.6566	25.7607	20.3879	26.5157	23.2109	31.5403	34.0036	108.44	122.533	16.5105	12.42	109.043	97.4185	79.3205	76.5699	58.4905	65.4892	98.4022	61.4369	173.138	118.126
Blast
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BLAST of TCONS_00071175 vs. Swiss-Prot (Human)
Match: PGFS (Prostamide/prostaglandin F synthase OS=Homo sapiens GN=FAM213B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.311e-32
Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = 3 
Query:  129 LIKHVTSGQLVPLNSLWSQNPVVIAFVRRWG*QLCRAWASQLGNELKPKLDAHGVGLVLIGVEELGIQDFLAGKYFVDDAKIYIDQELKTYKALGFGRCGYLKLPGQLISKDFKDSAAKANSMNIKGDLKGDGMQYGGTYVVNKDG-KVLFEHKQQRFSDHPTFNEILNSLGIKSDTEDQPKKPEPVCDEN 698
            ++KH  +G+ V L SLW ++  V+A +RR+G  +CR W +Q  + L   LD HGV LV +G E LG+Q+FL G YF    ++Y+D+  + YK LGF R   L +    + K  +D AAKA ++ I+G+L GD +Q GG  VV+K G KVL    Q+   D+     IL  LGI ++         P CD  
Sbjct:   13 ILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCR-WIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFA--GELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVLGISAEV---CASDPPQCDRE 197
The following BLAST results are available for this feature:
BLAST of TCONS_00071175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGFS8.311e-3239.27Prostamide/prostaglandin F synthase OS=Homo sapien... [more]
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