TCONS_00071241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071241
Unique NameTCONS_00071241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071241 ID=TCONS_00071241|Name=TCONS_00071241|organism=Clytia hemisphaerica|type=transcript|length=633bp
ACAACAGCCATCACCTTTCATCAACCACAATACAGTATTATCATCTCCAC
ACACACCAGCTTCAAATGTACCAAACAATGCCTCTCCTGCACCATCTCCT
TTTCAAGACGACAACAACTACATCGACAATCTCAGCCCTTCGTGGCCTAA
CACTCCACTCTCTCCTGTAAGTTGTATATCTCTTCCTACTCCTATTGAAT
TATTGTAAAATGTATGATAAATGTACATGGTGTCAAGCCCCGTAGAAACC
TGAAGGCCACCTAGGTGGGGTTAGGTGCTTGAATTTCGCAATTCCTTGGG
GTTATCTTGTTCATTTGGGGTACCAAGCTGTACCTAGCTGTACTTtccaa
attaaaaatatttcaaattgttgACTTTTTACCCCAGCATCTAGTTCCCC
AATTTTAATTGTCTTTTATTTCGTTTCCCATTACGTCATCTTTTGGTATC
CTTTAaatgtgattgttttgatttacagttACCACCATTATAGCATGAAT
TGTAGTGAAATTGATCGGCTGAATGGGGTACCTAAATCATGCCATTTCTC
AAGGAGACCTAAAACGTTGGGCACCTTACTTCAATAAAGAGACACCTAAA
AAGTTGGTTGAAACCATGCGCACTCGTACTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_60:374307..374939+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071241 ID=TCONS_00071241|Name=TCONS_00071241|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at scaffold_60:374307..374939+ (Clytia hemisphaerica)
ACAACAGCCATCACCTTTCATCAACCACAATACAGTATTATCATCTCCAC
ACACACCAGCTTCAAATGTACCAAACAATGCCTCTCCTGCACCATCTCCT
TTTCAAGACGACAACAACTACATCGACAATCTCAGCCCTTCGTGGCCTAA
CACTCCACTCTCTCCTGTAAGTTGTATATCTCTTCCTACTCCTATTGAAT
TATTGTAAAATGTATGATAAATGTACATGGTGTCAAGCCCCGTAGAAACC
TGAAGGCCACCTAGGTGGGGTTAGGTGCTTGAATTTCGCAATTCCTTGGG
GTTATCTTGTTCATTTGGGGTACCAAGCTGTACCTAGCTGTACTTtccaa
attaaaaatatttcaaattgttgACTTTTTACCCCAGCATCTAGTTCCCC
AATTTTAATTGTCTTTTATTTCGTTTCCCATTACGTCATCTTTTGGTATC
CTTTAaatgtgattgttttgatttacagttACCACCATTATAGCATGAAT
TGTAGTGAAATTGATCGGCTGAATGGGGTACCTAAATCATGCCATTTCTC
AAGGAGACCTAAAACGTTGGGCACCTTACTTCAATAAAGAGACACCTAAA
AAGTTGGTTGAAACCATGCGCACTCGTACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044281XLOC_044281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071241-exon-scaffold_60-1491911889:374307..374939TCONS_00071241-exon-scaffold_60-1491911889:374307..374939Clytia hemisphaericaexon
TCONS_00071241-exon-scaffold_60-1510915933:374307..374939TCONS_00071241-exon-scaffold_60-1510915933:374307..374939Clytia hemisphaericaexon
TCONS_00071241-exon-scaffold_60-1575043694:374307..374939TCONS_00071241-exon-scaffold_60-1575043694:374307..374939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:374307..374939 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100674	0	0.674143	1.0794	0	0.178665	0.107576	0.404822	0.0864241	0	0.300502	0.396579	0	0	0	0.123339	0.145525	0	0	0	0	0.149165	0	0	0	0.160355	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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