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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071379 ID=TCONS_00071379|Name=TCONS_00071379|organism=Clytia hemisphaerica|type=transcript|length=1419bp
ATGGTTAACTTATATTTTGTTAAAAGACTTCGTATATTATCCAAGAAAta
acattaacattaaaaatgcgaaaaaataattttaccaaataaaaaaaaag
gaaaatgaaaaaagtgtgAATATTATaagttttaaaactatttacaAGTA
GCGAGTATAGTGTTGATTATTTGCAAAGTTTAACAAAACAGCCGAGGCTA
GAATGTAGGTCAAAGGCTGGATAATAAAATCAGTTTTAAAGCTAACTGTT
TAAAAGGATGTGTATAATCAAACAAAAGAAGAGGACGAGTTTTGATTGAT
GAATAAGACAAAATGTCTACGTATTTTCCCTTTTAAGGTAATATTAGAAT
TCAAGAGAGAGAGGTTGCCTAGTAATAAACTTGGACTATTATGCAACAGT
CATTAgtcaaatctgaaaaaaataataccgTAATCAAAATCTAATGTCTT
CCTGTCCCATGTTATAATTCCCCTTGGTTATCATATTCATTGTATTTAAT
CCAATCGAGCGCAATCGGTGCGGAAATCATACTATCCGTCAAGCCGAAAG
CTTCGCACAAATCTAAAGATTTTGGTGCAATGTTTCTACAAAGTTCATCG
GAGAGGTCTTCAATCTCTTTTCCTTGCTCAATGGTCAAGATACCGTTGGT
TAAATACCAAGCTAAATTACGTTTCACCACACTGACAACATACAAAGTAT
GCAATTCACTGAGGATTTCTTTCAGCGTTGGATCTGCAGTATTGATAGCA
ACCAAGACGCGATCGTTGACCAAGCGTTCGCCGAATGAACGCGCGGCCAG
TTGTACTAGATCACTACATTTCAACATCCAAGTATCGTAGAGTTTTTCTT
TACCAGCTTTCATCATTCGCTTGCCAAGTATCGTAGAGTTTTTCTTTACC
AGCTTTCATCATTCGCTTGCCAAGGTTTGTAAACAAGACATCTTCACGTT
TTTGGAGTAAGTAATTCAGATACTCAGTAGAGCTGAGATCCTTATTAACA
GGGGCTTCACCAGTAGATGGTTTGAATAAGGATAACCTCTCTTTGGCAAC
TTTCTGCATCAGCACTGAGTTATCACCTTCAGCTGTGATACAAGCATGCG
AGAGGTTGATGAACACACCCAATCGGTTACATGACAAGTAGCCTTGACCA
CCAGTACGTTCTCTTGAGATGGATGCCAAGTTCTCCAGATTCCATCCACA
AAATGGTTTCATGACGCAACACATTGTGACTACCTCCTGGTGTTCCGAAC
CATCTTCTGCTTGGTTTGCCCATCGATCTTTCACATAATCCAAAGCGATA
TTCAAGCAATATGTTTCAGCTAACAAAGGCATCAATGCGTTTTGTTGGAG
TTGATAACTCAATATGGGTGTATCTGATTTACCACTTTCACCAACAGTCA
GACGTGTTGCGGAATATct Run BLAST on NCBI transcript from alignment at scaffold_60:981805..983630- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071379 ID=TCONS_00071379|Name=TCONS_00071379|organism=Clytia hemisphaerica|type=transcript|length=1826bp|location=Sequence derived from alignment at scaffold_60:981805..983630- (Clytia hemisphaerica)
ATGGTTAACTTATATTTTGTTAAAAGACTTCGTATATTATCCAAGAAATA
ACATTAACATTAAAAATGCGAAAAAATAATTTTACCAAATAAAAAAAAAG
GAAAATGAAAAAAGTGTGAATATTATAAGTTTTAAAACTATTTACAAGTA
GCGAGTATAGTGTTGATTATTTGCAAAGTTTAACAAAACAGCCGAGGCTA
GAATGTAGGTCAAAGGCTGGATAATAAAATCAGTTTTAAAGCTAACTGTT
TAAAAGGATGTGTATAATCAAACAAAAGAAGAGGACGAGTTTTGATTGAT
GAATAAGACAAAATGTCTACGTATTTTCCCTTTTAAGGTAATATTAGAAT
TCAAGAGAGAGAGGTTGCCTAGTAATAAACTTGGACTATTATGCAACAGT
CATTAGTCAAATCTGAAAAAAATAATACCGTAATCAAAATCTAATGTCTT
CCTGTCCCATGTTATAATTCCCCTTGGTTATCATATTCATTGTATTTAAT
CCAATCGAGCGCAATCGGTGCGGAAATCATACTATCCGTCAAGCCGAAAG
CTTCGCACAAATCTAAAGATTTTGGTGCAATGTTTCTACAAAGTTCATCG
GAGAGGTCTTCAATCTCTTTTCCTTGCTCAATGGTCAAGATACCGTTGGT
TAAATACCAAGCTAAATTACGTTTCACCACACTGACAACATACAAAGTAT
GCAATTCACTGAGGATTTCTTTCAGCGTTGGATCTGCAGTATTGATAGCA
ACCAAGACGCGATCGTTGACCAAGCGTTCGCCGAATGAACGCGCGGCCAG
TTGTACTAGATCACTACATTTCAACATCCAAGTATCGTAGAGTTTTTCTT
TACCAGCTTTCATCATTCGCTTGCCAAGGTTTGTAAACAAGACATCTTCA
CGTTTTTGAAGTAAGTAATTCAGATACTCAGTAGAGCTGAGATCCTTATT
AACAGGGGCTTCACCAGTAGATGGTNAAATCATACTATCCGTCAAGCCGA
AAGCTTCGCACAAATCTAAAGATTTTGGTGCAATGTTTCTACAAAGTTCA
TCGGAGAGGTCTTCAATCTCTTTTCCTTGCTCAATGGTCAAGATACCGTT
GGTTAAATACCAAGCTAAATTACGTTTCACCACACTGACAACATACAAAG
TATGCAATTCACTGAGGATTTCTTTCAGCGTTGGATCTGCAGTATTGATA
GCAACCAAGACGCGATCGTTGACCAAGCGTTCGCCGAATGAACGCGCGGC
CAGTTGTACTAGATCACTACATTTCAACATCCAAGTATCGTAGAGTTTTT
CTTTACCAGCTTTCATCATTCGCTTGCCAAGGTTTGTAAACAAGACATCT
TCACGTTTTTGGAGTAAGTAATTCAGATACTCAGTAGAGCTGAGATCCTT
ATTAACAGGGGCTTCACCAGTAGATGGTTTGAATAAGGATAACCTCTCTT
TGGCAACTTTCTGCATCAGCACTGAGTTATCACCTTCAGCTGTGATACAA
GCATGCGAGAGGTTGATGAACACACCCAATCGGTTACATGACAAGTAGCC
TTGACCACCAGTACGTTCTCTTGAGATGGATGCCAAGTTCTCCAGATTCC
ATCCACAAAATGGTTTCATGACGCAACACATTGTGACTACCTCCTGGTGT
TCCGAACCATCTTCTGCTTGGTTTGCCCATCGATCTTTCACATAATCCAA
AGCGATATTCAAGCAATATGTTTCAGCTAACAAAGGCATCAATGCGTTTT
GTTGGAGTTGATAACTCAATATGGGTGTATCTGATTTACCACTTTCACCA
ACAGTCAGACGTGTTGCGGAATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071379-exon-scaffold_60-1575043694:982753..983630 | TCONS_00071379-exon-scaffold_60-1575043694:982753..983630 | Clytia hemisphaerica | exon |
| TCONS_00071379-exon-scaffold_60-1575043694:981805..982345 | TCONS_00071379-exon-scaffold_60-1575043694:981805..982345 | Clytia hemisphaerica | exon |
| TCONS_00071379-exon-scaffold_60-1510915933:982753..983630 | TCONS_00071379-exon-scaffold_60-1510915933:982753..983630 | Clytia hemisphaerica | exon |
| TCONS_00071379-exon-scaffold_60-1510915933:981805..982345 | TCONS_00071379-exon-scaffold_60-1510915933:981805..982345 | Clytia hemisphaerica | exon |
| TCONS_00071379-exon-scaffold_60-1491911889:982753..983630 | TCONS_00071379-exon-scaffold_60-1491911889:982753..983630 | Clytia hemisphaerica | exon |
| TCONS_00071379-exon-scaffold_60-1491911889:981805..982345 | TCONS_00071379-exon-scaffold_60-1491911889:981805..982345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:981805..983630 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009075 | AcylCo_DH/oxidase_C |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
BLAST of TCONS_00071379 vs. Swiss-Prot (Human)
Match: ACOX3 (Peroxisomal acyl-coenzyme A oxidase 3 OS=Homo sapiens GN=ACOX3 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 5.491e-17 Identity = 56/166 (33.73%), Postives = 82/166 (49.40%), Query Frame = -1
Query: 964 RYSATRLTVGESGKSDTPILSYQLQQNALMPLLAETYCLN-----IALDYVK--------DRWANQAEDGSEHQEVVTMCCVMKPFCGWNLENLASISRERTGGQGYLSCNRLGVFINLSHACITAEGDNSVLMQKVAKERLSLFKPSTGE-APVNKDLSSTEYLN 1419
R+SATR G + + + P+L Y +QQ L+P LA Y L+ + LD V+ DR A QAE G +E+ + KP W + RE GG GYL+ NRLGV + + T EGDN++L+Q+ + L L + A L S ++L+
Sbjct: 328 RFSATRRQFGPTEEEEIPVLEYPMQQWRLLPYLAAVYALDHFSKSLFLDLVELQRGLASGDRSARQAELG---REIHALASASKPLASWTTQQGIQECREACGGHGYLAMNRLGVLRDDNDPNCTYEGDNNILLQQTSNYLLGLLAHQVHDGACFRSPLKSVDFLD 490
The following BLAST results are available for this feature:
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