|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=transcript|length=1343bpRun BLAST on NCBI protein sequence of TCONS_00071294-protein >TCONS_00071294-protein ID=TCONS_00071294-protein|Name=TCONS_00071294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp MSLKTLPVLFLNLGGEMMYILDQRLNAQNIPPGKAKKVMHDILATMLNKRRun BLAST on NCBI transcript from alignment at scaffold_60:1165311..1175332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=transcript|length=10022bp|location=Sequence derived from alignment at scaffold_60:1165311..1175332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1165311..1175332+ >TCONS_00071294 ID=TCONS_00071294|Name=TCONS_00071294|organism=Clytia hemisphaerica|type=CDS|length=14781bp|location=Sequence derived from alignment at scaffold_60:1165311..1175332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071294 vs. Swiss-Prot (Human)
Match: OSCP1 (Protein OSCP1 OS=Homo sapiens GN=OSCP1 PE=1 SV=4) HSP 1 Score: 351.288 bits (900), Expect = 8.881e-117 Identity = 191/373 (51.21%), Postives = 250/373 (67.02%), Query Frame = 1
Query: 49 MSLKTLPVLFLNLGGEMMYILDQRLNAQNIPPGKAKK----------VMHDILATMLNKRFMEELFKPQDAYSRKAMRTVFDRLAHASIMRLNSASMDKLYDLMTMALKYQVSLSKQPQDVLMVTLNHMDTIREYSRGNSQILEQVDYVYSLINEAYSTMTPGEFQLIRQTLLNFFQDMHIRVSIFLKDKVQTPNGRFILPKGGKVPWGSETPGVIRFYNDQGEQANLSSFFVEGKYQLPDKPGSFEILGDRGTRLGVNMYTMARPXXXXXXXXXXXXXKPSIQSTKSEADDVNNTESAKXXXXXXXXXXXXXXKDS---KDFRLNLFDSD-AQEQVAEKQYAKVRHREVVVDATQRSQRS-EITQLMNEFSI 1122
MS++TLP+LFLNLGGEM+YILDQRL AQNIP KA+K V++DI++TM N++FMEELFKPQ+ YS+KA+RTV++RLAHASIM+LN ASMDKLYDLMTMA KYQV L +P+DVL+VT NH+DTI+ + R + IL+QVD + E Y ++ GEFQLIRQTLL FFQD+HIRVS+FLKDKVQ NGRF+LP G VPWG+E PG+IR +N++GE+ F G Y K GSFE+ GDR +LG NMY++ +PVET +S + ++ S E+ N + K S FRLNLF +D +EQ A + ++ + + + ATQ QRS E+ ++M EF I
Sbjct: 1 MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSK-----NLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEI 368 The following BLAST results are available for this feature:
BLAST of TCONS_00071294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.