|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071306 ID=TCONS_00071306|Name=TCONS_00071306|organism=Clytia hemisphaerica|type=transcript|length=3026bpRun BLAST on NCBI protein sequence of TCONS_00071306-protein >TCONS_00071306-protein ID=TCONS_00071306-protein|Name=TCONS_00071306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=923bp MSSIRGFSYGRRRGSTEISQVGLANYPNESDDSLQGIPSKKSNQESGLLLRun BLAST on NCBI transcript from alignment at scaffold_60:1431869..1452943+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071306 ID=TCONS_00071306|Name=TCONS_00071306|organism=Clytia hemisphaerica|type=transcript|length=21075bp|location=Sequence derived from alignment at scaffold_60:1431869..1452943+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_60:1431869..1452943+ >TCONS_00071306 ID=TCONS_00071306|Name=TCONS_00071306|organism=Clytia hemisphaerica|type=CDS|length=36036bp|location=Sequence derived from alignment at scaffold_60:1431869..1452943+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071306 vs. Swiss-Prot (Human)
Match: HEAT4 (HEAT repeat-containing protein 4 OS=Homo sapiens GN=HEATR4 PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 2.163e-52 Identity = 144/525 (27.43%), Postives = 257/525 (48.95%), Query Frame = 2
Query: 998 KFESRIQQTYPLTPETWSKNIEIKASMQNKNQKGIRKWTDYPQEIKEEVLKLSK--LSIKNLVVDKPP---SQNIELKIATRQRNNNNLLIAVDEWRTKWLLEKKWQSKTILQLRDGMKNINDHVRLAAVSASGKVILDRKERFRRKEDMMPEESNWPEVESEIINEIKLLLEDKSNVVGLAASIALYSVNQVDTKATRLLLNTVQNGAPSERWIACQCLAEYNIHDDCIIVEMLNIVQNGADPVKTKRIEAFLRKLSNLTDTIQYMLSERLNSTSWNDRIMACQLFPVLSGPLKKDVANKLSYIAWHDWNKEVRMAAATTLGRTGNGKLIHDALCKYLKSPKTSQQIEALRKISNLGIVTAQLMVPFLLCLKSQHGTVALEAMRVIRLNWLCTDEIVNTLSMLITSDRNLKVKLNAIKTLGVIGEKNNLMIREILLWCIRFEKDRMLRQASCQAIGKIKYSDKEVINTMQDMLVVEDNKHFRSLISNTLNSLGYEDTCDESMISAVQERVKELCQKDNVLLKIL 2557
++ ++ + +P TPE WS +AS + +G +WT P K+ +L++ + + IK + K +++ ++ +R + EW+T W L +W +T+ L + +++D VR+ A++ L+R + D + PEV ++ ++ L DK+ V +AA+I Y++ + A ++ + G + W A QCLA +I +L+ + + ++ L LS T I ML+ LNS W +RI+ACQ F +SG + D+ +KL + W+DWNKEVR AAA LG+ GK +HD + L + +++EAL I L ++TA+L+ FL C V A + ++ L L+ D K+K AI+ LG IG+ + + ++LLW I +E+ +R +C++I +K V +T D+L++E++ + T+ L + ++ M+ ++ R+K L QKD + KIL
Sbjct: 379 RYNKQLSKVFPETPEKWSAQAIPEASY--RPVQGALRWTALPTPAKDMLLQVGEKDVPIKTRRLKKQAKSLQEDVTWELVVLRR-------MLKEWKTAWALIIEWHHETVENLLQSLGDLHDDVRIKAITTCATAALERPRIATSQRDSDKTIQDLPEV---LLPALEAALCDKNAHVRMAAAICQYAIQSHNPLARNIMQTALLKGNSVDSWAAAQCLALEGTATYPVIKRILHQLFTKKNEDTEEQSYILLSYLSEKTTLIHTMLAVELNSCQWKNRIVACQAFSRISGNVCLDMKHKLIQLMWNDWNKEVRRAAAQALGQMSLGKEVHDIIRVKLGQGNSQERVEALYLIGELKLMTAKLLPSFLHCFSDDFTAVRRAACLAAGALQIRDKMVLECLLNLMQRDPYWKIKAFAIRALGQIGQVSPELT-DLLLWAIHYEESPGVRLEACRSILALKLQGDRVRDTFLDVLLLENHDAVLKEMYQTMKILNLGNEGNQEMLQEIKNRIKTLSQKDLLTHKIL 890 The following BLAST results are available for this feature:
BLAST of TCONS_00071306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.