TCONS_00071313 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071313
Unique Name	TCONS_00071313
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1513

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_60:1659737..1665003+
coding sequence from alignment at scaffold_60:1659737..1665003+

transcript sequence

>TCONS_00071313 ID=TCONS_00071313|Name=TCONS_00071313|organism=Clytia hemisphaerica|type=transcript|length=1513bp
CTCTTGACATTTTATTATCCTTTTGTTCTCATGTATATAAAATATACCAA
CATGTATGGGAAAAAGAATCAGTTCGGTTTTGCAGGCCAAAATAATCCGA
CTGGCGGGACAcaaattttgtatatttttactaaaaacgatacatttatt
ttgaaattatggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGC
AATCTATTCTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGA
TGTAGCATCGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATG
AAAGATTTGATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCT
GAAGCACAACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCG
AAACCGTCGGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACAT
GGAAAGACGGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAG
CAGAAAAAGAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATG
CATCAAATTTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGG
CAATTACAACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTT
CCATTGAATATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATC
TATTGTACACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAA
GAATGGTTCGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCA
GGGCAACAATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCA
AACCTATGACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGA
GTAATGGGGAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGT
CAACTTGGTGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataa
agtTTATGGATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATA
ACCAATAAACttccttttcaaaatattgcttcGGTAATTGAGGAGTTTAT
AAAAAGTTTACCCTATTAATCAAAGCAatactttaaaggttttattttta
agtgTTCCCGTGGCATATCAGACAtaaatttcatatcaggacagtgtctg
cctatcgttatattatgctgatataagcaaaaaaatgttttctttttctc
tttctgaccaatcttgctccacatccgtgtcaatccaatgtgaaaaagct
tgtaaattaaaattgacgagtggagtaagcaaacgatatcactctttatt
taaaaacaaaacctttaataactTAACGCTTATAATAGACGTGGTactgg
tttcaaaacgaggcagtcgttgNATGTATGTTGATACTGGTTCTGCACTG
GCTCAACTAGAAGAAGTTGCCATGGACCGTCATGCTTGGAAAGACTTGGT
CATGAGGAGCAAG

Run BLAST on NCBI

protein sequence of TCONS_00071313-protein

>TCONS_00071313-protein ID=TCONS_00071313-protein|Name=TCONS_00071313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MASLILFFIGMALCNLFSGLQAVPVSQNKDDVASKNETNKNIIQFYDERF
DLSELKLAGDIMFSEAQLNDEVNDDDKKKDRNRRRRDTVGPVRPVATWKD
GVVPYVFNFGMTDEQKKKIKWAMKIIERRSCIKFQETSFTDRPKHFLAIT
TGNGCYSTVGSSNFPLNILSLKFPNCFDCSSIVHELLHALGFFHEQQRMV
RDKYVKINWKNIQPGQQYNFKKVKSLVDTDQTYDMRSLMHYKSYDFSSNG
EPTIECINADGTACQLGGKWLRYSDTKKLNKVYGCKPKRFGYSSRYNNQ

Run BLAST on NCBI

transcript from alignment at scaffold_60:1659737..1665003+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071313 ID=TCONS_00071313|Name=TCONS_00071313|organism=Clytia hemisphaerica|type=transcript|length=5267bp|location=Sequence derived from alignment at scaffold_60:1659737..1665003+ (Clytia hemisphaerica)
CTCTTGACATTTTATTATCCTTTTGTTCTCATGTATATAAAATATACCAA
CATGTATGGGAAAAAGAATCAGTTCGGTTTTGCAGGCCAAAATAATCCGA
CTGGCGGGACAcaaattttgtatatttttactaaaaacgatacatttatt
ttgaaattatggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGC
AATCTATTCTCAGGTATGGTTTCTAGGTCAGATTTACTACGAAGAGTTTC
tggaacattttttaaaatcagCCCTAGCGAATACAGGGATAATTTCCGAc
acagctggcacacaacgttgtttcaacgttcacctaacgttatattgatg
ttgtgaacgttagataaacgtcgaaacaaaGTTAAGTGCCAGCTCGGTAA
TTATCTCTTGGTTTTAGCCCTAAGCCACCCCTAACCCCCATAAATATTAC
ACTTGTAAATATTACTACCTTTCCTGTTAAAATTTGAGCTTCCTTTTTTC
TTCCTAAGTTTCCTTTAGGCTCATTCAagtcataaatcaaaaatttacaa
aatattttcatttacaGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAG
ACGATGTAGCATCGAAGAACGAAACTAACAAAAATATTATCCAGTTTTAT
GATGAAAGATTTGATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTT
TTCTGAAGCACAACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAG
ATCGAAACCGTCGGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCG
ACATGGAAAGACGGAGTGGTGCCTTATGTATTTAACTTTGGAATGAGTAA
GTATGAAACAGTTTTTGAACAATATTACAAGCTTAGCTCCAAGGATATAC
CAACACAACCATAAGACGACCATACATGGCCTTGTAAAAGTTTCATCAAA
TAGAGGCAGTAAAACGCGACCCACGTGACTGAATgacttattaaaatttt
gactttttggctacTTCAGAGAAAAGCACGCCTTTTTTCTTATAATACAA
GCCCGAGTTACAACTCTTCCTTACTCGGCTTTTTTATAAAACCGTATTTA
TAACTCGTTTACTGTAACTCGCCTTTTCTGGACGTAAGTTTCCGACGAAC
TGAGATagtttcagttaaataaatatgatagtttctttttaaatgagata
gtttcgttttaaatgagatagtttcgttttaaggGAAATAGTATCCCCTG
AATGAAacaaagtttctttttaaacgagatagtttcgttttaaatgagat
agtttcgttttaaatgagatagtttctccTGAAATGAACTTAGTATATCC
CCTGAATGAaacatagtttctttttaagggctctgaccatagtgaatttt
tcataattgccgtgtttaaaaaatgttttctgactgatgtaaccaacaaa
actatggcatgttataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTATAAacgcaattctttgttaaaagtgttaaggaacctgaaat
ataacttttatgttcaaataccaaaatcaatttttggactatggtcagag
cccttaaacgaGATAGTATCGGTTTAAATGACATAGTTTCGGTTTAAATG
atatagtttcgttttaaacaagAAAGTATTTATTGGCGCTTCCGCGCGCC
ATAGAAACCTGCTGCAACATTAATCTACTTTTTAATCCATGTTTTCCTTT
GGTGTGGTTTAGAAATTAAGACAAAGACGGAAGACAATTTTAGTTCcaat
caatcaaatttcaattttctcttATAAATAGCTGATGAGCAGAAAAAGAA
GATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAATTTC
AAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACAACC
GGCAACGGGTAAGCCCCAATATTATATACAGTGGAatctccgtaactcga
acatgcacggggaacacaaatttgttcgagataCGCAGTATTCATTTTTC
CCTTATCACTTGTCGTTGTGtttctgagacaggggtgtacaaaACAACAC
GATCCAATAAGTTTATTCAGACAATCAATattacaaaaaggaaaaaaaaa
actaacaataACTATGATTTAAGTTTTACGAAGCCAGAAGTTTGGCAACT
GACTATGGTCGGTGTAGATTGTTTAGTGTTTTGCCAAGAAAAACCATAGG
TCAACCCCCTTGTTACTGTACTCAGGAAATGCGGTATGCAGACATCCGCG
gtaaaacaatcaaaacaaataatttCATTGCCAGACAAATAGTGGGGACG
TACGTGGGTCCgggacaccgaaataccgacacatTTTTGTTTATCACCAA
AATACCGACGCAAAAAAGGTCAATACCGACACACCGATAAACTGACCCCC
CCCCAAAATATCGTTATGCTGAGCAACCCCATACTCAGTCTTTTTAAAGA
CCTCTTTCGGTTTACTGATACGCAAAGAAGGGGAATCTTTTTACGTCAAG
ACCTATCAGTAACAGTCGAAACTATCTTGGTTAAACCTGGTTTCTTACCA
TGTTCTTGGGTCCTTCTCGTTGGTCAGATGCAAAACATTCAAATATTTGG
ATCAAGTCCCCAGAAAGTTTATCAGAGCGCAGTGGTCCTAACTATCCATG
ATTCCGTTTGACAGTGAAATGgctttaatgttttttttacttctaCAAAC
ATTTTTTAGTACTTTTTACAAGGTGTTTCTACGGGGCTACACTCTGTAGC
ACAAAAGTGTATATATCAATTTGTAATTAAAAGCTTTGATAAGCTtttga
tcaaaagtttctaatgttttttaatTTCAGGTGTTATTCTACTGTCGGAT
CAAGCAACTTTCCATTGAATATTTTATCGTTGAAGTTTCCAAATTGTTTT
GATTGCTCATCTATTGTACACGAATTATTACATGCCCTTGGCTTCTTTCA
TGAACAGCAAAGAATGGTAAGAGATTTCGGGACCAAAAAATACCATTATT
CTTCTTTAAACTATTCCCTGATTTAAAATTTAACCATTTTAATCCAACTT
GATTTTGAGACGTACGGGTTtacattaatttttttcaccaAAACAAACTG
ACATAACTTAAACCTCTATCTAAAAAAGTATGGTTTgtatcattattttc
aaatttgtgcTTTTAAAACACTACGTCGTGGGACTTGCAGATATGAAATA
GAGGCATATATTCCAGTGGCACATCTCTGTACCTCTTTGCGCCAAAATCT
TCTAATAAACGTGGGAGGGGGGTTTGAAATAAGAGGGTGGgtgaaaaaaa
tctcaaacctcaataaggggggggggaataagaatgtcctgagaagaaaa
ttttcgaaaattaattagcggggagGAAGCTTATTATGTACCCAAGAGTA
GGACAAAATTGTTCATGTAAAATACAGAGTGTCTGTTACAAAAAGAAGAT
TCTTTCTATTCATCTAAAATAATCACGACACCCTTTTTACGGTTTTTAGG
TTCGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAA
CAATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTA
TGACATGAGAAGTCTAATGCACTACAAATCGTAAGTAAATCGATCAAATT
CGTTtctaaatatctttccaacaaatcACCTTTAAACCCTTGAAGCTTAG
ACGAGACTGGGTTAGAGTTCATCAGATATCTTGATGCTTtggataaagaa
aaaagtacttATTATAGCTCCGGTTGTTATTACGTGTGCAATTCCTTCTA
TAGGCTAGGTATTTAGATTTCTGCTCCGGGGTACTAGGGTTAGGGAATTT
CTAACAAAGTGAATAAACTATGGACAGACTCTATGATATCACACTCCAAA
GCTTACCACAGTGAAAACCTACTGACCAGGATAATGTGAACATTTTTACA
AAAGTATACTACTTGTAAGATTCGGATAAGCAGTCCATTTTTCACTCATC
GGGGTTCAACTCTCTCTAACTCGAACTCCTGTCATTTTAATCTCTCCGTA
ATTCGACTAAAAAATTAATCCCCTCAACTGGAAAATGGTAgaaaatactc
tctgtaattcgaaaattactctaattttaagaagattcggtcccttgaag
atcgaattagagagtatcaactatattgaaaagaaaatacaaCTGGTGAA
AAGAACTGTAAATCtgatcttcatcttcttcttttcatAGATACGATTTT
TCGAGTAATGGGGAACCAACAATTGAATGTATAAACGCAGATGGTACTGC
TTGTCAACTTGGTGGGAAATGGCTTCGATACTCTGATacaaaaaaactga
ataaagtTTATGGATGTAAACCTAAAAGATTCGGATACTCATCACGTTAT
AATAACCAATAAACttccttttcaaaatattgcttcGGTAATTGAGGAGT
TTATAAAAAGTTTACCCTATTAATCAAAGCAatactttaaaggttttatt
tttaagtgTTCCCGTGGCATATCAGACAtaaatttcatatcaggacagtg
tctgcctatcgttatattatgctgatataagcaaaaaaatgttttctttt
tctctttctgaccaatcttgctccacatccgtgtcaatccaatgtgaaaa
agcttgtaaattaaaattgacgagtggagtaagcaaacgatatcactctt
tatttaaaaacaaaacctttaataactTAACGCTTATAATAGACGTGGTa
ctggtttcaaaacgaggcagtcgttgNATGTATGTTGATACTGGTTCTGC
ACTGGCTCAACTAGAAGAAGTTGCCATGGACCGTCATGCTTGGAAAGACT
TGGTCATGAGGAGCAAG

Coding sequence (CDS) from alignment at scaffold_60:1659737..1665003+

>TCONS_00071313 ID=TCONS_00071313|Name=TCONS_00071313|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_60:1659737..1665003+ (Clytia hemisphaerica)
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA
atggcATCTTTAATTTTGTTCTTTATTGGTATGGCTTTATGCAATCTATT
CTCAGGTTTACAAGCAGTTCCAGTTTCTCAAAATAAAGACGATGTAGCAT
CGAAGAACGAAACTAACAAAAATATTATCCAGTTTTATGATGAAAGATTT
GATCTTTCGGAACTGAAGTTGGCTGGTGATATAATGTTTTCTGAAGCACA
ACTCAACGATGAAGTTAACGATGATGATAAGAAAAAAGATCGAAACCGTC
GGCGTCGTGATACTGTCGGCCCTGTTAGGCCAGTGGCGACATGGAAAGAC
GGAGTGGTGCCTTATGTATTTAACTTTGGAATGACTGATGAGCAGAAAAA
GAAGATTAAATGGGCAATGAAAATTATTGAACGAAGATCATGCATCAAAT
TTCAAGAAACAAGTTTCACGGATCGACCAAAACATTTCCTGGCAATTACA
ACCGGCAACGGGTGTTATTCTACTGTCGGATCAAGCAACTTTCCATTGAA
TATTTTATCGTTGAAGTTTCCAAATTGTTTTGATTGCTCATCTATTGTAC
ACGAATTATTACATGCCCTTGGCTTCTTTCATGAACAGCAAAGAATGGTT
CGGGACAAATACGTCAAAATTAATTGGAAGAATATTCAACCAGGGCAACA
ATACAATTTCAAGAAAGTCAAATCATTAGTAGATACAGATCAAACCTATG
ACATGAGAAGTCTAATGCACTACAAATCATACGATTTTTCGAGTAATGGG
GAACCAACAATTGAATGTATAAACGCAGATGGTACTGCTTGTCAACTTGG
TGGGAAATGGCTTCGATACTCTGATacaaaaaaactgaataaagtTTATG
GATGTAAACCTAAAAGATTCGGATACTCATCACGTTATAATAACCAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044319	XLOC_044319	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071313-protein	TCONS_00071313-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:1659737..1665003 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22457	1.24195	0.400149	0.283192	0.364959	0.0591401	0	0.0769037	0.0525088	0.237901	0	0	98.48	69.5058	26.3011	17.4079	3.97822	27.4028	0.46582	1.23493	0	0	0.908755	0.789715	0.0300659	0	0.240479	0.534919	1.37673	1.30589

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001506	Peptidase_M12A
IPR006026	Peptidase_Metallo
IPR024079	MetalloPept_cat_dom
IPR034035	Astacin-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity
GO:0008270	zinc ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008270	zinc ion binding

Blast

[Close]

BLAST of TCONS_00071313 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 8.491e-29
Identity = 67/189 (35.45%), Postives = 106/189 (56.08%), Query Frame = 3

Query:  465 VPYVFNFGMTDEQKKKIKWAMKIIERRSCIKFQETSFTDRPKHFLAITTGNGCYSTVGSSNFPLNILSLKFPNCFDCSS--IVHELLHALGFFHEQQRMVRDKYVKINWKNIQPGQQYNFKKVKSLVDTDQTYDMRSLMHYKSYDFSSNGEPTIECINADGTACQLGGKW-LRYSDTKKLNKVYGCKPK 1022
            VP++ +    +  ++ I  A+   ER +CI+F   ++ D+ + F++I    GC+S+VG S   + ++SL  P C       ++HEL+H LGF+HE  R  RD+Y+++NW  I PG + NF K +S  +    YD  S+MHY    FS  G PTI  + A   +  +G +W L  SD  ++ K+YGC P 
Sbjct:  104 VPFLLSSKYDEPSRQVILEALAEFERSTCIRF--VTYQDQ-RDFISIIPMYGCFSSVGRSGG-MQVVSLA-PTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQS-SNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAP--SVHIGQRWNLSASDITRVLKLYGCSPS 284

The following BLAST results are available for this feature:

BLAST of TCONS_00071313 vs. Swiss-Prot (Human)

BLAST of TCONS_00071313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASTL	8.491e-29	35.45	Astacin-like metalloendopeptidase OS=Homo sapiens ...	[more]

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TCONS_00071313 (transcript) - C. hemisphaerica