TCONS_00071585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071585
Unique NameTCONS_00071585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071585 ID=TCONS_00071585|Name=TCONS_00071585|organism=Clytia hemisphaerica|type=transcript|length=3014bp
aaatcaatgaaaaataCTATTGAATAAAATCTTACAATTGCATGATGGAA
CTAGGGAAAATTCTATTGGTCAGCATCGTCATTGCAACTGTTTCTATTAA
AGATTCTGTCAACTCAGAAGATGCAGCTGAAATGGAAAAATATGCAAAGA
AATACTTGACAAAATATGGATACAAATCAAACTGGTTATTGATCTATTCG
AAATACTCATATGAAAAAGATCTTCGGACGTTTCAAGCATATTTCGGACA
AAGAGTATCAGGCGTGTTAACGGAAGAAACGTACTCTTTGATGAAACAAG
AGCGTTGTGGTATGTCTGACGTTGGGTTTCGTCTTGGTAAAGAGACGGAG
CAGGAAAAGAAACATGATTTTGTATTGCAAGAACACCATACTTTGGGATT
TTAAAAGCTTTCCAAAAcattccaaacaacaaagagaaaaatacaacaaa
atcataacaaaatcttttgaaagatgGTCAAAACACACTAACCTTCGATT
CGAAAAATCTTCATTGAATCCTGATATTGTTATCAACATTACAAAAGATT
TCCATAGAGATCCTTATCCATTCACCAAGGAATTCAAAGATCTTGGCCAC
GCTTTCTACCCACTGAGTCAAAGAGGTCTTGCAGGCGATATCCATTTAAA
TCAAGATTTGGTTGAAGGGAAAGCAGATGCAGACTTTAATTGGCTTTTTA
CTCATATGATTGGTCACTCTCTTGGTATCGAGCATACAAACGATCCGACC
TCAATAATGTATCCAATcaataagaattttcaaaacgaggctgacTTTCA
AATCTCTACTGGCGATAGATTAGCTGTTCAACAGTTGTATGGAAAACCAC
CAGCATTAAAAACAACAGTAAAAACACAAAAGACTAAACCTACAACAGGG
ACGATCCAGACGAGCACAGTAAAACAATCAGTCGATAAAATAACAACAAC
ACCTCCTGCAATGAGAATTTCTACACTGACCACCCCCGCAACAACTACGA
CCTCACCCACAACAACTACGACCTCTCCGACAACAACTAAGACCACTCCA
ACAACAACTACGACAACTACGACCATCCCTAAAACAACTACGACCACTTC
gacaacaactacaacaacccCTATAACAACTACGACTATCCCCGTAACAA
CTACGACCACTCCAACAACAACTACGACCATCCCTTCTAAATCAACAATA
ACCACTCCTTCAAGGACCACTACCACACAATTAAATGTAAATCGTAAAAC
ATGTCCTGAATTCGAAGTCACAGCACTAGTATACTACCCTTTCCATAAAA
GACTATTAGTTTATCTACAAAGCGATAAAATTATGATGGTGAATTCAAAA
GGGGTATCGTACACGACTTCAAGATATGCTCTGATCGCACGTCGCGGTGA
ATACTTGAAATGTGTGGATGCATCGGCGACCGTTAGAATCAGAGCGAAAG
ATTACATGGTAGTCTTTTCTAAAGATAGCTATTTCCTGTATCATTTACGT
TATTTCCAATTCGCATCTGGTCCTCATAGTATACACAATGGTCAAAACCC
GCTCAAACTTAAAATGCCACCTTGGGTCCACAAAATAGACGCATCAATGA
CCATAAAAGGACAACTGTATATTTTCAATACGAGATATGTATGGAAAACG
AACTTAAATAATTTACAGATAACAGATGAGGGGCAAGCCAAAAACATTCA
GAATGTCTTCCCCGGTGTACCGAATGATTTGAGTGCAGCATTCTCAGGTG
TTCACCAAGAGAAAATGTTGACATATTTCGTTAAAAATGACTTGATATAT
TTATACAATGAAAGAACGAAGAAAGTTATGGACGGATATCCAAAACATTG
GGGAGAAACCATTTTGAATTGCAAGGATGCCGGCAAAAATGTTATAAACG
TCCGACACTGAACACAGGATGAAGCTTTTTGACCTATGAAAAATGATCAG
CCTTTTGACTGGAGGAGAGTATCGAAAAAATATGAATGAAGAATGTATAT
TGAGTTTATCGTTCTTCATCTGCAATTGGGctgttccagaaaaaaaattt
acccccactgttgaagatattaattttttcgaagtatcgaaccccctgga
tatcctactctATTAGTAATCCCCACCCGTTGATTTATAAGTATCCCCTG
GATTTCCAATCttaaaatatgctcaaccccctggatatcctctcttataa
agatgcttagcCCATGGATATCGTATTCTTTActttgaaaagacacttta
cccctggatatccgctcccttgtagatatttaaccccctggatatccact
ttttaacaaaaatcattaaactcctggatatccgatatcctcaacagggg
ggtaTGGACTAtttctgaaaaagcccattTCAGCTTTGAGCTTTGTTAGG
GCAATATGGTGATAGGCTTTTTACCTTCACTCATATGAATGAGGAAGATC
TGCTCGTTATACTTGGTGATATTTGAAGGATTGTTTTCAATGAATTAAAG
ACGAGaagattttttagaatttttttcaaactttaaaaaatatgaaCGTA
ACGATATTCGAATATCGGACAATAAGGTGTCCAAATGGCTTTAACACAAT
GAgcacaaacgtcttttggaagtctaatgtacgtttctaggacgtccaaa
GGTCTTAAAGCCGTCCATTGAATGTCCNcgtctaatgtacgtttctaAGA
CGCCCAAAGGTCTTAAAGCCGTCCATTGAATGTCCATAAGACGTTGCGTG
CCCATAGGGAAAGCATTTGGTTATCAGATGTTTTGACCTGCAGATACATC
CTGTTGTCCTGATTAAAACCTCCATGAATGTTTGTCTATCTAAAGTCGAG
AtatcaaagtttgaaatttctaaaaatggaTTCTTACACGTTCCTTTACg
tcaaaattctattgttctcacaTTGCTAAAATTCCAAAACTGAAAGTCTa
aaacttgtaacttaaatatctcgattttggaaaatagtaaggcaaaaata
ttttgaggtttaGC
Run BLAST on NCBI

transcript from alignment at scaffold_62:291709..301463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071585 ID=TCONS_00071585|Name=TCONS_00071585|organism=Clytia hemisphaerica|type=transcript|length=9755bp|location=Sequence derived from alignment at scaffold_62:291709..301463+ (Clytia hemisphaerica)
aaatcaatgaaaaataCTATTGAATAAAATCTTACAATTGCATGATGGAA
CTAGGGAAAATTCTATTGGTCAGCATCGTCATTGCAACTGTTTCTATTAA
AGATTCTGTCAACTCAGAAGATGCAGCTGAAATGGAAAAATATGCAAAGG
TAATTACAATCAATGACACAAtattttagatatttcaaagcaATGCCTCC
CCTTTCCCCTCcgattagcgagtttatgtatctgtgCTTTTGAGAACGGT
ATAGCGACTCAAGCGGTTTAGAATGAACCTCAGTTCTGACCCGTAAAatc
aaggacggtaaaagtgctgatttaccgtcgtcctcagttggtcatgatct
agtcaaattagaaccttaccgtctccgtcgctgaaaaagacacatacata
aactcggtattaatGTTGTACGAGAAGGAAATCTGGCTTGGAGTAAATTC
AGCTGGAACAGCATTGTTTTGGGGGAAGAGGGGGAAATGCTTGTTTTCAG
ACAGGCATCATGCCATAGGTTCCGTCAATAATTATAGCAAATGCACTTAT
ACGTAAACGCAAAAGCTTAATAGGAGAGGGTTTCATGGTTGTAGGAGCAG
CGGAACCAGTCATTTCTTTGAGCGGAGTGGCGGAATTATCATAAATTTGG
AAAGAATTTAGTCTCCTTATTGGAAACAGAAGGTTAAgctatttttccca
aaaaagggaaatttggTATGGGGTCGGCTTGTCGCCTCCTCGTTTCTGTC
GTATCAGTTGTGATAAACTCTCCTTATAGAAATACTTGACAAAATATGGA
TACAAATCAAACTGGTTATTGATCTATTCGAAATACTCATATGAAAAAGA
TCTTCGGACGTTTCAAGCATATTTCGGACAAAGAGTATCAGGCGTGTTAA
CGGAAGAAACGTACTCTTTGATGAAACAAGAGCGTTGTGGTATGTCTGAC
GTTGGGTTTCGTCTTGGTAAAGAGACGGAGCAGGAAAAGAAACATGATTT
TGTATTGCAAGGTACAAAGTGGACCAAGGTATGTTATAAAGATTATTTAT
CTTTTAATTGGGACCGTCTTAAGAATCAACTATTTCTAAGAAAGGTAGAA
TACCACAAATTCGGAAAGATGACGGATCACTCAAAATCTAATGTTGAGGA
AAGCGTATTGTTAAAATCTATAAAAGTCGTGGACACTTTATCAGGGGGAA
AGAATTACCGATCTTACCCGTGGCTATGCTAAAAATGTTGATGCAAATCT
AGAATATATCCTccggaaaaaaatatatacggAAATCTAAAATGCGTGTG
TTAACAAAATGAACTTACTTGCTATAAAAGTGGGTACTTGTTTTCCAGAC
ACCCTGTATATACTACAACCAGTGCCAAAATAGGGAAATTCCTCacgaaa
ttttataaccacaaacaatttggaagcacTCTAAAATAGGTTAGAAGAGT
AGAGCTccgagttttaacactagacctttaagacttaggacctcaggatg
tgaggatccaaaagtcaaaaatagtCCGGTAGGGCGTGAAATATAGTCTA
GAagccaataaatccctcccagatcgaaatgtTCGATGGAATCAAGTTaa
aggcccgaaattgacattctcgctcgaacttcaattttcgaaaaatggta
aaatagccaaaattttattgaaaatccttcttttattttcttcttaGAAC
ACCATACTTTGGGATTTTAAAAGCTTTCCAAAAcattccaaacaacaaag
agaaaaatacaacaaaatcataacaaaatcttttgaaagatgGTCAAAAC
ACACTAACCTTCGATTCGAAAAATCTTCATTGAATCCTGATATTGTTATC
AACATTACAAAAGGTATAactttttatacttttatataccatttcaaaat
ttccaattatGTGTGAttagtaaaaattttcattataagGTTTGCTGGCA
AATTATTGAGATActttattcctatttttatccttttataACCTCGATGG
GCAAgtggaattttttccaaaaaattaccGAAAGGATGAATATAAAAATT
TAACTCGAGAAAACGATACAtacttgtctcccgaatagacgtccccctcc
cgctaattgttaagaaaaAAAGTCCATCCCCTCCGCTCTTATTAAAACCC
Ccctgctaattaaattcgaatgatgattcaatatttcattacagtgtaga
tagaccttaaacttgttaaaattttcctttttgtcctTATTGGTTCTTAT
GTTACGTGTTCATTtgctaaagtttcttttttgttgctgAAATTGACATC
AGTTATcaaaaattctgtcttcaaattacccccccccctcttattccgtc
tcccccgcttattagaatttagaaaattttcctacccccctgcttattcg
gaccccccccgtctattcgggagacaagagtagtgTCTTCATTGGAGTTT
ACCCGAGAGGTTAGAgaagaatcttcaacctttcttaAGGAAGAAAAGAG
TGAAGCATTAAGCCTCCCGCTGAATTCATAATGGCAGGTTGAATTTAACg
ctttgtttgttttcacacggTCTTTTTGTTGAAAGCTGACGAGATATTTC
ACTTTGGGAATTGGAAATAAATGGCTCTTCGGGTGGTTCCATTTCCCATT
CAAGAGTCTTATCCCCCCTAGCCGCTTCggagctttaaactcaatgaatg
TTTCATAAAGAATTCATATAAAAGATATTTTCCACTTTTCTCTAGATTTC
CATAGAGATCCTTATCCATTCACCAAGGAATTCAAAGATCTTGGCCACGC
TTTCTACCCACTGAGTCAAAGAGGTCTTGCAGGCGATATCCATTTAAATC
AAGATTTGGTTGAAGGGAAAGCAGATGCAGACTTTAATTGGCTTTTTACT
CATATGATTGGTACGTATTCGTAGTCCATATATTTATATACCTACAATCG
GCGCcaaaatatattggcacttttgggttttttaacgtttttcagagtTT
AAAGATCTGGCGAGAATTGCTGGAActtcagtacttccactaagtttcat
tggatttttcgatttgggaagGGTTAAGTGACTTCCAGGCtattttttca
gccttattggaacatttttgggcttttagatcctgagatcctaaggtcct
tagtcttaagtctcatgttaaaactcagagttaaaactttactttccaac
cgtactttaaagcacttaagggctctgaccataaatcaaaaaattgattt
tggtattcgAGCATAAATGTTATGTTTCAGGTTCctttacacttttaaca
aagaattgtctTAATTTCTTTGCAGGTCACTCTCTTGGTATCGAGCATAC
AAACGATCCGACCTCAATAATGTATCCAATcaataagaattttcaaaacg
aggctgacTTTCAAATCTCTACTGGCGATAGATTAGCTGTTCAACAGTTG
TATGGTAAGTttgcaataaatttttttttcatattttttttgtaagaatg
gtgtaaatccatttcatcatggaaatttttaacttctttgggaaaattat
cctaaaatattcttacaacattcttaggttaggatcttAATTCAGACTAT
acttaacatttagtacatacgtctcaagcataaaatggcatttttgtgaa
agaagcCTTTCTTCGGGgtaattgataatttttaattaaaaatatgctct
aaaaatagcattcttagcttgagtagcaaacttccatgatggtgatattt
ttagcAGTATTCCTataaatttttggccatttttatcatggtcattctta
taaagtgtattcttataaaaaaaagcgtgtatttagtTTTTCGTCATGAT
TTTCTTGATCTCCGActaacaaaaaagttttatatatttCATGTATGTGT
AATGTATATAAAATGCTATGATTCAAACTGATACAAAGTGGAAAACTAAT
GTAGTAACAATTGATTAAGAATAGAGTAGTCTAGCTATATGGCATTGATA
ATAAATCGATAGGTAAGCTGAGTATGGTGGACGCTTGAAGAGGTGGTTTG
TAGCACGTGGAAGCCATATCAACGTGATTATAGGAATCCCTGTGTCACAT
AGTAACTGGTACTCCCAATCCTCTAGAACAATTGAGCAAAATTTCTTCCC
CAGTGGGAAAAATActctacaatttcagccccattgaTTGAAAAAACAGT
CAAACATTTAAGAAAAACATATTGACGACGAGCAAATTGCTTAAAAATGA
ATGAACCCTTGTGGGTGAATTATCTTtgaaacaaaatgataaaactgTAG
TATGACATGAACATGAACAAGAAGTTCTCTgtcctcaaaatttcaaatat
ttatgtaacaaaatttcaatattttttgcagGAAAACCACCAGCATTAAA
AACAACAGTAAAAACACAAAAGACTAAACCTACAACAGGGACGATCCAGA
CGAGCACAGTAAAACAATCAGTCGATAAAATAACAACAACACCTCCTGCA
ATGAGAATTTCTACACTGACCACCCCCGCAACAACTACGACCTCACCCAC
AACAACTACGACCTCTCCGACAACAACTAAGACCACTCCAACAACAACTA
CGACAACTACGACCATCCCTAAAACAACTACGACCACTTCgacaacaact
acaacaacccCTATAACAACTACGACTATCCCCGTAACAACTACGACCAC
TCCAACAACAACTACGACCATCCCTTCTAAATCAACAATAACCACTCCTT
CAAGGACCACTACCACACAATTAAATGTAAATCGTAAAACATGTCCTGAA
TTCGAAGTCACAGCACTAGTATACTACCCTTTCCATAAAAGACTATTAGT
TTATCTACAAAGCGATAAAATTATGATGGTGAATTCAAAAGGGGTATCGT
ACACGACTTCAAGATATGCTCTGATCGCACGTCGCGGTGAATACTTGAAA
TGTGTGGATGCATCGGCGACCGTTAGAATCAGAGCGAAAGATTACATGGT
AGTCTTTTCTAAAGATAGGTGAGTATGATATCAAGGTCTTAATTTTTGAC
TTCCTATTTTCTAACAAACGCACCCAAATAGTGCCATAGGCGAAGCTATA
TACCCTGCAAAACTTATGAGGGGTGAAGAgctttatgacatattcatttt
cttttgataaaacaaaggcaataattacagtgtcgtaaaaaccgctctca
tccataaattttgcagggtatctggCTACGCCTATGCAGTGCCAGATTTT
GACTATCACTATCGTGTTTCATTTGCTGAGATCTTTAATCTTtagtaatg
tttaaaaatcgggTAAATCCAGAATTAATTTTTGTAATAAGTGATTTTCA
ATTTCCTAAAAGAACCGCATTCTTTGGGTCAATAAAGCCCTTATGTGTAC
AGTTTTAACACAAAAGTTTGTTTTAATGAAGTTGCTCAAAATCGAGTAAT
TTAGGAAATGTTTGATTTTAGAGCTCTCAAAATCCTTCCATATCCCGCGT
AAGATCCCCCAAAATCGGAATCGGAATAATTCTTGATTAATAAGGAGTAA
AGCTATGAAATTTTCACTGGATATCTGTTTTATTGTTCTGTatcgaacaa
agaaaaaaattttaaacatcataaatttttcttcacaacgcaaattgaac
attttttgaGTCCGAAAAATCCGATTAGGGTTGGCTTTTTGTCCGGTCTT
TTCGTTAGAAAGATGACTTACGTATATCCAGAATGAAAGTTTAGGATGTC
ATCACTTGGATACATTATGATACTAATCAATGATAGACACATGGTCTTTC
GTTATTTACTTTTACTTTTGTGCACTAACATATCCCCTTAGAGGGGCGTA
CGGGACTTCgtaataccgatataccgatcactttttctctcaattaccga
tataccgataattttttcgttcaaataccgataccgatcaatttttcccc
attttttaggTACTCGTCCcccggagggggtacttaggcaaaaatgggag
CTTAGTATGTGTAGACGATAAAGGTCGGGTATTTCATCATCTAAAATTCT
CTATAACAATTACCAAACTGTAGCGTGTTGGGTAGGTACAGGCTGGTAag
caaaagtagaattttggctTAAGATGCCCCCTTGTAGGCTTATTATTCAG
GCGCCCATTTTGGTGGCATTAAACCGAAAGTTGAACTTAAAATTTAggtc
attttagaaacatttaggaaatgcgagcgaagcgagaaagaAAAATTTGC
GACATTGTTCATCTAGATGGATTGAGTAAAGCCTAGCAGAGGCGTTTTCG
TTTCGGGGGGGGGcgagattggaaaaattttgaccttttttaggGGAAAT
TTTTTCAGAATAAATTTTTGCTCTAAGCAAGCTCAAAGTTagcgagaata
aggtcacaaaaagtGTAGAAAGCATAAAATTTCATGTCGCAGAGAGTTTG
CTTTGTAAtcttggaaaattttggcctaagaaatatcaaacagcttaaag
gaggccttaaaaaggtcaaaggtagccagaaaaaggtcacaaaaacTACA
AACCCCTTCAAATTCTGTTGggaaaactttgacctttttggtcactaatt
tttttctttggtgGGGGGCGATCAATTACAGTTTAGGATaatttcaagat
tttggcgttCAAAAAAGCTCAACTTGGGGAGGCGTGACCCCCTGTCAAAA
CGCCAATGGATCGAAAATGGGAGTTTATCAAAGAGTAGAACGTCAATTTA
GAGAGCGTCACTGTATTCACGGCAGAAAAATGGTCATTCACGTGTCAAAC
AGACCCCTGGCTGAGCCTCTTGCCTTATCAAAATTGCAGCAATGATTTTT
CAAATCGGCGCCCCTGAGTGTTCCTTAATTTGTACTAATTTACGTATGAG
GGAGGGATTATTTAGTAGATCAGCGCTCAGAACATATTGTTCATATATTC
GAATAGTAAAGGAGGCTTtggccaaatagaaaatttttgaaagtcaaccA
AATAACATAAACTCGAGATCTTTAGAGTAAATGGTCATTCttcatataaa
tttttattttaaacaatataTCGACCTCCTTTAGTATGGACGTCTTCATC
GGGTTTACAAATGTTCAGTTGAGATCATTGTTTTGACGTCATATGACATT
AATGCAATGACCTCAACTTAGTATGCGACAGCATTGGTTTCCAGATTTAG
ACCACGTTATGTGTCGCCGTCTCACGGAACTGGATCTCCAAATGTTTATA
AATGTATGTTCTCTTGATTTGACAGTGTATGCAAAAGAAGTAAGGTATAA
GCTGTTCTGTTTTTATTTCAGCTATTTCCTGTATCATTTACGTTATTTCC
AATTCGCATCTGGTCCTCATAGTATACACAATGGTCAAAACCCGCTCAAA
CTTAAAATGCCACCTTGGGTCCACAAAATAGACGCATCAATGACCATAAA
AGGACAACTGTATATTTTCAATACGAGATATGTATGGAAAACGAACTTAA
ATAATTTACAGATAACAGATGAGGGGCAAGCCAAAAACATTCAGAATGTC
TTCCCCGGTGTACCGAATGATTTGAGTGCAGCATTCTCAGGTGTTCACCA
AGAGAAAATGTTGACATATTTCGTTAAAAATGACTTGATATATTTATACA
ATGAAAGGTAAGAAggcctttttaactttttaagatAACACCTTTTTTTC
GATTGtagccactgacctttatatccctggaccaatttatatctgccatc
tttgatcgaagattttgcttggccgggattgagaaacttgatccagggtt
tataaaggtcagtgattgtAACCCTACTTTGAGTCAATTTTTGAATATCA
CGATGTGACGACAAATCTCGATTCTATATTCAACGCGCACTCAGCATAAA
TTAAAGTAACTATGACAATCATCTGAGGTCTTGGATGTAGGTAGCGAGAC
CCTCTCTAAAAGTTGGGATTTTCATGTTGTTTCTTAGtgaggattttcaa
aaaatagaagCCGGGCTCAAAacacgtctagtataggctaggaTGAAGGC
CGTGCTCTCCATTTCTGACTATTTGAATAATAATGTGATTGAGACATGTG
CGATAACTTTCTTATTGGTCCGTCTTCACAgtttaaatttcttaaattgt
tctagGCAACTCCCTATAAAAGGTTTACTCCGGGAAATTCACCTTCCTAG
GTGCCTTTGAAAAGAAGGTTTAGAATGAATAGGGACTTTTTTGGTCAgct
aaaagttatttttaaaatcaaactaGAGGACTtttcagtagcgtagacag
aacaggcgcaaaatttgtgtaggagagcagatttttatgaaactctaatt
atcttttttacattttgaatAGGTAATTAcaatgtcataaaaatctgctc
tcctacacaaatctTGCGCCCTTTCTGTCTACGGTACTGCTTTTAAGGTC
CGTGTgggttgaaaaaaattaaaaggatCAAATTTAGGTAGTAACATTTT
AACAAGACACTTCTTACataaatcattttatttttgtctCGTTTTTTCTT
ACTAGAACGAAGAAAGTTATGGACGGATATCCAAAACATTGGGGAGAAAC
CATTTTGAATTGCAAGGATGCCGGCAAAAATGTTATAAACGTCCGACACT
GAACACAGGATGAAGCTTTTTGACCTATGAAAAATGATCAGCCTTTTGAC
TGGAGGAGAGTATCGAAAAAATATGAATGAAGAATGTATATTGAGTTTAT
CGTTCTTCATCTGCAATTGGGctgttccagaaaaaaaatttacccccact
gttgaagatattaattttttcgaagtatcgaaccccctggatatcctact
ctATTAGTAATCCCCACCCGTTGATTTATAAGTATCCCCTGGATTTCCAA
TCttaaaatatgctcaaccccctggatatcctctcttataaagatgctta
gcCCATGGATATCGTATTCTTTActttgaaaagacactttacccctggat
atccgctcccttgtagatatttaaccccctggatatccactttttaacaa
aaatcattaaactcctggatatccgatatcctcaacaggggggtaTGGAC
TAtttctgaaaaagcccattTCAGCTTTGAGCTTTGTTAGGGCAATATGG
TGATAGGCTTTTTACCTTCACTCATATGAATGAGGAAGATCTGCTCGTTA
TACTTGGTGATATTTGAAGGATTGTTTTCAATGAATTAAAGACGAGaaga
ttttttagaatttttttcaaactttaaaaaatatgaaCGTAACGATATTC
GAATATCGGACAATAAGGTGTCCAAATGGCTTTAACACAATGAgcacaaa
cgtcttttggaagtctaatgtacgtttctaggacgtccaaaGGTCTTAAA
GCCGTCCATTGAATGTCCNcgtctaatgtacgtttctaAGACGCCCAAAG
GTCTTAAAGCCGTCCATTGAATGTCCATAAGACGTTGCGTGCCCATAGGG
AAAGCATTTGGTTATCAGATGTTTTGACCTGCAGATACATCCTGTTGTCC
TGATTAAAACCTCCATGAATGTTTGTCTATCTAAAGTCGAGAtatcaaag
tttgaaatttctaaaaatggaTTCTTACACGTTCCTTTACgtcaaaattc
tattgttctcacaTTGCTAAAATTCCAAAACTGAAAGTCTaaaacttgta
acttaaatatctcgattttggaaaatagtaaggcaaaaatattttgaggt
ttaGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044478XLOC_044478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071585-exon-scaffold_62-1491911889:291709..291857TCONS_00071585-exon-scaffold_62-1491911889:291709..291857Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:291709..291857TCONS_00071585-exon-scaffold_62-1510915933:291709..291857Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:291709..291857TCONS_00071585-exon-scaffold_62-1575043694:291709..291857Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:292488..292719TCONS_00071585-exon-scaffold_62-1491911889:292488..292719Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:292488..292719TCONS_00071585-exon-scaffold_62-1510915933:292488..292719Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:292488..292719TCONS_00071585-exon-scaffold_62-1575043694:292488..292719Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:293406..293571TCONS_00071585-exon-scaffold_62-1491911889:293406..293571Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:293406..293571TCONS_00071585-exon-scaffold_62-1510915933:293406..293571Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:293406..293571TCONS_00071585-exon-scaffold_62-1575043694:293406..293571Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:294454..294618TCONS_00071585-exon-scaffold_62-1491911889:294454..294618Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:294454..294618TCONS_00071585-exon-scaffold_62-1510915933:294454..294618Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:294454..294618TCONS_00071585-exon-scaffold_62-1575043694:294454..294618Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:295034..295162TCONS_00071585-exon-scaffold_62-1491911889:295034..295162Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:295034..295162TCONS_00071585-exon-scaffold_62-1510915933:295034..295162Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:295034..295162TCONS_00071585-exon-scaffold_62-1575043694:295034..295162Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:296090..296726TCONS_00071585-exon-scaffold_62-1491911889:296090..296726Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:296090..296726TCONS_00071585-exon-scaffold_62-1510915933:296090..296726Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:296090..296726TCONS_00071585-exon-scaffold_62-1575043694:296090..296726Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:299030..299365TCONS_00071585-exon-scaffold_62-1491911889:299030..299365Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:299030..299365TCONS_00071585-exon-scaffold_62-1510915933:299030..299365Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:299030..299365TCONS_00071585-exon-scaffold_62-1575043694:299030..299365Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1491911889:300264..301463TCONS_00071585-exon-scaffold_62-1491911889:300264..301463Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1510915933:300264..301463TCONS_00071585-exon-scaffold_62-1510915933:300264..301463Clytia hemisphaericaexon
TCONS_00071585-exon-scaffold_62-1575043694:300264..301463TCONS_00071585-exon-scaffold_62-1575043694:300264..301463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_62supercontigscaffold_62:291709..301463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115949	0.128525	0.24742	0.235497	0.376871	1.97492	3.15076e-05	1.02634	2.51073e-09	0	0	0.000279237	0	0.000123546	9.26396e-07	0	1.7834e-09	2.14568	1.10323	0.0131109	0.508824	1.51558	0.0364095	0.0777047	0.0313138	0.000287258	1.24683	1.0422	5.61006e-06	0.129327
Blast
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BLAST of TCONS_00071585 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.850e-22
Identity = 60/184 (32.61%), Postives = 96/184 (52.17%), Query Frame = 1 
Query:  334 LVKRRSR-KRNMILYCKNTILWDFKSFPKHSKQQREKYNKIITKSFERWSKHTNLRFEK----SSLNPDIVINITKDFHRDPYPFTKEFKDLGHAFYPLSQRGLAGDIHLNQD--LVEGKADADFNWLFT---HMIGHSLGIEHTNDPTSIMYPINKNFQNEAD-FQISTGDRLAVQQLYGKPP 852
            LV+RR R   +  ++ K T+ W  +SFP+ S+  +E    +++ +   W   + L F +        PDI+I+  + FH+D YPF      L HAF+P  +  ++GD H + +     G  D +   LF    H  GH+LG+ H++ P SIM P  +    + D +++S  DR  +QQLYGK P
Sbjct:  101 LVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFHEVDSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFP-GEHPISGDTHFDDEETWTFGSKDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYGKAP 283
The following BLAST results are available for this feature:
BLAST of TCONS_00071585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP254.850e-2232.61Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP... [more]
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