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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072081 ID=TCONS_00072081|Name=TCONS_00072081|organism=Clytia hemisphaerica|type=transcript|length=1677bp
cctgagaaaagctggtaacagacggacggacgaacagacgaacggacgga
catcggttaatttataggacctctaccccaccggggtaggtccaaaaagg
taaGTCTAGCCTAGCCTAATTGTCAGCTGTCAGGGGGTGTTAAAAGAATA
TGAGTTTATTTACACCAAAAACGGGACACGCGGTTTTTCCCAAGCTGCCT
TTAGAAAAAACCCTTTCCTATCTTATGCCGGCCATCCTGCAAAAAAATAG
AGGGTATTCCAGAAAAATTAGGAGAATCTTAGTGTAGGAACAGGAATCTT
ATGCAAAATAACATTATTTTGCAGCTTTTCAAAGAGTTTTAAATATTACT
GGGTCAGGGTCCAAATTTGAGGAATATTGAATGAAAAGCAATTTTAATAA
GCATATATAAAATGAGCTAGTCTCAGTCTTTAATTTTTAAGTTCAGTCTG
GCACATTCTTGCAATTGCATAGGGTGCGCATTTGAATTGGGTTTACCATA
CCCAGTAAAAATGCAATAAGATATCATGGGCATAAAATGCTAATTTAACC
TTTAAAtctagttgttttggagaacgcgaCGCGGCCTTTCGAATAACAAA
TTAATCCACATACATtatactttccctcagccaataaaaaacgtgataaa
ttatcttgtctctaggtaactgttgTGGGTTATTCGATAGGCCGTCGTGT
TCTTCAAAACAACTATTGAAAAAGGCAAAAGACAAATTGAAACAGTCAAC
ATTTATTCtgtaaaataatattcaaatatatCATCATCCTCTAATCTCAA
AAACTCTCACTGATTCTATTTTCTATTCAGCTCAGGTTGTGATCAAGGCA
AAATCTATTTATTcactattttctttttagcttaTATTTAAAATACTGAA
TTATAGTATTTAAAATTTCAAGTACAGTaatcatatttatatttatatat
tatctaaagattttaatgtataattttaatgtATGATTTTAATGTATATT
TCTTTCAAGTCTACGATCACATTAGCCTCTCACTTTACTACATTATTACT
ATATCCTTGTGGTGGTCTTTCAGCTCCAGTCATATCTCGCCCCTTTTAGC
TTTAGCTGTTTTCACTTGTTATTAGGTAtttttgattacttttattttca
atatcatgatgatgtacgttagcgtattatgtgattaattaatagaacta
gaactaaaactttgagttaatgaacgccgtattaaaaaatacactatgca
tagccctcaaatgaatgacctatCTGGTCactaaaatacaaagttaaatc
aaaacaaaaatggtagagtagatctgcaagcggagctgcgtagttcattt
gttttgaatttttgctgCTTTtaatttgattggtcagtcatttgatggct
atgcaagtttccctcaactgatgcaagttacccgacttcacggcaTATGT
TATTATAAGAGTTAGTGGAGTGCATtgtgcaagttacccgatctcacgat
ATTCATGCCCTTTGAGAGAGCAAGATGACTTGAATGGTTGATAATTACTT
TTTTCAGATGCAGATTTTCTAGAAATATCTATTTTTGTGATAATGAATGA
AGTAAATACAATTTTATACATTTACCTAAATAcacttactcttaggtgcc
aaataaacagggggggttcgaataaac Run BLAST on NCBI transcript from alignment at scaffold_70:21918..23594 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072081 ID=TCONS_00072081|Name=TCONS_00072081|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_70:21918..23594 (Clytia hemisphaerica)
gtttattcgaaccccccctgtttatttggcacctaagagtaagtgTATTT
AGGTAAATGTATAAAATTGTATTTACTTCATTCATTATCACAAAAATAGA
TATTTCTAGAAAATCTGCATCTGAAAAAAGTAATTATCAACCATTCAAGT
CATCTTGCTCTCTCAAAGGGCATGAATatcgtgagatcgggtaacttgca
caATGCACTCCACTAACTCTTATAATAACATAtgccgtgaagtcgggtaa
cttgcatcagttgagggaaacttgcatagccatcaaatgactgaccaatc
aaattaAAAGcagcaaaaattcaaaacaaatgaactacgcagctccgctt
gcagatctactctaccatttttgttttgatttaactttgtattttagtGA
CCAGataggtcattcatttgagggctatgcatagtgtattttttaatacg
gcgttcattaactcaaagttttagttctagttctattaattaatcacata
atacgctaacgtacatcatcatgatattgaaaataaaagtaatcaaaaaT
ACCTAATAACAAGTGAAAACAGCTAAAGCTAAAAGGGGCGAGATATGACT
GGAGCTGAAAGACCACCACAAGGATATAGTAATAATGTAGTAAAGTGAGA
GGCTAATGTGATCGTAGACTTGAAAGAAATATACATTAAAATCATacatt
aaaattatacattaaaatctttagataatatataaatataaatatgattA
CTGTACTTGAAATTTTAAATACTATAATTCAGTATTTTAAATAtaagcta
aaaagaaaatagtgAATAAATAGATTTTGCCTTGATCACAACCTGAGCTG
AATAGAAAATAGAATCAGTGAGAGTTTTTGAGATTAGAGGATGATGatat
atttgaatattattttacaGAATAAATGTTGACTGTTTCAATTTGTCTTT
TGCCTTTTTCAATAGTTGTTTTGAAGAACACGACGGCCTATCGAATAACC
CAcaacagttacctagagacaagataatttatcacgttttttattggctg
agggaaagtataATGTATGTGGATTAATTTGTTATTCGAAAGGCCGCGtc
gcgttctccaaaacaactagaTTTAAAGGTTAAATTAGCATTTTATGCCC
ATGATATCTTATTGCATTTTTACTGGGTATGGTAAACCCAATTCAAATGC
GCACCCTATGCAATTGCAAGAATGTGCCAGACTGAACTTAAAAATTAAAG
ACTGAGACTAGCTCATTTTATATATGCTTATTAAAATTGCTTTTCATTCA
ATATTCCTCAAATTTGGACCCTGACCCAGTAATATTTAAAACTCTTTGAA
AAGCTGCAAAATAATGTTATTTTGCATAAGATTCCTGTTCCTACACTAAG
ATTCTCCTAATTTTTCTGGAATACCCTCTATTTTTTTGCAGGATGGCCGG
CATAAGATAGGAAAGGGTTTTTTCTAAAGGCAGCTTGGGAAAAACCGCGT
GTCCCGTTTTTGGTGTAAATAAACTCATATTCTTTTAACACCCCCTGACA
GCTGACAATTAGGCTAGGCTAGACttacctttttggacctaccccggtgg
ggtagaggtcctataaattaaccgatgtccgtccgttcgtctgttcgtcc
gtccgtctgttaccagcttttctcagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072081-exon-scaffold_70-1491911889:21918..23594 | TCONS_00072081-exon-scaffold_70-1491911889:21918..23594 | Clytia hemisphaerica | exon |
| TCONS_00072081-exon-scaffold_70-1510915933:21918..23594 | TCONS_00072081-exon-scaffold_70-1510915933:21918..23594 | Clytia hemisphaerica | exon |
| TCONS_00072081-exon-scaffold_70-1575043694:21918..23594 | TCONS_00072081-exon-scaffold_70-1575043694:21918..23594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_70 | supercontig | scaffold_70:21918..23594 . |
Blast
The following BLAST results are available for this feature:
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