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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072088 ID=TCONS_00072088|Name=TCONS_00072088|organism=Clytia hemisphaerica|type=transcript|length=417bp
CAGTCAAAATGTATTCTTAAAAAGTAATCTTTGATCATTTTACATAATAA
AAATGGATTCTGAAAATCCATCAGAAAATGACAGTAATGATGGAGGAACT
GGCTCAGATCATACTCCAAATCACTCACCCAACCTCAGTGGAGcacgaaa
aaaaaagtcaaaatcaaaaaaaggcTTTGGTTTACGTCAACAGTTGGGGA
AGCTGGGAAACATTCTTAAAAATCCATTCCACTGGAAagataaaagcaaa
aaattaatCCTTGACGAAACTTTTATGCATGATAACTTCAACATCTTTCT
TAATCTTGACCAACTTGGAAAGGATGGAAGAGAAGTAAGGAATAGCCAGG
ATGAAAAGTCAAATATTGTAAGTGATTATTATTATAAAATCTTTGTCGGG
TCAAGGGAAAGATTTGG Run BLAST on NCBI protein sequence of TCONS_00072088-protein >TCONS_00072088-protein ID=TCONS_00072088-protein|Name=TCONS_00072088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDSENPSENDSNDGGTGSDHTPNHSPNLSGARKKKSKSKKGFGLRQQLGK
LGNILKNPFHWKDKSKKLILDETFMHDNFNIFLNLDQLGKDGREVRNSQD
EKSNIVSDYYYKIFVGSRERF Run BLAST on NCBI transcript from alignment at scaffold_71:8841..10031+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072088 ID=TCONS_00072088|Name=TCONS_00072088|organism=Clytia hemisphaerica|type=transcript|length=1191bp|location=Sequence derived from alignment at scaffold_71:8841..10031+ (Clytia hemisphaerica)
CAGTCAAAATGTATTCTTAAAAAGTAATCTTTGATCATTTTACATAATAA
AAATGGATTCTGAAAATCCATCAGAAAATGACAGTAATGATGGTAAGatt
attgttttttctttattgttgaaatactttatttacaaaaagattcTCTC
CGATTTagtttttaaggattttaaaatATTGTATATATATCTTAAACTTA
TACCTTACTACTCAAGTTATTAAAAGAATTCGTGTTATGCCGGtgttttt
tttagaatgtaCCTGATGGACTTCTCAGAGATCTttaaaatcatcttttt
tgCAATATCTTCTTTGATGTTAGGAATTTTTGGACATTTAAACTTGGACG
TATTTTTCCACGAGGATTCCAGGTTGCGGAGTAATTTGGGATGAAATATT
CcagaaaatcaagattttttgatttttactataGCAATTTCTTAAAATGG
TTTTATCATCTAAACTCTTCGGAAATCTATTGTTGATaccataaattttc
aaatttaaattcaagGAGTAGAAAAGAATGAAGAAttccacaatttttga
ttttgggcagtaagaaaagttttttttttctcaaaataaattgaaatatt
cttgtaaaagttttcattaaaaaggttGCCTCAAACAGGAGAAACCCCAA
AAAGACAATTTGGtacattataaaaaaaacactgaCTTATAACACAAATT
GGTTACCCTCACATTACTTAAGACTGTTTAGCATAATATGTTTAGGTGAT
TTTTGAAAACCCTGCTTTTTCCGTTGATTGATTTTGGCACTCATTCTTAC
TGCCTTAAATGATTATTTATAAAAGTATTATAGGgttgtttgttttattt
gatttttgtttgataGGAGGAACTGGCTCAGATCATACTCCAAATCACTC
ACCCAACCTCAGTGGAGcacgaaaaaaaaagtcaaaatcaaaaaaaggcT
TTGGTTTACGTCAACAGTTGGGGAAGCTGGGAAACATTCTTAAAAATCCA
TTCCACTGGAAagataaaagcaaaaaattaatCCTTGACGAAACTTTTAT
GCATGATAACTTCAACATCTTTCTTAATCTTGACCAACTTGGAAAGGATG
GAAGAGAAGTAAGGAATAGCCAGGATGAAAAGTCAAATATTGTAAGTGAT
TATTATTATAAAATCTTTGTCGGGTCAAGGGAAAGATTTGG Coding sequence (CDS) from alignment at scaffold_71:8841..10031+ >TCONS_00072088 ID=TCONS_00072088|Name=TCONS_00072088|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_71:8841..10031+ (Clytia hemisphaerica)
ATGGATTCTGAAAATCCATCAGAAAATGACAGTAATGATGGAGGAACTGG
CTCAGATCATACTCCAAATCACTCACCCAACCTCAGTGGAGcacgaaaaa
aaaagtcaaaatcaaaaaaaggcTTTGGTTTACGTCAACAGTTGGGGAAG
CTGGGAAACATTCTTAAAAATCCATTCCACTGGAAagataaaagcaaaaa
attaatCCTTGACGAAACTTTTATGCATGATAACTTCAACATCTTTCTTA
ATCTTGACCAACTTGGAAAGGATGGAAGAGAAGTAAGGAATAGCCAGGAT
GAAAAGTCAAATATTGTAAGTGATTATTATTATAAAATCTTTGTCGGGTC
AAGGGAAAGATTTATGGATTCTGAAAATCCATCAGAAAATGACAGTAATG
ATGGAGGAACTGGCTCAGATCATACTCCAAATCACTCACCCAACCTCAGT
GGAGcacgaaaaaaaaagtcaaaatcaaaaaaaggcTTTGGTTTACGTCA
ACAGTTGGGGAAGCTGGGAAACATTCTTAAAAATCCATTCCACTGGAAag
ataaaagcaaaaaattaatCCTTGACGAAACTTTTATGCATGATAACTTC
AACATCTTTCTTAATCTTGACCAACTTGGAAAGGATGGAAGAGAAGTAAG
GAATAGCCAGGATGAAAAGTCAAATATTGTAAGTGATTATTATTATAAAA
TCTTTGTCGGGTCAAGGGAAAGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072088-exon-scaffold_71-1491911889:8841..8932 | TCONS_00072088-exon-scaffold_71-1491911889:8841..8932 | Clytia hemisphaerica | exon |
| TCONS_00072088-exon-scaffold_71-1510915933:8841..8932 | TCONS_00072088-exon-scaffold_71-1510915933:8841..8932 | Clytia hemisphaerica | exon |
| TCONS_00072088-exon-scaffold_71-1575043694:8841..8932 | TCONS_00072088-exon-scaffold_71-1575043694:8841..8932 | Clytia hemisphaerica | exon |
| TCONS_00072088-exon-scaffold_71-1491911889:9707..10031 | TCONS_00072088-exon-scaffold_71-1491911889:9707..10031 | Clytia hemisphaerica | exon |
| TCONS_00072088-exon-scaffold_71-1510915933:9707..10031 | TCONS_00072088-exon-scaffold_71-1510915933:9707..10031 | Clytia hemisphaerica | exon |
| TCONS_00072088-exon-scaffold_71-1575043694:9707..10031 | TCONS_00072088-exon-scaffold_71-1575043694:9707..10031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:8841..10031 + |
Blast
The following BLAST results are available for this feature:
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