|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072092 ID=TCONS_00072092|Name=TCONS_00072092|organism=Clytia hemisphaerica|type=transcript|length=1389bpRun BLAST on NCBI transcript from alignment at scaffold_71:40820..52643+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072092 ID=TCONS_00072092|Name=TCONS_00072092|organism=Clytia hemisphaerica|type=transcript|length=11824bp|location=Sequence derived from alignment at scaffold_71:40820..52643+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072092 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3) HSP 1 Score: 257.684 bits (657), Expect = 3.583e-74 Identity = 174/495 (35.15%), Postives = 249/495 (50.30%), Query Frame = 1
Query: 1 VTEGVDALFFNVVILGMLQTPLGKVWHKNQQDYVIIEMTTTHTNSVS-------------NFMAMLPQTRCATPQETINFYKNDEVISPTKYCQLNLLSLEPFRRVHTYLEAYVAGEEILNQLAYFVASEEALTILQKVAMLEMFVRKCGVLNPTWMEIRNFVYFFNMQLMDSENCIYTSVE-CSEMFPGFKNFVLKFLLRMAKDFSTRSLGDDDTNK----------LESGGFLLELKTKWEQSHHPYLFFNKDGGTFTFFGL----NINQAGDLVHKRPNGSNEIVEPQLMNSKLH-GILSENMKFDIVNFASDYQKLPREKKLTILYRVLIGGSDFNFDPDPNYQLTVDNMKKMLAIFTRIKCSIPVILMGETGCGKTSLITFMCKILAKSKEASNLVLVKIHGGVTKQHIMQHV---QNAXXXXXXXXXXXTILFFDEANTTDAIGLIKEIIIDKSXXXXXXXXXXXXMVVIAACNPYRRHSQDMIERLES 1389
V G+ F ++IL L GK+W +N I+E+ T+ S +F+ + P+ C P+E I+ + L E F+R + YL + ++ L+ Y S E L+ F+ CGV+NP+W E+RNF F N QL D E ++ + + GFK FV+ F++ MA+DF+T SL D + E L+ +WE HPY+FFN D T TF G NIN + D + + + ++++ +M L+ G+L + + F++ D+ KLPR KKL L L G DPD Y+LT DNM K+LAI R +C IPVI+MGETGCGKT LI F+ + A + LVK+HGG T I V +N K TILFFDEANTT+AI IKE++ D + E++ + +IAACNPYR+HS++MI RLES
Sbjct: 2062 VQTGIWVFLFKLLILQYLMDINGKMWLRNPCHLYIVEILERRTSVPSRSSSALRTRVPQFSFLDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWEFCSETFQRPYQYLRRFNQNQD-LDTFQYQEGSVEGTP----EECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNINGSVDAIS---HLTGKVIKRDVMTRDLYQGLLLQRVPFNV-----DFDKLPRHKKLERL--CLTLGIPQATDPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRGGTNADTIKLVKVHGGTTADMIYSRVREAENVAFANKDQHQLDTILFFDEANTTEAISCIKEVLCDH-MVDGQPLAEDSGLHIIAACNPYRKHSEEMICRLES 2540 The following BLAST results are available for this feature:
BLAST of TCONS_00072092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.