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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072169 ID=TCONS_00072169|Name=TCONS_00072169|organism=Clytia hemisphaerica|type=transcript|length=2734bp
gtttttaagGAAGTGAGAACATTTTTGTGATAAACATATACCATGGTCTA
CTTGTCTTGATCTAGCTTTcaattacttttattttcaatttcaattttca
atctaCTTAGTCGAatacttttttcttataaatgatgtttttttaaaCGT
TACATTGTATATATTGAATGCACTTTTCTCGTTATTTACACGgcaAACTA
TAAGAGAGGGTCTTCGATTCTCAGAAATGAGTCAACATTCAATGATTACT
GAACAAGCAATCAACCCTTACCTTTCATCGCGTGGAACTTCAAATCATAT
GATTCAGTCTATGGCCCTTGGTAACCATCTGACTGACAATAATAATTCAA
GCAATAATAATTACTTCAGTGAAATACAAATGGATGACGGGAAATGGACC
CGACATCAAACACAGATCTTAATTGACACCTGGAAAGAGCATAAAGATAT
CTTATTAAGTACTGGATCAAGCTCAGCTGAACATTTTCGTGTCTGGAAAC
TCATTGCGACTGAAGTTAACAAATTCGCACCACCCAAGAGTCTCCAGCAA
TGCAAGAAGAAGTTCCGTAATATACGATACATTTGTAAAATGGCCATGAA
TAATAACAAACAAGAGGGCGGTAAGAAACATTATCCAATGTTTTATTCAG
ATTTCCTTGAAATCATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAA
ATAGAATCACCCAATGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGA
CCTGTACGGGACTGGATATCAGAATCCGTCACCACAAGACAGCCAATACG
ACGAACGATCGTCATCCGAATTAAACACACGTCGCGAAGACGAACTAGAC
GAGCGACGTACTCAGCAATCGGGTAACGTTAATAACAGTGAAGGTTCTGG
AAGCTTTAACGGAAGTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAA
CAACGACGTCACCAAATCATCAACCGACCGTATCCGAAACGAACGTCACA
AACGAGCGAAGGGAAACCGCCACTGAAAGCCATCATCATTCCTTACAAAA
CGGGGATCTCGAGAACGGCCATAGTAGAATCAACGAACGCTTATCAAATT
ATTACTCACACCACGATTCTATGTATCCGCCCATTTATTCGACCAGCTCT
NCGCACCACCCAAGAGTCTCCAGCAATGCAAGAAGAAGTTTCGTAATATA
CGATACATTTGTAAAATGGCCATGAATAATAACAAACAAGAGGGCGGTAA
GAAACATTATCCAATGTTTTATTCAGATTTCCTTGAAATCATTTCCGAGA
GTGAGCGCATCAAAGAAGGTGTCAAAATAGAATCACCCAATGTCGAGGTT
TTGAACGATTCAAGCAAAGATGGCGACCTGTACGGGACTGGATATCAGAA
TCCGTCACCACAAGACAGCCAATACGACGAACGATCGTCATCCGAATTAA
ACACACGTCGCGAAGACGAACTAGACGAGCGACGTACTCAGCAATCGGGC
AACGTTAATAACAGTGAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATC
CAGAGAGTGTGAGAACGAGTATCAAACAACGACGTCACCAAATCATCAAC
CGACCGTATCCGAAACGAACGTCACAAACGAGCGAAGGGAAGCCGTCACT
GAGAGCCATCATCATTCCTTACAAAACGGGGATCTCGAGAACGGCCATAG
TAGAATCAACGAACGCTTATCAAATTATTACTCACACCACGATTCTATGT
ATCCGCCCATTTATTCGACCAGCTCTGAACATTACATGCGTaagcataaa
aatattgacGTCAGTATAATGGGGCGTGGGTACCCCAGTGCAAAGCGTGT
TAAACGCGCCATGGATATTTACTCATCACCTGCCCCTGCGCCCTACAAAT
ACGCAAGCCGACACCATCATAGAGGATATCCGCCCACGATGGCCACAATC
GCCAGTAATTCTTACCCATATCACATTAACAACCACTATTCGACAACACC
GCCGCTTATTCGACCCGTATCTACACCAAAAGATACATCCCCGTCTCCCC
GTAATACTGTTTCTAGTACCAATAACGTAGCACCGAGTCTGTCCAATGAT
TCGTCTTATATGAAAGCAGAGCATACGCATATTAATGACGCACCGCCTGC
GCTGAAATCGTCTCCTGGGTACAAGAATAGAGAGATGCACGCACCTAAAG
ACTTAACATTAAGTGAAACTTTGAACTTTTACAATCAACGATTCTTAGAT
ATGCAAGAGAGACAAACTGAATTATTTAGTGAAATGATTTGTCGGCATGA
ACAATTTCTTTCCAGACTTTTAGAACAACAACGAACGGCTGCTGAAGATG
CTCAAAAAAGAGACAAAGAATTCATGTTAAAATTGATAGAAATGTTCGTT
AAGCAATAGTTTCAAACGTTCTCAactttttagtttttacaattttttct
tctgattttcaatttcttctgatagaatttttctttcgtttttttttttc
ttttaaaattttctgctCCAGGTTTTTGAGCAGATTTGTAAATATATTTA
TCTAAATGCGATCTTTAAATTGGGTAATTCTTAATTTTTACAGTTGACTT
GCCTGGTTTTTGATACATTCTTAAAACTGTCAGATCGTTGTGTACGACAG
GGGTTTTATTCAAATCTCCCTTGTCAACAAAAATTCTTTAAGAATTCATC
TTTGAACCCTTAAATGAGGCCGTTGGAAAATTAG Run BLAST on NCBI transcript from alignment at scaffold_71:426415..430693- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072169 ID=TCONS_00072169|Name=TCONS_00072169|organism=Clytia hemisphaerica|type=transcript|length=4279bp|location=Sequence derived from alignment at scaffold_71:426415..430693- (Clytia hemisphaerica)
GTTTTTAAGGAAGTGAGAACATTTTTGTGATAAACATATACCATGGTCTA
CTTGTCTTGATCTAGCTTTCAATTACTTTTATTTTCAATTTCAATTTTCA
ATCTACTTAGTCGAATACTTTTTTCTTATAAATGATGTTTTTTTAAACGT
TACATTGTATATATTGAATGCACTTTTCTCGTTATTTACACGGTAAGGTT
TACTTAATTATTTTCATTATCAAAGGGAGAGGTAATTTTGAGTGTCTTAG
ATTCAAATCTAAATTTAGCAAAGCAGTAAAATACCTAGGCTTGAAGACGG
TATGAGAATTTTCTAAGAATTTCTATCTAGGTCAAACCAAAACAAGCCTT
ATGAAATGAAATAACCTTTCTTATTTACTGCTCGATGCCCAATATGAGAT
GAGTTTTGTTTTCACGCAAATATATGGTCTCTTCGCATTTGAAAGAACTC
GAAAAAATTTCTCTAGCTCTTTTCGTTTTGAACCTACGGCTAAGCGGTTC
TTGAGCACTGAATTTTGGCAATCTTCTGGCTATGAAACTGACAAAGTATG
GCTATTTATATTCCTTTTTACGTCATTACGATAAATCTTATTTAATAATA
TCTAGGGTTTAATTGTTCATAACTGTTGTGCATCTAGGTCTGATTCCTGA
TTGACTACTGTTGATATCTTTGGAAAATGGAAGTTTTGATTTGTGGTTCA
CCAAGTGTTTTTTATCATTACTTTTTAGACTAAGATTCTGCCAATCATAT
TAGTTTTGCCTTTACGATTTACTGTAGTTGTTCGTTGTTCGTTGTTTTTA
CTTAATATGTAATAGTCGTATGCAATGCATAGCATAAAATGCTTGTTCCT
ATTCCTAACTCATCAAACTCTTGATAAGTTTAGCATGTGTAAAAAAGTCT
CAATCTGTAGTGAGACATTGTCACAATGGGCTCTTCCAGAAAATGTCCGT
ACATGGGGGGGGATAGAGGATATATTGTCCAGGGGTAATTTGGGTTGTCC
GAAGGGTCAACCGATGCTTGTCCGGGGGTTAAACCTGTTGTCCGGGGGGG
GGGGGCAAAAAATCACTTTGTCCGGGGGGTAAATCACTGATAATTGTTAT
ATCCTCCACCCCTCATATTCAAATTTTTTCTGGAAAAGCCCAATGTCAAT
GCCTGTCGATTATCAAGATCATCTGTTCATCATGCCAAAATAGTAAAAAA
TATGTAGCCCAAATCAGACATCACGCCTTAATTCCTTACCTACCAGGTGT
TAGGGTCTTAGTAAATGTATATACAGTTGACTCTCTAATTCGATATTCAA
GGGACTAAAAATGTTCATTGAATCATAGAAAGACTCGAAACAAAAAGTGT
TTCATATATTAATCTCTAACTGAGGGGACAAATATTTTAGTTCGAATATT
AGAGGTTTACTGTAAAGTTGACTGTACTTACTAATTGGCACAGAGAATAA
CTTTCAAACAGTACACACTTTTTTGTAAGAATATACTTTATAAGAATATT
AATGGAAAGACAAATTTTTGCCTGAGGTATGTATCACATGCTAGATTTTG
GCTGTGATTGAATCCAAACCTGAGAATACCCTAAGAATATTGATTTTCCG
CAAAAAGCTAAAAAAAAATCATAATGAATTGAAAGAACACCATTCTTATA
AACAAACGTGTATTTTATGCCAAAATATTAATTAACAAATATATTATCTT
GAACTAATCTCTCCTATTCTTCTTTTTATTTTTTCAGGCAAACTATAAGA
GAGGGTCTTCGATTCTCAGAAATGAGTCAACATTCAATGATTACTGAACA
AGCAATCAACCCTTACCTTTCATCGCGTGGAACTTCAAATCATATGATTC
AGTCTATGGCCCTTGGTAACCATCTGACTGACAATAATAATTCAAGCAAT
AATAATTACTTCAGTGAAATACAAATGGATGACGGGAAATGGACCCGACA
TCAAACACAGATCTTAATTGACACCTGGAAAGAGCATAAAGATATCTTAT
TAAGTACTGGATCAAGCTCAGCTGAACATTTTCGTGTCTGGAAACTCATT
GCGACTGAAGTTAACAAATTCGCACCACCCAAGAGTCTCCAGCAATGCAA
GAAGAAGTTCCGTAATATACGATACATTTGTAAAATGGCCATGAATAATA
ACAAACAAGAGGGCGGTAAGAAACATTATCCAATGTTTTATTCAGATTTC
CTTGAAATCATTTCCGAGAGTGAGCGCATCAAAGAAGGTGTCAAAATAGA
ATCACCCAATGTCGAGGTTTTGAACGATTCAAGCAAAGATGGCGACCTGT
ACGGGACTGGATATCAGAATCCGTCACCACAAGACAGCCAATACGACGAA
CGATCGTCATCCGAATTAAACACACGTCGCGAAGACGAACTAGACGAGCG
ACGTACTCAGCAATCGGGTAACGTTAATAACAGTGAAGGTTCTGGAAGCT
TTAACGGAAGTCCTCAATCCAGAGAGTGTGAGAACGAGTATCAAACAACG
ACGTCACCAAATCATCAACCGACCGTATCCGAAACGAACGTCACAAACGA
GCGAAGGGAAACCGCCACTGAAAGCCATCATCATTCCTTACAAAACGGGG
ATCTCGAGAACGGCCATAGTAGAATCAACGAACGCTTATCAAATTATTAC
TCACACCACGATTCTATGTATCCGCCCATTTATTCGACCAGCTCTNCGCA
CCACCCAAGAGTCTCCAGCAATGCAAGAAGAAGTTTCGTAATATACGATA
CATTTGTAAAATGGCCATGAATAATAACAAACAAGAGGGCGGTAAGAAAC
ATTATCCAATGTTTTATTCAGATTTCCTTGAAATCATTTCCGAGAGTGAG
CGCATCAAAGAAGGTGTCAAAATAGAATCACCCAATGTCGAGGTTTTGAA
CGATTCAAGCAAAGATGGCGACCTGTACGGGACTGGATATCAGAATCCGT
CACCACAAGACAGCCAATACGACGAACGATCGTCATCCGAATTAAACACA
CGTCGCGAAGACGAACTAGACGAGCGACGTACTCAGCAATCGGGCAACGT
TAATAACAGTGAAGGTTCTGGAAGCTTTAACGGAAGTCCTCAATCCAGAG
AGTGTGAGAACGAGTATCAAACAACGACGTCACCAAATCATCAACCGACC
GTATCCGAAACGAACGTCACAAACGAGCGAAGGGAAGCCGTCACTGAGAG
CCATCATCATTCCTTACAAAACGGGGATCTCGAGAACGGCCATAGTAGAA
TCAACGAACGCTTATCAAATTATTACTCACACCACGATTCTATGTATCCG
CCCATTTATTCGACCAGCTCTGAACATTACATGCGTAAGCATAAAAATAT
TGACGTCAGTATAATGGGGCGTGGGTACCCCAGTGCAAAGCGTGTTAAAC
GCGCCATGGATATTTACTCATCACCTGCCCCTGCGCCCTACAAATACGCA
AGCCGACACCATCATAGAGGATATCCGCCCACGATGGCCACAATCGCCAG
TAATTCTTACCCATATCACATTAACAACCACTATTCGACAACACCGCCGC
TTATTCGACCCGTATCTACACCAAAAGATACATCCCCGTCTCCCCGTAAT
ACTGTTTCTAGTACCAATAACGTAGCACCGAGTCTGTCCAATGATTCGTC
TTATATGAAAGCAGAGCATACGCATATTAATGACGCACCGCCTGCGCTGA
AATCGTCTCCTGGGTACAAGAATAGAGAGATGCACGCACCTAAAGACTTA
ACATTAAGTGAAACTTTGAACTTTTACAATCAACGATTCTTAGATATGCA
AGAGAGACAAACTGAATTATTTAGTGAAATGATTTGTCGGCATGAACAAT
TTCTTTCCAGACTTTTAGAACAACAACGAACGGCTGCTGAAGATGCTCAA
AAAAGAGACAAAGAATTCATGTTAAAATTGATAGAAATGTTCGTTAAGCA
ATAGTTTCAAACGTTCTCAACTTTTTAGTTTTTACAATTTTTTCTTCTGA
TTTTCAATTTCTTCTGATAGAATTTTTCTTTCGTTTTTTTTTTTCTTTTA
AAATTTTCTGCTCCAGGTTTTTGAGCAGATTTGTAAATATATTTATCTAA
ATGCGATCTTTAAATTGGGTAATTCTTAATTTTTACAGTTGACTTGCCTG
GTTTTTGATACATTCTTAAAACTGTCAGATCGTTGTGTACGACAGGGGTT
TTATTCAAATCTCCCTTGTCAACAAAAATTCTTTAAGAATTCATCTTTGA
ACCCTTAAATGAGGCCGTTGGAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00072169-exon-scaffold_71-1575043694:430502..430693 | TCONS_00072169-exon-scaffold_71-1575043694:430502..430693 | Clytia hemisphaerica | exon |
| TCONS_00072169-exon-scaffold_71-1575043694:426415..428956 | TCONS_00072169-exon-scaffold_71-1575043694:426415..428956 | Clytia hemisphaerica | exon |
| TCONS_00072169-exon-scaffold_71-1510915933:430502..430693 | TCONS_00072169-exon-scaffold_71-1510915933:430502..430693 | Clytia hemisphaerica | exon |
| TCONS_00072169-exon-scaffold_71-1510915933:426415..428956 | TCONS_00072169-exon-scaffold_71-1510915933:426415..428956 | Clytia hemisphaerica | exon |
| TCONS_00072169-exon-scaffold_71-1491911889:430502..430693 | TCONS_00072169-exon-scaffold_71-1491911889:430502..430693 | Clytia hemisphaerica | exon |
| TCONS_00072169-exon-scaffold_71-1491911889:426415..428956 | TCONS_00072169-exon-scaffold_71-1491911889:426415..428956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_71 | supercontig | scaffold_71:426415..430693 - |
Blast
The following BLAST results are available for this feature:
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