TCONS_00072122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072122
Unique NameTCONS_00072122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072122 ID=TCONS_00072122|Name=TCONS_00072122|organism=Clytia hemisphaerica|type=transcript|length=640bp
aaatcagagAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTGA
ACTATCAAAACTTAAAGAAGAACGCAATCAAATTGAGACCCGAACATTGT
TCCAATCAAAAGAGACTAATGAGCATCCagtgaaaaaagaaaagcaagca
ACAGAAAATGATTATACAAAGGCCAAACAGAATGGTTCAAATGCACAAGT
TAAGAATGAAAACACATTCAACATCCAAGTGTCTGATGAAAAGACAAATC
TAAgtgAGAAAACTAGCAGTGAATCTAGTGGACAATTATCAGATGGTAGA
AACaacactgaaaatgaaaaaggcAAGAGGGAGCAAAATGAAGCCAAGGT
AAACCAATCCAAGGAGAAACCGACCAAAGAAAAGGattccaaagaaaaag
aagaacaaaaagagaaaaaacaagATAATCAAGCAGGAGGAAAAGAGCAA
TCAAAAAAACAAGATCCACTCACCAAAGATCAAAATGGTGTAAAAGAAGG
AGTGACAACTAGAAGTATGGCAAATAAAACAGAATCAAATTCATCTGCGC
CACCAAGTTATGCAAAAGCGACTGCAAGCTCAGCAGCTAAAAAGAATGGT
GCCAATGATCAGAACCAAAAGGCTCAAGCTAATGTGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_71:635786..639973+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072122 ID=TCONS_00072122|Name=TCONS_00072122|organism=Clytia hemisphaerica|type=transcript|length=4188bp|location=Sequence derived from alignment at scaffold_71:635786..639973+ (Clytia hemisphaerica)
aaatcagagAACGACTCTAAAACCTTGCTTCAGACTGCTGAAGAATCTGA
ACTATCAAAGTAAGAActacattttttgtttacttataCCGATTTTATGA
ATATTGCACCAATAACACCATCAGCAGTTGCAGTATGGTTATTCAGAAAT
TATTGCTAATTCTGAATGAAAATTGTGTCATCACAAGCgacttcaaattc
aaaatggaaCGCTCCAATGAAACGTTCATTGAATCTAGTTTAAGAACCTA
TGCATTTACACTTTTATATATCTATCTCAGTTATTAGTTCGTtgagcctc
aagttccttataaacgtgttctttataaaaaaacgtgtattacacTAATA
ACACCATCAGTAGTTGCAGTAGGGTTATTCAGAAATTATTGCTAATTCTG
AATGAAAATTGTGTCATCACAAGCgacttcaaattcaaaatggaaTGCTC
CAATGAATCGTTCATTGAATCTAGCTTTAAAGAACCTATGCATTTCCACT
TTTAAGTATATATCTATCTCAGTTATAAATTAGTTTGTTGTGGGATATAC
CAATTTTATTGCATATAGATTTATATCATTCAATCTTAGCACCCAAGGTA
TCAGTGAAAACACTAAAGTTGATAATCAGCACATTGATAACGATACAGAA
ATGGCTGAAGAGAAGCCTAGTGAGGAAGGACAAAACAGCAAAATTGTTGG
CAAGGAAGAAAACAAATCAGAGAACGACTCTAAAACCTTGCTTCAGACTG
CTGAAGAATCTGAACTATCAAAGTAAGAActacattttttgtttactcag
tTAATACTATAAAACATTCTAGAACGTTCTCATTTACGTTCTCATCagta
tacattttttatttactaaTACTAATTTTATGAGTATTACACCAATAACA
CCATCAGTAGTTACAATATGGTTATTCAGAAATTATTGctaatttttgaa
tgaaaattgtgtCATCACAAGCAACCTTCAATACAAAACGGAACGTTCCA
ATGAATTGGTCATTAAATTATTCaatcattctattttatttactAGTTTA
AGAACGTTACTGAacattcaaaatgtttttcagACGTTCTTATCAAGTTG
AATTCAACCTTTGAACGCTAAGGATTGTTCTGGAGTGGAATGTTTGAGAA
CAACTGAAAACGTTCTGGAACATCCAGGAaagctatgggatgggtttgcA
AACTTTCAGAATGTTCCATTTCATTTGTACTTTAAATCTTTTGTGATGAC
ACAATTGTCCTTAACTCGATGAATATAGCTGTGATATACCATTGTTTCTA
GCCTCTTATTTATGTACTTTATTGGTAGACTTAAAGAAGAACGAAATCAA
ATTGAGACCCCNAacgctatgggatgggtttgcAAACTTTCAGAATGTTC
CATTTCATTTGTACTTTAAATCTTTTGTGATGACACAATTGTCCTTAACT
CGATGAATATAACTGTGATATACCATTGTTTCTAGCCTCTTATTTATGTA
CTTTATTGGTAGACTTAAAGAAGAACGCAATCAAATTGAGACCCGAACAT
TGTTCCAATCAAAAGAGACTAATGAGCATCCagtgaaaaaagaaaagcaa
gcaACAGAAAATGATTATACAAAGGCCAAACAGAATGGTTCAAATGCACA
AGTTAAGAATGAAAACACATTCAACATCCAAGTGTCTGATGAAAAGACAA
ATCTAAggtattttgaaatttgcctGGCTTTTGTCTGCCCAAACGGTTGC
CCCTAAACTTGAGACTTCACAAAACAGGACACAAAGAAATCCTTaaattt
gcaaataaaaatttacaattttaaaacaattaaaTTCTCCTCTGTTTTGT
TAAGTTTTGTTATTCAATCACTTGTTATGGCTTGTTTGTTGTGCAggatt
aattttatttttaacttttagtgAGAAAACTAGCAGTGAATCTAGTGGAC
AATTATCAGATGGTAGAAACaacactgaaaatgaaaaaggcAAGAGGGAG
CAAAATGAAGCCAAGTGAGAGATCTTTACACTATCCAAAGTTATTtagct
tttttctttattgaactAATTGTAAGATGTTAAGATATACACCTGACACA
CACTACACTTTTggttacttttttaaatttctattttataatttttattc
ttCAGATATTTTATTGGACAATGTTCAAAGAATAGGATTATTCCCACTAA
GTAACTAAAAATCATTTTCAGGATTATATGGATCCAATAATTAATTAATA
TCTCGTACATCAAGGGTAAACCAATCCAAGGAGAAACCGACCAAAGAAAA
GGattccaaagaaaaagaagaacaaaaagagaaaaaacaagATAATCAAG
CGTAAGTATTTTTGCCTGATAAAAAGGACAATTCTTTTTGATTAATTACA
TCCATTTGGATTTTAATTAAGGagttttatatttaaaaatgtGAGAAAAG
TGAGAAAAGAATGATGTAAAGGAGCTTTCTGTGTCAGAAACTAGTTTTTA
CCTTTTTGGGTATCTATTGAAATTGGACGATGGTGTTGGACAATGATTGA
GAGATCATCTGACAGTGTGTGTGGTTCATACGcttcttttctattttaat
ttCACTACTAGGTCTGAAAACATCAATTGTGGACAcagttgatgtttttt
atccacagtcgatcatttttatggacagtttttttctttttcttgacaGT
TGATGCCTGGAAATAGACAGCCAATACTTTTCATGAACTGTCAAGATTTA
ATTGACTGCCAATGTCTGATATCGACTGTCGATTAGCTGATATTGACTGC
CAATATCTTACCTTGACTGTCATTCAAGATCAGCTATTAACATTCAAATC
TTTTTAAAGGTAATTAATATTGATTAATTAATGTAATATTATGATCATTT
CTTTTCAGAGGAGGAAAAGAGCAATCAAAAAAACAAGATCCACTCACCAA
AGATCAAAATGGTGTAAAAGAAGGGTAGgaagttatgaaaaaaataaaac
ttttaaaagttttagtGAAATACCCTTAAGAAGGTTATTAGATGTAAGCT
GATAATTTGTGATTtcccaagcgatttaaagtacctgaaaatcagaCCGG
TCTTGGTCCTGTATTACGAGCAGTCTAGTAGcagtcaaatttttgtttta
gatcgGCCTTCAGACCTTCTAGAAATTTGATCTCTAATGGTCCTGGCCGC
TTCTAGACGCTCATGACTGCTCGTTAGACTGGTCCAGACAGCTAGTTAGT
GATTTTTAGTAACAATCACATCAAAAAAATCTTGTAAGAGGATGTCAAAT
GGACAATCGAGGCCGGTCTGGGATCGGACGCTTCGCAGGGGCAGCTAAAT
TAACTAGACTCGAAGCGgccttttggtaaattttaCAGTCATTTACCAGC
CCTTAAAAGACCGCCTAAAGACCGGTcccattttcaggtacttttaaatc
gctttaggagTCACATCCTTTTCTGATTTGATTAGAGTGACAACTAGAAG
TATGGCAAATAAAACAGAATCAAATTCATCTGCGCCACCAAGTTATGCAA
AAGCGACTGCAAGCTCAGCAGCTAAAAAGAATGGGTTTGTCATTTATCTT
TCTAACAGCCATACTACTATACTTATTTTGGTGGTAcctattttttgtat
tttagccGACTACATTGTAAATAAGTTACCAAAAAAAACTGGCCTTCATT
TGACCTGTGCTGGTTGTTCTAACTTTGACTGGTCATGGTTGTTTGTTAGC
TTTTCTAGTAACAATTACTTAAGAAATTGTTTAAAAGGATGTCAATCGGT
CAATCAAGGCCATTCTGGGACAAGTCCAATTCTTGGAAAAGGTCCTGCGA
AATGACTGCTAAATTAATTGAACTCATAGCAGCCTTTCGAAgtgttttca
ataaatttttacCAGTCATTTACTAGCCCCTAGAGTAGATTGTCCTTAGA
ATCACTTGGGTGTGACATATGataaaaataatgtcaaaaaaataaagacc
tatacagaaaatgaaaaatttatataATTTCAAGTATTTACTAAGGTTAG
AGTTTATTTGTCTCCTTTAACACCTGTTAACACTTAAAACTGGAATACAA
ACTCACTCACATTCTTTGCTTAACTGATtgtgaaatttaatttatagTGC
CAATGATCAGAACCAAAAGGCTCAAGCTAATGTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044791XLOC_044791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072122-exon-scaffold_71-1491911889:635786..635844TCONS_00072122-exon-scaffold_71-1491911889:635786..635844Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:635786..635844TCONS_00072122-exon-scaffold_71-1510915933:635786..635844Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:635786..635844TCONS_00072122-exon-scaffold_71-1575043694:635786..635844Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:637298..637492TCONS_00072122-exon-scaffold_71-1491911889:637298..637492Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:637298..637492TCONS_00072122-exon-scaffold_71-1510915933:637298..637492Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:637298..637492TCONS_00072122-exon-scaffold_71-1575043694:637298..637492Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:637707..637799TCONS_00072122-exon-scaffold_71-1491911889:637707..637799Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:637707..637799TCONS_00072122-exon-scaffold_71-1510915933:637707..637799Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:637707..637799TCONS_00072122-exon-scaffold_71-1575043694:637707..637799Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:638050..638136TCONS_00072122-exon-scaffold_71-1491911889:638050..638136Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:638050..638136TCONS_00072122-exon-scaffold_71-1510915933:638050..638136Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:638050..638136TCONS_00072122-exon-scaffold_71-1575043694:638050..638136Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:638694..638759TCONS_00072122-exon-scaffold_71-1491911889:638694..638759Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:638694..638759TCONS_00072122-exon-scaffold_71-1510915933:638694..638759Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:638694..638759TCONS_00072122-exon-scaffold_71-1575043694:638694..638759Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:639271..639369TCONS_00072122-exon-scaffold_71-1491911889:639271..639369Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:639271..639369TCONS_00072122-exon-scaffold_71-1510915933:639271..639369Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:639271..639369TCONS_00072122-exon-scaffold_71-1575043694:639271..639369Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1491911889:639933..639973TCONS_00072122-exon-scaffold_71-1491911889:639933..639973Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1510915933:639933..639973TCONS_00072122-exon-scaffold_71-1510915933:639933..639973Clytia hemisphaericaexon
TCONS_00072122-exon-scaffold_71-1575043694:639933..639973TCONS_00072122-exon-scaffold_71-1575043694:639933..639973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:635786..639973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0748055	0	0.223289	1.01555	0.991346	0.315188	0.952259	0	2.89795	0.1546	0.163791	1.26527	2.47956	0	0	0	0.0907997	0	1.5195e-05	0.151767	0.842906	0.513765	0.269999	10.8424	12.7669	0.745726	0	0.993892	0.609317
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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