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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072139 ID=TCONS_00072139|Name=TCONS_00072139|organism=Clytia hemisphaerica|type=transcript|length=1431bp
ggCTGTCCATGGAAAAGAACGAGGAGTACCAAGCATGGAAAAAAGAGAGG
AAGATTTTTCGCTGGGTTGCAACAATAGCTATCCTCTTTTACGGGTTGGA
ATCTCAACTAACCACGTTATCGATAGTATATTATATGATGGATAGATACC
ATATCACCAAAGATCAAGTATCGGTGTACTACAGTATTGCCCAGTCTCTT
TTCGCTGGCGTTCAAATGTTCTCTTCGTTGGTATTAGGGCGGTATGTAGA
CCACACAAGAAATATAAGGAAGATTCTGATCATTGTAATGGCAATCTCCA
GTCTTTGCAACTTGGTGTATACACTACCTCTACCTATTTGGATTGTGGTG
GGAACTAGAAGCTTGATGGGTGTCACTGAATGTCTGCAGTCCGCTGTTTT
AGgGGAGTTACGAAGAGTGTACAACGAGGACAAGGAGGAATTGATTAGTG
TACTTAATTGGTATGAAATCTCATGTCAAATCGGCCGAAACTTCGGCGGA
ATCCTACTATTGTGTGCCAGTCTCGTTTCCTTTTATATTGGACAATGGAA
ACTTGATCGTTTGAATTTCAACAACCTGCTTCTTTCGATGGCTTGTTTCA
CACTATTCTTATTCTCAATATTCAAAGTGAAAAATGCTTCAAGACGTTTG
GATGAGATTAGGTCCAAATACAGAGTCGTTGGAAAGAAAAGAGCAAGCTC
AACCGAACAAAAACCTCTGATGGAATGGTACGATTTTGTTCAATTTGATA
TTGTTCTGATGTTAGTTGCAACAAGCATTTTGCGTTACGTAACGATGGCA
ACCATCGCTTACACCACTCTCCTGACAACCACGGTATACGCATGGAAAGC
TAATAATCTGTTTGCAATGTTCTTTGTCACCAATATAATAGCAATGGTTT
CACTTACTCTACTTGCCAAATGGGACGTTGTGAAGGGTGCCAAAAGAGCC
TTCTATCTTTTCATACTGGCTTTAGTGGCTGGAGCAGTCCTTCTGATATC
CTTTATGTTGACCAAAGCTGGTCTCTTGGATACATTCACAAAACAATTGA
TCTTTTTTGGAATGATGAAAATTGGTAAAAGTATTTGTTTGTATTTCACG
AACACATCTGGCAGTTTTCTGTTATTCAGTTTGGTATCCCCTGAAAACAG
CAGCTCCATAGCTGGGTTTAAGTCATTCTTCAACGTTTCCATGAAGTGTT
TATCATATTTGACAGCCTTCAAGGCGGCTTATTTACCCGAGTACGCGTCA
CCACCTGTagccatatttatttttatttgtgcTTACATGTTGTTATATCG
AAGAGGAAATTTTCTTAAATGATGAAATTTGTTTATGATGTATATATATA
CAACGTCAAGCCTTTTATTTTAGATAGTTTTTTTATAGAAcaatgaaaag
taaatattgaTTTTATTATTCTTATTCGTGC Run BLAST on NCBI protein sequence of TCONS_00072139-protein >TCONS_00072139-protein ID=TCONS_00072139-protein|Name=TCONS_00072139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
LSMEKNEEYQAWKKERKIFRWVATIAILFYGLESQLTTLSIVYYMMDRYH
ITKDQVSVYYSIAQSLFAGVQMFSSLVLGRYVDHTRNIRKILIIVMAISS
LCNLVYTLPLPIWIVVGTRSLMGVTECLQSAVLGELRRVYNEDKEELISV
LNWYEISCQIGRNFGGILLLCASLVSFYIGQWKLDRLNFNNLLLSMACFT
LFLFSIFKVKNASRRLDEIRSKYRVVGKKRASSTEQKPLMEWYDFVQFDI
VLMLVATSILRYVTMATIAYTTLLTTTVYAWKANNLFAMFFVTNIIAMVS
LTLLAKWDVVKGAKRAFYLFILALVAGAVLLISFMLTKAGLLDTFTKQLI
FFGMMKIGKSICLYFTNTSGSFLLFSLVSPENSSSIAGFKSFFNVSMKCL
SYLTAFKAAYLPEYASPPVAIFIFICAYMLLYRRGNFLK Run BLAST on NCBI transcript from alignment at scaffold_71:1072607..1074858+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072139 ID=TCONS_00072139|Name=TCONS_00072139|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at scaffold_71:1072607..1074858+ (Clytia hemisphaerica)
ggCTGTCCATGGAAAAGAACGAGGAGTACCAAGCATGGAAAAAAGAGAGG
AAGATTTTTCGCTGGGTTGCAACAATAGCTATCCTCTTTTACGGGTTGGA
ATCTCAACTAACCACGTTATCGATAGTATATTATATGATGGATAGATACC
ATATCACCAAAGATCAAGTATCGGTGTACTACAGTATTGCCCAGTCTCTT
TTCGCTGGCGTTCAAATGTTCTCTTCGTTGGTATTAGGGCGGTATGTAGA
CCACACAAGAAATATAAGGAAGATTCTGATCATTGTAATGGCAATCTCCA
GTCTTTGCAACTTGGTGTATACACTACCTCTACCTATTTGGATTGTGGTG
GGAACTAGAAGCTTGATGGGTGTCACTGAATGTCTGCAGTCCGCTGTTTT
AGGTGTGTACGAGGCCTTGGGTACACGTTTTTAAGGTATATAGAGTAGAC
GTTCTCAttacagatttataaagcccgaagggctagatgtcgtgctttgg
ctgaaaagtgtgccgaagTTAGGTAGTAAATCCTACCTGGGTCACGtaac
attacaatagaatttcagcacttgaccaatgagaagcttcgcaggttttc
gaaaacgatagcagcaatattttttgcgatattcacttttttgcatggaa
gagcttaaagcacgacatctaaaCAGAAATCTGTGGTTCTCATGTCATGC
ATCTGATGTTCTTAAATGTTCTATATCCTGTCTACAAAGTTCACAAGATT
CttgttgaacacatttcaactttatCCAACCGTTAAAGCCGGTCTCCACt
ctcgcgcgacatgagcgaaaactttttgacgtttttgtaaggtcattggt
cggttgaaaaatgaagcaattccattggtcgaaattgacgtaactgatga
aaaaagtaaaacttccttcacttttttttgttcgcgcgaaacttttttat
gacgtaatcttttcttcaggcaaaaaaggtaaagaaaaaaactgtcgccc
atttcgcgcgaaagtggagaccgccctttacgtcagatcgcatcaatgga
gttgcttcatttttcttttgaccaatagcgtggaagctttgttcgaaaaa
gtgcgatcgcagcgcgcacaagtggagaccggccttaaaatAGCGTAGTA
TATCTgcggcaatgaattttaaaattttcagagatgcAACAGAGTAAAAA
TTgtgataaatttttcatttcaggGGAGTTACGAAGAGTGTACAACGAGG
ACAAGGAGGAATTGATTAGTGTACTTAATTGGTATGAAATCTCATGTCAA
ATCGGCCGAAACTTCGGCGGAATCCTACTATTGTGTGCCAGTCTCGTTTC
CTTTTATATTGGACAATGGAAACTTGATCGTTTGAATTTCAACAACCTGC
TTCTTTCGATGGCTTGTTTCACACTATTCTTATTCTCAATATTCAAAGTG
AAAAATGCTTCAAGACGTTTGGATGAGATTAGGTCCAAATACAGAGTCGT
TGGAAAGAAAAGAGCAAGCTCAACCGAACAAAAACCTCTGATGGAATGGT
ACGATTTTGTTCAATTTGATATTGTTCTGATGTTAGTTGCAACAAGCATT
TTGCGTTACGTAACGATGGCAACCATCGCTTACACCACTCTCCTGACAAC
CACGGTATACGCATGGAAAGCTAATAATCTGTTTGCAATGTTCTTTGTCA
CCAATATAATAGCAATGGTTTCACTTACTCTACTTGCCAAATGGGACGTT
GTGAAGGGTGCCAAAAGAGCCTTCTATCTTTTCATACTGGCTTTAGTGGC
TGGAGCAGTCCTTCTGATATCCTTTATGTTGACCAAAGCTGGTCTCTTGG
ATACATTCACAAAACAATTGATCTTTTTTGGAATGATGAAAATTGGTAAA
AGTATTTGTTTGTATTTCACGAACACATCTGGCAGTTTTCTGTTATTCAG
TTTGGTATCCCCTGAAAACAGCAGCTCCATAGCTGGGTTTAAGTCATTCT
TCAACGTTTCCATGAAGTGTTTATCATATTTGACAGCCTTCAAGGCGGCT
TATTTACCCGAGTACGCGTCACCACCTGTagccatatttatttttatttg
tgcTTACATGTTGTTATATCGAAGAGGAAATTTTCTTAAATGATGAAATT
TGTTTATGATGTATATATATACAACGTCAAGCCTTTTATTTTAGATAGTT
TTTTTATAGAAcaatgaaaagtaaatattgaTTTTATTATTCTTATTCGT
GC Coding sequence (CDS) from alignment at scaffold_71:1072607..1074858+ >TCONS_00072139 ID=TCONS_00072139|Name=TCONS_00072139|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_71:1072607..1074858+ (Clytia hemisphaerica)
CTGTCCATGGAAAAGAACGAGGAGTACCAAGCATGGAAAAAAGAGAGGAA
GATTTTTCGCTGGGTTGCAACAATAGCTATCCTCTTTTACGGGTTGGAAT
CTCAACTAACCACGTTATCGATAGTATATTATATGATGGATAGATACCAT
ATCACCAAAGATCAAGTATCGGTGTACTACAGTATTGCCCAGTCTCTTTT
CGCTGGCGTTCAAATGTTCTCTTCGTTGGTATTAGGGCGGTATGTAGACC
ACACAAGAAATATAAGGAAGATTCTGATCATTGTAATGGCAATCTCCAGT
CTTTGCAACTTGGTGTATACACTACCTCTACCTATTTGGATTGTGGTGGG
AACTAGAAGCTTGATGGGTGTCACTGAATGTCTGCAGTCCGCTGTTTTAG
gGGAGTTACGAAGAGTGTACAACGAGGACAAGGAGGAATTGATTAGTGTA
CTTAATTGGTATGAAATCTCATGTCAAATCGGCCGAAACTTCGGCGGAAT
CCTACTATTGTGTGCCAGTCTCGTTTCCTTTTATATTGGACAATGGAAAC
TTGATCGTTTGAATTTCAACAACCTGCTTCTTTCGATGGCTTGTTTCACA
CTATTCTTATTCTCAATATTCAAAGTGAAAAATGCTTCAAGACGTTTGGA
TGAGATTAGGTCCAAATACAGAGTCGTTGGAAAGAAAAGAGCAAGCTCAA
CCGAACAAAAACCTCTGATGGAATGGTACGATTTTGTTCAATTTGATATT
GTTCTGATGTTAGTTGCAACAAGCATTTTGCGTTACGTAACGATGGCAAC
CATCGCTTACACCACTCTCCTGACAACCACGGTATACGCATGGAAAGCTA
ATAATCTGTTTGCAATGTTCTTTGTCACCAATATAATAGCAATGGTTTCA
CTTACTCTACTTGCCAAATGGGACGTTGTGAAGGGTGCCAAAAGAGCCTT
CTATCTTTTCATACTGGCTTTAGTGGCTGGAGCAGTCCTTCTGATATCCT
TTATGTTGACCAAAGCTGGTCTCTTGGATACATTCACAAAACAATTGATC
TTTTTTGGAATGATGAAAATTGGTAAAAGTATTTGTTTGTATTTCACGAA
CACATCTGGCAGTTTTCTGTTATTCAGTTTGGTATCCCCTGAAAACAGCA
GCTCCATAGCTGGGTTTAAGTCATTCTTCAACGTTTCCATGAAGTGTTTA
TCATATTTGACAGCCTTCAAGGCGGCTTATTTACCCGAGTACGCGTCACC
ACCTGTagccatatttatttttatttgtgcTTACATGTTGTTATATCGAA
GAGGAAATTTTCTTAAATGACTGTCCATGGAAAAGAACGAGGAGTACCAA
GCATGGAAAAAAGAGAGGAAGATTTTTCGCTGGGTTGCAACAATAGCTAT
CCTCTTTTACGGGTTGGAATCTCAACTAACCACGTTATCGATAGTATATT
ATATGATGGATAGATACCATATCACCAAAGATCAAGTATCGGTGTACTAC
AGTATTGCCCAGTCTCTTTTCGCTGGCGTTCAAATGTTCTCTTCGTTGGT
ATTAGGGCGGTATGTAGACCACACAAGAAATATAAGGAAGATTCTGATCA
TTGTAATGGCAATCTCCAGTCTTTGCAACTTGGTGTATACACTACCTCTA
CCTATTTGGATTGTGGTGGGAACTAGAAGCTTGATGGGTGTCACTGAATG
TCTGCAGTCCGCTGTTTTAGgGGAGTTACGAAGAGTGTACAACGAGGACA
AGGAGGAATTGATTAGTGTACTTAATTGGTATGAAATCTCATGTCAAATC
GGCCGAAACTTCGGCGGAATCCTACTATTGTGTGCCAGTCTCGTTTCCTT
TTATATTGGACAATGGAAACTTGATCGTTTGAATTTCAACAACCTGCTTC
TTTCGATGGCTTGTTTCACACTATTCTTATTCTCAATATTCAAAGTGAAA
AATGCTTCAAGACGTTTGGATGAGATTAGGTCCAAATACAGAGTCGTTGG
AAAGAAAAGAGCAAGCTCAACCGAACAAAAACCTCTGATGGAATGGTACG
ATTTTGTTCAATTTGATATTGTTCTGATGTTAGTTGCAACAAGCATTTTG
CGTTACGTAACGATGGCAACCATCGCTTACACCACTCTCCTGACAACCAC
GGTATACGCATGGAAAGCTAATAATCTGTTTGCAATGTTCTTTGTCACCA
ATATAATAGCAATGGTTTCACTTACTCTACTTGCCAAATGGGACGTTGTG
AAGGGTGCCAAAAGAGCCTTCTATCTTTTCATACTGGCTTTAGTGGCTGG
AGCAGTCCTTCTGATATCCTTTATGTTGACCAAAGCTGGTCTCTTGGATA
CATTCACAAAACAATTGATCTTTTTTGGAATGATGAAAATTGGTAAAAGT
ATTTGTTTGTATTTCACGAACACATCTGGCAGTTTTCTGTTATTCAGTTT
GGTATCCCCTGAAAACAGCAGCTCCATAGCTGGGTTTAAGTCATTCTTCA
ACGTTTCCATGAAGTGTTTATCATATTTGACAGCCTTCAAGGCGGCTTAT
TTACCCGAGTACGCGTCACCACCTGTagccatatttatttttatttgtgc
TTACATGTTGTTATATCGAAGAGGAAATTTTCTTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072139-exon-scaffold_71-1491911889:1072607..1073008 | TCONS_00072139-exon-scaffold_71-1491911889:1072607..1073008 | Clytia hemisphaerica | exon |
| TCONS_00072139-exon-scaffold_71-1510915933:1072607..1073008 | TCONS_00072139-exon-scaffold_71-1510915933:1072607..1073008 | Clytia hemisphaerica | exon |
| TCONS_00072139-exon-scaffold_71-1575043694:1072607..1073008 | TCONS_00072139-exon-scaffold_71-1575043694:1072607..1073008 | Clytia hemisphaerica | exon |
| TCONS_00072139-exon-scaffold_71-1491911889:1073830..1074858 | TCONS_00072139-exon-scaffold_71-1491911889:1073830..1074858 | Clytia hemisphaerica | exon |
| TCONS_00072139-exon-scaffold_71-1510915933:1073830..1074858 | TCONS_00072139-exon-scaffold_71-1510915933:1073830..1074858 | Clytia hemisphaerica | exon |
| TCONS_00072139-exon-scaffold_71-1575043694:1073830..1074858 | TCONS_00072139-exon-scaffold_71-1575043694:1073830..1074858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_71 | supercontig | scaffold_71:1072607..1074858 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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