Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072365 ID=TCONS_00072365|Name=TCONS_00072365|organism=Clytia hemisphaerica|type=transcript|length=1266bpRun BLAST on NCBI transcript from alignment at scaffold_77:283500..292284+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072365 ID=TCONS_00072365|Name=TCONS_00072365|organism=Clytia hemisphaerica|type=transcript|length=8785bp|location=Sequence derived from alignment at scaffold_77:283500..292284+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00072365 vs. Swiss-Prot (Human)
Match: MVP (Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4) HSP 1 Score: 179.489 bits (454), Expect = 5.305e-49 Identity = 117/265 (44.15%), Postives = 176/265 (66.42%), Query Frame = 3 Query: 6 STRIVKEAVFGVDEED----------NVRNALLFSENNMTVTNIDVQSIEPVDTQMRDSLLKSVQMAIEISTQSIERAASHEARRHEQTAKGNLEKNKLQNEKAAESARMNLYELRAETAAVESSGXXXXXXXXXXXXTLIEGHMAIEAANLKAKALEIEENSKMEILEQQRKAEIEYMKTVNGLEIKKAKQMADIELKKSADLINAIGQDTITNIALAGPKAKVGLLGALGIRATLITDGKTPVNLYQAPNGAI------TPLG 752 S RI++ AVFG + + R+ +F +N + V+++DVQS+EPVD + RD+L +SVQ+AIEI+T S E AA HEA+R EQ A+G LE+ K+ ++ AE AR L EL A + AVES+G AKAEAE++AE IEG ++ A LKA+AL IE ++++ +++ R+ E+ Y + LE+ KA+Q+A++E+KK + AIG TI ++A+AGP+ +V LL +LG+++TLITDG TP+NL+ G + PLG Sbjct: 595 SARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLGMGPEGQPLG 859 The following BLAST results are available for this feature:
BLAST of TCONS_00072365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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