|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072429 ID=TCONS_00072429|Name=TCONS_00072429|organism=Clytia hemisphaerica|type=transcript|length=2301bp GGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGAAGTTT GTGATTGAATGTTCTTCgttgattttgtgaaaaatatgaGACGCTTTCAA GGAGGTCATTTTCATCAGCCGATGAAAGAAATGACGCTGCCAACGATGCA TAATTTGAACACGTCAGAATCTAACATTGTTGTTTGGAGAAAATGTACGC CTTTCTGTGATAAAACTGTCGAATGTCCTGAACATCATGAACTCTTACAA GCAATTGTAAATTGTACAGACCAATTAGGTCACTTATCGAACTTAGATGG CTTGAAAGCCTGTATAGAGAAATATCAGAGTATGGGCTGGGATCGGAATG ATACCATCCCAGACCCTGTTGCTTCGAACAGGTTACCGTTGATCCACTGG GCAGCTTCTCTCGGTAAATGTAATGCTCTTGAGTGGATGCTAAGCAACGG ATTCGATTCCACCGTTACGATAGGAAGTTTAACAGAAAACGCTTTGCACA GAACTATATTATACCTTTATAAATCAAGGCCTAAATTTACAACGAAAGAA CTGAaaccgaaattccgtaaaataTGTAATTTATTATCAAACTTAATGTA TCATTCGGACTTAGGGAATGGAACTCCGTTACATTTAGCCGCTAGTTTGT TATGTAGCTCAGAGACCAGGCTAGTTTTCTTTCAAACAGCAATTGAAGTT ATGGCCGCTCAGGCTAAGGAAATGAACGATTCGGATAGAATGGCGACTTT AGACGCTAAAAATAACGAAGGAAATACTTGTTTGCATATACTTGCTGGTG CTAATGAGAAAATCAAAGTTGATCACGTTTGTACCGCCATTTCCGCCCTA CTTCAATCGGGCGCTGATAAGACGATGAGAAATGCAAAGGATCAAACACC CTTGGATATTGCCATTCAAAAAGGTTACAATAACGTCATCGATGAACTGG TCAAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTCG TCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGATATGCG AAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTCGGCAT ACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTCA CCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCGAAGTA TGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGAAAACG AAGTAGATAGCAGTTTGCAACCGACGAGTCCTGCTTCAGATGCCATGTCT TCTATGTCCAACATCGATGTCAACTCACCACTACTGTCACACTTGGCGGA GGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGCAC GCGATGAAAGCCAGTTGAAACGTTACCAACAACAAGCTAAAGACCTTGAT ACACAAATCATgtacaaacaaaaagaaattgaacGTATAAAATCCGAAGT AGAAACTTTGCGTAAGAAACGCAATCGTTGCGATGACGAGACGGCGAAAC TTAAGAAAAAACTCGCTTCTTGCTCGAACGCGATTCGCGAACTTCCTTAC GGACAAAACTCGAACACGGGGGAAGCGCAATCAGTTGCTCACTCCCCTGC TACGTAAATCTCTTTTatagttttacaaatttttagtttttatagaGGCG TCTTCATAGTGTAAAACTTATTTTCCTTGTAACTTGTACAttttcttttt gcattttttacaaacttatcggccctttttacactttttattcCTTGTAA AAAGGAACGCGTGACCTTTCTGATACTTCACTTCATATTTGTAGTCTTGA TTATCGCGCAGAACCGGTCTAACAGAAAATGACGTTGTTCAagtactctc aggtgcctaataaatgCCCCCCCTCCccgctttttaatttttatccaTTT CGTCTTTTTTAAAAGAGGAACACCTTATTTTGTTCTGATTAGCCAGGTTT TATTCTATAATTACCTCTTGCAGGtatttaaaggtataatttccAACCCC TcgataaaaattttccaacctaTGAAGAACTTTCCGCGCGATGACGAGGC TTTCATATTCGAGCATTACTTGATTGTCGCTTTATTTCAAAGAATACTTT TTCTTTATGTGATCTTGTGCGATGTATttctttttgaacttttggcGCCT GAGAAATTAAAGATTAACAGAGtcagaatatttttatttcgagatAGTAT TGTACATAGCTGATGaatataatatttcttttcatttttaaagatatttt t Run BLAST on NCBI transcript from alignment at scaffold_77:346178..353527- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072429 ID=TCONS_00072429|Name=TCONS_00072429|organism=Clytia hemisphaerica|type=transcript|length=7350bp|location=Sequence derived from alignment at scaffold_77:346178..353527- (Clytia hemisphaerica) GGCAGCTCCTCATTTCAATCTCGTTATATATGAACTGATTGTTGAAGTTT
GTGATTGAATGTTCTTCGTTGATTTTGTGAAAAATATGAGACGCTTTCAA
GGAGGTCATTTTCATCAGGTATTCATCTTCTTTCAAGTCATCTTATATTT
CACCCATAGTTATTGAACAATTAGTTTTATGTAAAGCATTGTATATAGTA
TAGTTAAGGTTTACACAATTAAAAAGTATTTGACCCTTATGTCCGCCTTC
GACACGGAATTGATGTCATCTTATTTGATTACCTTTTTCCTTTTTAACTG
AATATTTTGCGGTCGTCAATATTAAGTTAACGAGTTTACATGTTATCCGG
AGTAGTTGAATGTCCAGTCGCCCACTTGAAAAATGTTTTGGTTACTTTAA
GGGTGCGGAAATCCTTTGCTTCCGATGTCCGAGTGACGTGTACATGAAGT
CTTAATTATATCAGCTTTCCATTAAATGGTAATGACCCTCACCTTAACCG
GATGTTGTGTGGTTGAAGTGCTTTGTCTCTTCGTATTATTATTAGACGTA
ACCTTACTGAAAGGGGCTGTTTATGGTTTGTAATGAGACTTGTACTATCA
GTATTGGGTTATTCCTCTTCATGTTGCTATGAGGATATTTTCTCAATTTT
TGAGATACTGTTTGAGGATCATCTTTGGTATTTGTTAATTGAACGAAATT
GAAAACATTTTTTATCTATCATATGGTTATGTGGTCATTTGATTTATGAA
AATAGGCGGGGCTAGGAGAGTTTTGCAAACGGACATATAACTATGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAGGGGGGATCAGACCCCTTTCCGCACTATGGGTAGGTTGTGATAAGA
GAGATTTGATGTGAACTAATTTGACCCAATTCTCTTTTCGTTTCAGCCGA
TGAAAGAAATGACGCTGCCAACGATGCATAATTTGAACACGTCAGAATCT
AACATTGTTGTTTGGAGAAAATGTACGCCTTTCTGTGATAAAACTGTCGA
ATGTCCTGAACATCATGAACTCTTACAAGCAATTGTAAATTGTACAGACC
AATTAGGTCACTTATCGAACTTAGATGGCTTGAAAGCCTGTATAGAGAAA
TATCAGAGTATGGGCTGGGATCGGAATGATACCATCCCAGACCCTGTTGC
TTCGAACAGGTTACCGTTGATCCACTGGGCAGCTTCTCTCGGTAAATGTA
ATGCTCTTGAGTGGATGCTAAGCAACGGATTCGATTCCACCGTTACGATA
GGAAGTTTAACAGAAAACGCTTTGCACAGAACTATATTATACCTTTATAA
ATCAAGGCCTAAATTTACAACGAAAGAACTGAAACCGAAATTCCGTAAAA
TATGTAATTTATTATCAAACTTAATGTATCATTCGGACTTAGGGAATGGA
ACTCCGTTACATTTAGCCGCTAGTTTGTTATGTAGCTCAGAGACCAGGCT
AGTTTTCTTTCAAACAGCAATTGAAGTTATGGCCGCTCAGGCTAAGGAAA
TGAACGATTCGGATAGAATGGCGACTTTAGACGCTAAAAATAACGAAGGA
AATACTTGTTTGCATATACTTGCTGGTGCTAATGAGAAAATCAAAGTTGA
TCACGTTTGTACCGCCATTTCCGCCCTACTTCAATCGGGCGCTGATAAGA
CGATGAGAAATGCAAAGGATCAAACACCCTTGGATATTGCCATTCAAAAA
GGTTACAATAACGTCATCGATGAACTGGTCAAGGTATTGTTTGATAACTT
TGAAATTTACTTTATCTGACATGTTCAACTCTTCGAATTGGCCGAATCCT
GGACATAAATTGGTAACCTGAAACAATTAAAGTACTCCCCCTTATTGCAT
TATGGAATATACCTAAAAGAATTCTCCAATCTTTTCTAAAAATTATTAAG
TCCAAAATTTTACGTTGACTTTTACTATGTTCTGATTTTCTTTTCTGTTT
TTCAGATAGTGAACCCATCAACGTCCTTGGTCAAAGAATCGCCTTCTTCG
TCTACATCTCATCACGATTCACGCTCCCTCATGACCATGGTCGATATGCG
AAGAGGTAGCCCGGTCTCCAACTCCATGATCAATCTCAATCGCTCGGCAT
ACGGTTACACGGAACGCAGGCGTTCACGCAGTCGTTCGCCCATTCGGTCA
CCGCGCTCTGAACGTGAACGCGAATCACCGCCAATGGCCCACTCGAAGTA
TGAAGACTCAGCGAGGAACGGATTTCTCATTAAACAAGAGGACGAAAACG
AAGTAGGTTTCCTTAATTTTAAAGGCAGAAACCTTAGCGATTTTTTAGTT
TTGGCTGCGAAAGTTTCTAACAAGCTAAGTAAAAATTCTTTTTTCGTTTG
ATTTCGCATTATAACACTGAACAGTGCGAAAAAAGTTACAAATGGATAAA
CGATAAAATGTCAAAACTATTGTCCATGAATGATAAATAGCATTATTGGG
AAAAGGTTGGGACCCTTGTTTACATGATCTGGAAATAGTGGTACAGTGGC
ATTAAAATAGTTTCTTCTCCATTTAGGTAGATAGCAGTTTGCAACCGACG
AGTCCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGGTGAGTA
AAGACGGAGAAATGGAGCGTTTGCCTGTTTTACCGTTTATAAGATAACTA
AAGGTTTTTGAAAATACTGCTCAGCTGCTCATGCCTGGTTAGGTCCCTTG
ATCTTCACGATTGTAGCTTTCAAGGCAGGTCTGACCATGAACAGTCATCA
GTCATCATTAAATTGTATCTTTTACATTAGATTGAAAGTTACGTTTTTCT
GCTCCAGCGGGAGTAAGTAGAGCCTTGCAGTTGCCATAACCTTGATAATT
AAATTTTACCCTTTTTTTCAGTCAACTCACCACTACTGTCACACTTGGCG
GAGGCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGC
ACGCGATGNGGCCGAAAATGCCGGAAATATGCCGGAAAAACTGGTTTTTT
GGCATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCTCAAA
TATGCGTATTAACAATGCCCAAAACATGGCCGAGTCCGATTTTTAAGAAA
AATTTTTTTCCGGCGGAAAATGCCTGAAATATGCCGGAAATCGCCGTTTT
TGCAGATTTTCATCGGACTTTTTCCTTATAATTGGTTGTTTTTTCATTCA
AAAACATTATTAATAGCAATGTCCACCATCAAGCATGTTTCAATTTTCAA
TAAAATTGATTTTTGAAGCCGGAGCTATTTAAAAATCGCCGGAACAACCT
ANNNNNNNNNNGACAGTATTTCTTGAATTTCTCGAGCTGTACTTTATATT
TTTTTATGAAATTTTGCACACTGATGCAATATGACAATACCTAAAATGTG
ACAGAGCCCGATTTTAGAAAAACATTTTTTTCTGGCCGAAAATGCCGGAA
ATATGCCGGAAAAGCCGGTTTTTTACATTTTCTCGAATTTTCATCAAAAG
TTTTTTCTGATTTTTTGCAGAAAAATGCGTATTCCCAATGCTTAAAACAT
GGCTGAGTTTTTTTGATTTTTGAAAAAAATTTTTTTTTGGTTGAAAATGC
CGGAAATCGCCGTTTTTGCAGATTTTCATTAGATTTTTTTCTTGTATTTC
ACTCAAAAACATTATTGATAACAACATCAAGCATGATTCAATTGTCAATA
AAACTGATTTTTGCGACCAGAACTTTCTATTTATTTTTCCCCTACAACCC
TTCCCTCTCCCCCATCAACAATCAATGATGAATTTATTGCGTTATGCATT
TTCGCTAAACGATATACTTTTTGACTGATTTTTTTCTCCTCGCATTTCTA
TCCAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTCGTT
TGATTTCGCATTACAGTGGAACCTCTAATTAGCGGACACCATCGGGGAAA
GGGGTTAGTGTCCGCTAATTAGAAGTGTCCGCCTTTTAGAAACTTTTGAT
CTCGGAGCTCCAATTTTGAAATTAAGCCATCCCAGGGTGTCGAAAATACA
AAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTACTTAT
CTGCAGACACTAGGCCCTAGAAGAACAAGAGAAAGGTTATTAAAACGCAA
CAATTTAGTTTTTAACAAATAAAAGAAAATCAGTGATTTACGATTTCTTT
GGCCCACCTAAATTCGTTGAATGGGTCAAGAGAAAACTGGAAATTTATAG
AAATAATTTGAATGATAAGACTAATAAGTGCTCGAAATAAAAATATCTAA
AATTTTTTTTTTCGATTTTGGACGTTTGTGACCAGTTTGATATTCAATGT
CCGCTAATTGGAGAGCTAAATAGGGGTTTTGGTCATTTCGTGCGAAAAAA
TTTGTCCGCTAATCAGAGGGTCCGCTAATTGAGTGTCCGCCTTTTAGAAA
CTTTTTTATGAGGATTTGACTAGGAAACGGCCGAGGAAAATATAATTGTC
CGCTAATCAGAGGTGTCCTTCTTTTAGAGTGTCCGTTAATTAGAGATTTT
ACTGTATAACACTGATATGAACAATGCGAAAAAAGTTACAAATGGATAAA
CGATTGGGACCCTTGTTTACATGATCTGGAAATAGTGGTACAGTGGCATT
AAAATAGTTTCTTCTCCATTTAGGTAGATAGCAGTTTGCAACCGACGAGT
CCTGCTTCAGATGCCATGTCTTCTATGTCCAACATCGATGGTGAGTAAAG
ACGGAGAAATGGAGCGTTTGCCTGTTTTACCGTTTATAAGATAACTAAAG
GTTTTTGAAAATACTGCTCAGCTGCTCATGCCTGGTTAGGTCCCTTGATC
TTCACGATTGTAGCTTTCAAGGCAGGTCTGACCATGAACAGTCATCAGTC
ATCATTAAATTGTATCTTTTACATTAGATTGAAAGTTACGTTTTTCTGCT
CCAGCGGGAGTAAGTAGAGCCTTGCAGTTTCCATAACCTTGATAATTAAA
TTTTACCCTTTTTTTCAGTCAACTCACCACTACTGTCACACTTGGCGGAG
GCTGGTCTTTTGAGTGAAGTTTCTGATCTCCTGTCACGAGCCAAAGCACG
CGATGAAAGCCAGTTGAAACGTTACCAACAACAAGCTAAAGACCTTGATA
CACAAATCATGTACAAACAAAAAGAAATTGAACGTATAAAATCCGAAGTA
GAAACTTTGCGTAAGAAACGCAATCGTTGCGATGACGAGACGGCGAAACT
TAAGAAAAAACTCGCTTCTTGCTCGAACGCGATTCGCGAACTTCCTTACG
GACAAAACTCGAACACGGGGGAAGCGCAATCAGTTGCTCACTCCCCTGCT
ACGTAAATCTCTTTTATAGTTTTACAAATTTTTAGTTTTTATAGAGGCGT
CTTCATAGTGTAAAACTTATTTTCCTTGTAACTTGTACATTTTCTTTTTG
CATTTTTTACAAACTTATCGGCCCTTTTTACACTTTTTATTCCTTGTAAA
AAGGAACGCGTGACCTTTCTGATACTTCACTTCATATTTGTAGTCTTGAT
TATCGCGCAGAACCGGTCTAACAGAAAATGACGTTGTTCAAGTACTCTCA
GGTGCCTAATAAATGCCCCCCCTCCCCGCTTTTTAATTTTTATCCATTTC
GTCTTTTTTAAAAGAGGAACACCTTATTTTGTTCTGATTAGCCAGGTTTT
ATTCTATAATTACCTCTTGCAGGTATTTAAAGGTATAATTTCCAACCCCT
CGATAAAAATTTTCCAACCTATGAAGAACTTTCCGCGCGATGACGAGGCT
TTCATATTCGAGCATTACTTGATTGTCGCTTTATTTCAAAGAATACTTTT
TCTTTATGTGATCTTGTGCGATGTATTTCTTTTTGAACTTTTGGCGCCTG
AGAAATTAAAGATTAACAGAGTCAGAATATTTTTATTTCGAGATAGTATT
GTACATAGCTGATGAATATAATATTTCTTTTCATTTTTAAAGATATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072429-exon-scaffold_77-1575043694:353410..353527 | TCONS_00072429-exon-scaffold_77-1575043694:353410..353527 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1575043694:350495..351331 | TCONS_00072429-exon-scaffold_77-1575043694:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1575043694:349972..350272 | TCONS_00072429-exon-scaffold_77-1575043694:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1575043694:347438..347500 | TCONS_00072429-exon-scaffold_77-1575043694:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1575043694:346178..347159 | TCONS_00072429-exon-scaffold_77-1575043694:346178..347159 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1510915933:353410..353527 | TCONS_00072429-exon-scaffold_77-1510915933:353410..353527 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1510915933:350495..351331 | TCONS_00072429-exon-scaffold_77-1510915933:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1510915933:349972..350272 | TCONS_00072429-exon-scaffold_77-1510915933:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1510915933:347438..347500 | TCONS_00072429-exon-scaffold_77-1510915933:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1510915933:346178..347159 | TCONS_00072429-exon-scaffold_77-1510915933:346178..347159 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1491911889:353410..353527 | TCONS_00072429-exon-scaffold_77-1491911889:353410..353527 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1491911889:350495..351331 | TCONS_00072429-exon-scaffold_77-1491911889:350495..351331 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1491911889:349972..350272 | TCONS_00072429-exon-scaffold_77-1491911889:349972..350272 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1491911889:347438..347500 | TCONS_00072429-exon-scaffold_77-1491911889:347438..347500 | Clytia hemisphaerica | exon |
TCONS_00072429-exon-scaffold_77-1491911889:346178..347159 | TCONS_00072429-exon-scaffold_77-1491911889:346178..347159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_77 | supercontig | scaffold_77:346178..353527 - |
Blast
The following BLAST results are available for this feature:
|