TCONS_00072576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072576
Unique NameTCONS_00072576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072576 ID=TCONS_00072576|Name=TCONS_00072576|organism=Clytia hemisphaerica|type=transcript|length=1275bp
cAGATAAATACAACACacaagttaaagaaaataattttaataaaatacaa
aatagaaaaagatgGATATTCCACCAAATCAGACGATTTACATCAATAAT
TTgaacgaaaaaatgaaaaaagaagTTTGGACCTGTCATTGATATAGTTG
CAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCCGTGAA
ATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATATTCTT
CGATAAAGCAATGAGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTG
CAAAGAATGATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAA
GCAGAAGAagCACGTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGA
AACAGTACCAGTTAAAGAAACTAATGGCCATACACCAGCACCGCCAGCAC
CGAATGAGACTAATGGGGATAAAACAGATGAAATACCAACTAATAATATC
TTATTCTTATCAAATCTTCCCGATGAAACGACACAAATGATGTTATCTAT
GTTGTTTCAAGAGATGCCTGGGTTCAAAGATGTACGGTTAGTAGATGGGA
GGGCAGACATTGGCTTCGTTGAATTCGACACACCATCACAAGCACAAGTG
GCAAAAGATCAGTTAGACGGCTTCAAAATTACACCTGAAAAAGCGATGGT
CATTAAATATGCTAAGCAGTGATGACGAATTCCTTAAACTAGACTTGTTT
TTATATACTAAAAATATTCCTATAGAAACAACTGTCCTAGCTAACCCAAG
ATAGCACAtgtaaaaatttcatgtcaGGGTATTGAAGGGTCAATAtttct
aaaactttaaaacatatcaaatatgatttttaaaagCATCAGGCTTGCCA
GTCAATTTATCTGGAGATGAGATTGTCATCATCACCATTGATTTGGCTAC
TATGAATATACGGGTCCTCATATTGGTAGTGTACGTTTTGTGGCCTTGGG
TAGCTTATTTCCCCAATAAGTTGTTTTAATGTCATTTAGACCATACGATT
TTGAACAAAGAACTTGCTGGGGTCACGCTACTATTCAAATGATTTTAATG
GACTCTTaaaatgtgtcaatttttgtggcgtttttttagttaacaatgta
aatatattttttgttttaaaagtgGTACTTTAACAGAAAATAtagattct
ttattttttttttccttagTGCCAAGATCTATGTAACAAAATGAGAAAGG
ACAAAAATCTTTCCTGAAATTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_8:488243..490971-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072576 ID=TCONS_00072576|Name=TCONS_00072576|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at scaffold_8:488243..490971- (Clytia hemisphaerica)
CAGATAAATACAACACACAAGTTAAAGAAAATAATTTTAATAAAATACAA
AATAGAAAAAGATGGATATTCCACCAAATCAGACGATTTACATCAATAAT
TTGAACGAAAAAATGAAAAAAGAAGGTACTTATTATTTTGAAAGTTAATC
CTTTATCAAGTTCCAGTCTATCTTGTCTCAATTTCAACCAGGAGACTTTG
TAGTAAATATTGCAGTCAATGCATCTGATTATGCCTAAAAGTATATTAAT
CAGATTTTACACTCTTTATAGTAATTTGCTGATTTGCTAATGAATTTATA
ACATAAAATTAAACAGAAATTATATTTTTTGCTATTCTCTATTCATAATA
AGGAAAGAGCTCTCTGTTCTTTGCTTTATTTGTCATTATAGGCTCTATCC
AGCTCACTAATTTCTATCCTTTTCGAATTTTCTTCTTTTAGATCTAAAGA
AACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGATATAGTT
GCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCCGTGA
AATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATATTCT
TCGATAAAGCAATGGTATGCATTTTATTTCACCCCCTTCGGGAAACAGTT
TGAAAAAATAACCTTAGCTTATAGTAAGGGTAAAGGGGGGTAGAAATATT
CAGAGGAACGTTTTGGCCACTTTGGCGTTTTTTTTTTAATATAGGTAATA
CTGGGAGGAAATTACACTAAATACACTTTGAGTCAAATTGTATTAATTTG
TTATCTTAGTAACACTTATTTATACTTCTTTTTCAAGAGGATAACTTTTG
CGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGGAACGTATTGGACA
AAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAAGGTTTCTTTTTTAATTT
TTAGGAGATTTCCCAAGTTATTATCAATGTTTCATTTGAATAAGTTTAGG
TGCAACCAGTAATAGTAATGGTCATACCTATCTTCGAAAACGTTTTATTT
TTTGGTCTTTTTCTGTTTACTCATTCAAAGGGGGACATCGTCCAGGTCTT
GTACTCCTGAATTTTTTCTCATTAGTGTGTATTCTCAAGTNGGGACATCG
TCCAGGTCTTGTACTCCTGAATTTTTTCTCTTTAGTGTGTATTCTCAAGT
TTTTTTTATGGCATTTTACTTATAATTGGCTTTCTATTTCTCTAAAGCAC
GTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTT
AAAGGTTTGTAATGACATAGTTTACCTATTCAATTTATAGTTGTTTTCAT
TATAAGTTCAATAGATTATCAACTAAGGATTAACATATTGTTTGATGCAG
TTTGATGTCATAAATTTTGTTTGTTTTTTTTAATCGGAGATACTTTCGTA
TGAAAAATGATCATGATTATCTTTATTTTCTTAGAAACTAATGGCCATAC
ACCAGCACCGCCAGCACCGAATGAGACTAATGGGGATAAAACAGATGAAA
TACCAACTAATAATATCTTATTCTTATCAAATCTTCCCGATGAAACGACA
CAAATGATGTTATCTATGTTGTTTCAAGAGTGAGTTGATAGTTTTAAGTG
TTTAGTTGTCTTCATATTTTAATGCAGTTGCCCTCTGAAAGTTTTAAATG
TTTCAGAAAAGTCCCTACCCTAGTACACAGCAGGCAATAAAAGATGGGTC
TATTTCAGCCTTAAGGACTTAACTTGATCAGTTGAATCTATACGAACAGA
TTTAAAACTTTTCAAGAGCCAAGCCAAGAGTTTTCAATTTCACCGTATAA
TATGTTTAAAAAGTAAGTTTTTTTAATTACCTTTTGCCCTATTGGAAATC
TTTAGGATGTCTGTGGCTTTTTAAAGAAAAATTTGAAACAACCATTTCAC
AAGCAAGTCATTATACCAAAAGTACACAGGAATTGATTAAATTGAGAATC
TTTTTTATTCGTTTAGGATGCCTGGGTTCAAAGATGTACGGTTAGTAGAT
GGGAGGGCAGACATTGGCTTCGTTGAATTCGACACACCATCACAAGCACA
AGTGGCAAAAGATCAGTTAGACGGCTTCAAAATTACACCTGAAAAAGCGA
TGGTCATTAAATATGCTAAGCAGTGATGACGAATTCCTTAAACTAGACTT
GTTTTTATATACTAAAAATATTCCTATAGAAACAACTGTCCTAGCTAACC
CAAGATAGCACATGTAAAAATTTCATGTCAGGGTATTGAAGGGTCAATAT
TTCTAAAACTTTAAAACATATCAAATATGATTTTTAAAAGCATCAGGCTT
GCCAGTCAATTTATCTGGAGATGAGATTGTCATCATCACCATTGATTTGG
CTACTATGAATATACGGGTCCTCATATTGGTAGTGTACGTTTTGTGGCCT
TGGGTAGCTTATTTCCCCAATAAGTTGTTTTAATGTCATTTAGACCATAC
GATTTTGAACAAAGAACTTGCTGGGGTCACGCTACTATTCAAATGATTTT
AATGGACTCTTAAAATGTGTCAATTTTTGTGGCGTTTTTTTAGTTAACAA
TGTAAATATATTTTTTGTTTTAAAAGTGGTACTTTAACAGAAAATATAGA
TTCTTTATTTTTTTTTTCCTTAGTGCCAAGATCTATGTAACAAAATGAGA
AAGGACAAAAATCTTTCCTGAAATTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045038XLOC_045038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072576-exon-scaffold_8-1575043694:490847..490971TCONS_00072576-exon-scaffold_8-1575043694:490847..490971Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1575043694:490358..490495TCONS_00072576-exon-scaffold_8-1575043694:490358..490495Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1575043694:490038..490134TCONS_00072576-exon-scaffold_8-1575043694:490038..490134Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1575043694:489668..489724TCONS_00072576-exon-scaffold_8-1575043694:489668..489724Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1575043694:489343..489487TCONS_00072576-exon-scaffold_8-1575043694:489343..489487Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1575043694:488243..488955TCONS_00072576-exon-scaffold_8-1575043694:488243..488955Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:490847..490971TCONS_00072576-exon-scaffold_8-1510915933:490847..490971Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:490358..490495TCONS_00072576-exon-scaffold_8-1510915933:490358..490495Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:490038..490134TCONS_00072576-exon-scaffold_8-1510915933:490038..490134Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:489668..489724TCONS_00072576-exon-scaffold_8-1510915933:489668..489724Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:489343..489487TCONS_00072576-exon-scaffold_8-1510915933:489343..489487Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1510915933:488243..488955TCONS_00072576-exon-scaffold_8-1510915933:488243..488955Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:490847..490971TCONS_00072576-exon-scaffold_8-1491911889:490847..490971Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:490358..490495TCONS_00072576-exon-scaffold_8-1491911889:490358..490495Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:490038..490134TCONS_00072576-exon-scaffold_8-1491911889:490038..490134Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:489668..489724TCONS_00072576-exon-scaffold_8-1491911889:489668..489724Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:489343..489487TCONS_00072576-exon-scaffold_8-1491911889:489343..489487Clytia hemisphaericaexon
TCONS_00072576-exon-scaffold_8-1491911889:488243..488955TCONS_00072576-exon-scaffold_8-1491911889:488243..488955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:488243..490971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68553	4.46709	0	0	17.7471	25.2781	15.7236	17.0102	7.74312	7.63781	7.97762	3.61153	4.59114	1.91297	3.65905	3.74388	2.81202	7.10871	0	2.97618	0	0	0	0.000136668	0.188657	3.27631	0.889659	0.825885	1.26225e-08	0
Blast
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BLAST of TCONS_00072576 vs. Swiss-Prot (Human)
Match: RU2B (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.515e-50
Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 3 
Query:  126 FGPVIDIVAMKTPKMRGQAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWTKGXXXXXXXXXXXXXXXXXXXXXXETVPVKETNGHTPAPPAPNETN--GDKTD-----EIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEFDTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ 719
            FG V+DIVA+KT KMRGQAFV+F+E+  +TNALR +QGF F+ K MRI +A++ SD+ +K  GT+  K K +++K  +  ++                T    P    PN  N  G+ T      + P N ILFL+NLP+ET +MMLSMLF + PGFK+VRLV GR DI FVEF+   QA  A+D L GFKITP  AM I YAK+
Sbjct:   34 FGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAT-------------TTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
The following BLAST results are available for this feature:
BLAST of TCONS_00072576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU2B6.515e-5048.29U2 small nuclear ribonucleoprotein B'' OS=Homo sap... [more]
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