TCONS_00073110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073110
Unique NameTCONS_00073110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073110 ID=TCONS_00073110|Name=TCONS_00073110|organism=Clytia hemisphaerica|type=transcript|length=638bp
CTAGCGGTAGCAAAGTTTTAAAGTTAGTGTTATAAAGCTCTAGTAAGATA
AAGGCATGTGAAAACATGACTTAGGTTTTGCATCATTTCCAGACTGGTTA
TACAACAAAGGCTGGTACATTGTAGATGTGTCTAGTCTGGTCTAGGATCT
CACAGTCtcaaaacaaaagcaacaaCAGGTTTGCTAtcatcatttgtttt
tttcttcatttagtCTTATAATTTAGTGTGTGTAAACGTTCATACCCTCC
AAACCACAATCAGAAGAGTGCAGAGCTGCATTTTTGATTCTAAGATAGGT
AAATGAAGTGACATCGCTGCAACTGAAACCATGACAAATAAACTTTTACT
GTTAgctatttaattttttgttttgatttcaaaaggcTAACACCAAGTTA
TAAAATGATTCACCATGACATTGTGATTATTAAAAGGTCTATTACCATaa
tttggtctaatgtcgacatcccctATCCCTCCTGCtctaaattcgacacc
cttttctagagctgaaaaattaaaaaaaggtcgaaattattttatttgct
taGAAGTAAGaaagataaatctttttttcaatcaccgattccgactttca
tattattcctatctttaaagaagggtgtcgaaattaga
Run BLAST on NCBI

transcript from alignment at scaffold_86:210958..211595

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073110 ID=TCONS_00073110|Name=TCONS_00073110|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at scaffold_86:210958..211595 (Clytia hemisphaerica)
tctaatttcgacacccttctttaaagataggaataatatgaaagtcggaa
tcggtgattgaaaaaaagatttatctttCTTACTTCtaagcaaataaaat
aatttcgacctttttttaatttttcagctctagaaaagggtgtcgaattt
agaGCAGGAGGGATaggggatgtcgacattagaccaaattATGGTAATAG
ACCTTTTAATAATCACAATGTCATGGTGAATCATTTTATAACTTGGTGTT
AgccttttgaaatcaaaacaaaaaattaaatagcTAACAGTAAAAGTTTA
TTTGTCATGGTTTCAGTTGCAGCGATGTCACTTCATTTACCTATCTTAGA
ATCAAAAATGCAGCTCTGCACTCTTCTGATTGTGGTTTGGAGGGTATGAA
CGTTTACACACACTAAATTATAAGactaaatgaagaaaaaaacaaatgat
gaTAGCAAACCTGttgttgcttttgttttgaGACTGTGAGATCCTAGACC
AGACTAGACACATCTACAATGTACCAGCCTTTGTTGTATAACCAGTCTGG
AAATGATGCAAAACCTAAGTCATGTTTTCACATGCCTTTATCTTACTAGA
GCTTTATAACACTAACTTTAAAACTTTGCTACCGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045327XLOC_045327Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073110-exon-scaffold_86-1491911889:210958..211595TCONS_00073110-exon-scaffold_86-1491911889:210958..211595Clytia hemisphaericaexon
TCONS_00073110-exon-scaffold_86-1510915933:210958..211595TCONS_00073110-exon-scaffold_86-1510915933:210958..211595Clytia hemisphaericaexon
TCONS_00073110-exon-scaffold_86-1575043694:210958..211595TCONS_00073110-exon-scaffold_86-1575043694:210958..211595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:210958..211595 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135653	0.357663	0.307649	0.0198727	0.676038	0.129676	0.552676	0.504825	0.58044	0.506033	0.375133	0.342284	1.73562	1.43305	0.692027	0.504474	0.258376	0.227018	0.328282	0.392732	0.578513	0.40985	0	0.378176	0.668088	0.382411	1.10744	1.62771	1.14279	1.42986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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