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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073051 ID=TCONS_00073051|Name=TCONS_00073051|organism=Clytia hemisphaerica|type=transcript|length=1423bp
GGAAAAGGTCAGTATATAAGaccgaaaatgaaagtgaaagtgaaattgCG
TTTTGAGCCAGATTCCAGGAAGAATACACAGTCAGTCGTCTCTTGCACAT
CTAACACAGTGATATTTTGAGATAATGGATACACAAAGTGTATTCTTGTT
GGATGGTGAATTAAGAATTCGACCATATGTCAGCAAAGTTCAATTGAAAG
AAATTGCATTAAAATGTTTTGGCCTTGAACTTGATGAAAATGTTAAACCA
GTGGAAATGGTGTCCTATGATGATAGAAACTTTCGGGTTCAAGGTCGACT
GAAGAATGATGACATCACAAGAAAATTcgttctgaaaattttcaattttg
gatcAGCACCAAAACTTTCAATGGAGCTAGCTGTTGATCTATTAATACGA
TGTGGGAGAAGCAAAATCAGAAGGCGATCGTGGAGGTTGGATATGGAACC
TTGTGACGTGTCCTCAGTATCTTACCGAAGATTATTTGAGCACCTGTATC
AAAGATCACGAGCAGAGAAAAGTGTTATCTTCTATTATAAGAGAGTTCGA
AACTGAAACGTTACCTCTGctgaaaaaacatttaaaaatgtcATACATAC
ATAATGATTTGAATGAAGCCAATCTTTTGGTAAGTGCTAATGATAGCATT
GATGGAGTAttggattttgatgatatagcaTGGTCGTTCCCGGTTGTCGA
TTTGGGTATTTGTATGATGTATTTATCCTTAGCATCTCAAGAAGAGGAta
tatttcataatttgaatcTACTTTATAAAGGATTTACATCCACACGTTGT
TTAAATGATGTCGAGGATTCGGCATTGTATAATATCTGTTTATTACGGTA
TGCAGAAGTGACTGTCATCTCACTTTATCAACATGAGTTTGTTGACCCAG
ATAATGATTATTTGCTTCTCCATacggcagataattttaaaagaataGAT
TATCTGAGATCGGCAGGTCCAACAATATTTAAAAAGAGAGTTTGTTCAGA
AGATTGAGACAAGTTTCTGTTCCTTTCCTTCTTCATTACTTCCCAATACA
ATAACAACATGTTTGACAACATTGTATTCTATAATAAAGGATTAATCTAA
TACTCTACTGATATccaattttaaaaacacttccTTGCCACAGAACCTGT
GGATAATTCTGTTTCCGTTAGGAAATCCCCTAAACTTGAGAGAAACAGTA
CAATGTTGAGAATTATATCACTACCAAATACCAAAAGGGATTGATCCTTT
TAATACACAACCCCTAATCATAAAGCAACAATCATCGTATGtttcttttt
ctaatttgaTAGTTTTCTTTTCGGATTTTGGTTTGTACATTTAAATCAAA
CTGTATTTAAGACTCTTATAATTTTGCTTAGAATTTTAAAATATGTTAGT
GAGAAAGATAATCACGAGAGGAA Run BLAST on NCBI transcript from alignment at scaffold_86:1029767..1036173- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073051 ID=TCONS_00073051|Name=TCONS_00073051|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at scaffold_86:1029767..1036173- (Clytia hemisphaerica)
GGAAAAGGTCAGTATATAAGACCGAAAATGAAAGTGAAAGTGAAATTGCG
TTTTGAGCCAGATTCCAGGAAGAATACACAGTCAGTCGTCTCTTGCACAT
CTAACACAGTGATATTTTGAGGTAGGTTTCATTTTTTGTGAGCTAGTCTT
AGTAGGTGACACAGATTTTTTGAAGAAAATGTCCCAATTTTAGAACATAA
GAACATCTCATTCACGAAAATTTTTAAGCTAATTGAAAAAAATATCCCGG
CTGAAAATTTTAAAACTGTTGCAGAAAGATTTATGATTTTTAAAATAGTC
CCTGAATGAATACCGTGAAGTCGAGTAACTTGCATCAGTGGAGGGAAACT
TGCATAGCCATCAAATGACAGAGCAATCAAAGCAGAAAAATTTCAAAACA
AATGAACTACCGTGAGATTGGGTAACTTGCATTGCATCAGTCAGTGTATA
GACCTAAAGCTCTAAAACAGCATCTAATAACATGAAAACCAGAATATGAT
TCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAAACATCAATTTGT
CAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCG
CACTGTCATCATTGACAATAAAACAAACGATTTTCTGTCAAGAGCCTTGT
AAACATTCCAACAACTTCCATCGAAATGATCTATCACAACTCAGTCTACC
ATTTTTAGCGCGATCCGAGGATTGAGCTGAGAACGCTCCGCGAACTCCTG
CGCGGATGAAAAACTTCAATCTGCCAATCATTTTCTCAAGCGAAGAGTAC
GCGAAGCGATTCCAGCTTTACGATAGTGCCGCGTGTCATCAATGGATAGT
ATTCAATTATCATTATCCCTTTATTTTCATTCCTAGAACTTTTGCGAAAA
AAAGGAAAAATAGAAAAGTTGTATTTTTTACTGCTCTATTCACATACTGA
ATTTGAAAGATCTTCTATGTGGCGTTTTTTTGCAAACTTCAAAAAACTGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGCCTTTGCGGGACTTTGGCTTAAGTGC
TTGAGTGCAGCATAGGGTACAAAGTCCAAACATGCGTTTCCCGTAATTTT
TGTGTGAAGAGTTAGGTCTATACTGTCAGTGGTAGACAGGAGACCCGTCG
TGTTTTTTTTTATAATTTGATGTACACAAGCAGACAAGACAGGTTCGAGC
TGTGAGTCCAATATATTGGATAAACCAAATTTCGAAAGTTGCGCTTTCTC
TAAGAAAGTGTGACCAGTAAAAGAATAGGCCGTTCGTAAAAAATTGTTTG
GTTCCCGTCACCCGACGGACCGTGATTTCTACTGAAAAATTCTCATTCAC
ATTTTCCTGACAGCTGAAACTCCACCATCACCATCCATGTTTTCTTTTTT
GAGAGAAAGAGCAAACGCTAATCTCGCCCAAAAAAACAATTCGAAACCTG
TTAATTCTGTTTTTTCCTGATTTTCAAGTCCGATTTTTCATTGCGGACCA
TATGGAAGCATCAAAACAAACCAGCGGAGCTTTTGTAAAATGAACAAGAG
GCTTAGGGCGATCAAACGTTTGTTTACCACCCTTTTCTAAGGAAAATTCC
GCCCTCTTGGACTGTTTCGTTCAAACAGAAAATATTTTTCGCCCGACCGA
CCGACCGACCCACTTTTTTATGACTGGAATGACGGGAACCAAGGGATTTT
TTACCAACGGCCATAACAAAATTTGATTGGCTATGTTTTCAACCGTTATT
AGGTTCTGAGGAATTCAAACTCTCAGCCCGTACCATGCTATACATTTCGC
CATCAGTTTATCAAAGAAGAAATCATAGCATGGATTCTCAGGCTACATCA
GTGGAGGCAAACATATATAGCCCTCAAATGAATGACCTGTCTGCCTGGTC
ATTAAAATACAACTATGCAGCTCCGCTCACAGCAGCTCTACTCTACCATT
TTTGTTTTGATTTAGCTTTGTATTTTAATGACCAGCCAGGTCATTCATTT
GAGGGCCATGCATGTTAGCCTCCACTGATGCAAGTTACTTAAAAATAAAA
TAAAATTTGACACCTAGAAATTTTAACTTAGAGTAGACATTTGACACATT
TCCAATTCAAATTTATTTTTTATCTTTAATATATCATTTGAACGGTATAT
ACCGTAAGTTGGCCTAATGNTTTTTATCTTTAATATATTATTTGAACGGT
ATATACCGTAAGTTGGCCTAATGTCGACATCCCTCTTCTAATAGACCTTT
TTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCAGAAAAACA
ATGATAAAACCATGCATAATTATTACAATATGCATGATACAGTAATTATG
CATGGCTCTATCATTGTTTCTATGGCTGGACTACATAATTATTCAACAGG
AAGTCATCTTTGTTAAAAGGTCTATTTCGACATCCTTTAGAGATAGGAAT
AATAGGAAGGTCGGAATCACTGATGGACTCCTCAACTGATCGCTTAGCAA
AAAAAATAAGTTTCAATAAGCGATTCCGACCTTCCTATCATTCATATCTT
TAAATAAGGATGTCAAAATTAGAAGAGGGATGTCGAAATTAGACCAACTT
ACTGTAACTCATTGAACATTATATTTTGTATAATACAATGTGTTGTCTGA
TCTTATCTATATCAGTGAAAGGTTTTAAACTGCGTTTTATTCTTATCTTT
TCGTTACAGATAATGGATACACAAAGTGTATTCTTGTTGGATGGTGAATT
AAGAATTCGACCATATGTCAGCAAAGTTCAATTGAAAGAAATTGCATTAA
AATGTTTTGGCCTTGAACTTGATGAAAATGTTAAACCAGTGGAAATGGTG
TCCTATGATGATAGAAACTTTCGGGTTCAAGGTAAATATTAAGGTGGTTT
TTTTTCAACTTCAATTGCTGAATTGAGCTAGAATTAGTATAGTTGACGCT
CTCTAATTCGATCTTCAAGGGGAATTGGATTTGCATCGAATAAGGGAGCG
TGGGTTATGAGAGTTTCTTGTTGACAAGGACTTTAAATTTCATCAAATAA
GGGAGCTCTATCAAATAGTAGAACGTCGAATTAGAGAGTGTCAACATTAT
ATGTATTTCAACTGTATATATACACTTTAGCAAACAGAAACTTGAAAGAT
CTTCGGAAACTTTGGCCCTTATTGTATAGGTTTACGCGTTTGATTTTTTA
GGAAAGTTTATAAATCATTAAAAAGTATATACAAAACCTGAAACTGTAAC
TAATATTTTCACCTTTCAGTCTTCTTAAACTTGCACTTTAATAGCTGTTT
TAAATTTATTATGAATCAATAAATTTTTGTCAGTATTTGAAGTTACTGCT
CTGCTTCAGTGGTGGCTGAAGAACTGTTTAATGTGCAAAAATTTTCAAAT
TTCAAAGATCGATTTTGTAAGATAGAGCAACAGGCAACATTTTGCCATTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTTTGGGAAATTTT
CAGGAGAGATACATAAAATTGTCATTAATATCATGTTCAAATATCTAAAA
CATTATCTTTAAAGGAAAGAAAAAAAAATGGCAATGTTTACATTTCTCTA
ACCTTCCACAGTACTAAAGTGAGCATTTTTACCTACCGCCTCTACGGTGG
AGATGGCGAGACTGTTAAATGGTGTATTGTCCAATGATTGAATGAATGTG
CAAATTTTCCAATTTTCAAGTTTGTTTCCGTTTTTTACCGAAAAAGTTCC
CGATTTACTGAAAAATTGGGTTTGCGTGAATTGGAAAAAACGTTTGCGTG
ATTGCGTGAATTGAGGGTTCGCTGGGGGAGAAGGCTCATTCACATTGACA
TTTTGTTAGCAAATACCAATTTAAAATTCCGACCAAATTTTTTTTTAATT
TTTACTCTTTTCTTAATTAATCCCCCTATGAAAGTTTAAAACCCCAAATT
TTATCCGTAAAAAAAGTCCCACCCCTTCCCTAACAAGCCTTTCTCAAAAT
CATAATTGGAAGGCTTTCTATATTTGAAACACATTGTTTTTACATCTTAG
GTCGACTGAAGAATGATGACATCACAAGAAAATTCGTTCTGAAAATTTTC
AATTTTGGATCAGCACCAAAACTTTCAATGGAGCTAGCTGTTGATCTATT
AATACGATGTGGTGAACAATGTTCTGATTATTTAAAAGTCTCTACACCAA
TCAAATCTTTACAAAACGGTCATTCTACTGAAAATGTTGAATTTATTTCA
AGTTTTGATATTCCTGTACTTGAATTTGCATCATATAATAATTGCACAAA
AGAAGATTTGATTGAAACAGGGGCACTGAGAGTTGGTACATCAGGAGAAG
TGACTTGTCGCCATCATGTGAGACTACTGACTTATCTTGAAGGAAGAGTT
CCTGATTTTTGTAAAGACAATCTTACAGACTCTTTCGTTCGACATTGGGG
TGCAACTTGTGCAAGAATTTGTAATGCATTTGAAGTGAGTGATTTATTTA
TTGCACCACCCGTCTTTTCTAAACTCCATGTTAGTTATTCCAATGGGGAA
TATCTTTCGGTCTATGGTATCCGAAATAATATGTAGCACTGTCTTTGGTA
AAACAAACCCACCTTTATCAATACTAAAGGCTTAGGGACACGAGAAGTTT
TTTTCACGTTGAGGCAATGCAACATGCTCCATCCCACCAACCTGAAACGC
TTTCTCAGGTTTCAACCCCATTTTCCATTTAATAACATTTATGCTTCTCT
CACTTTTGTCCCAGGGACAAAATCAACGTGTCTTTTGGGTAAATTTCCCT
GCATTGCACCAACGCGAAAAAAACTTCTCATTTCCCCAAGCCTTAATATA
TGTAATATAGAAACTTTTCACATATTTTTTGTCCTTAGGGAGAAGCAAAA
TCAGAAGGCGATCGTGGAGGTTGGATATGGAACCTTGTGACGTGTCCTCA
GTATCTTACCGAAGATTATTTGAGCACCTGTATCAAAGATCACGAGCAGA
GAAAAGTGTTATCTTCTATTATAAGAGAGTTCGAAACTGAAACGTTACCT
CTGCTGAAAAAACATTTAAAAATGTCATACATACATAATGATTTGAATGA
AGCCAATCTTTTGGTAAGTGCTAATGATAGCATTGATGGAGTATTGGATT
TTGATGATATAGCATGGTCGTTCCCGGTTGTCGATTTGGGTATTTGTATG
ATGTATTTATCCTTAGCATCTCAAGAAGAGGATATATTTCATAATTTGAA
TCTACTTTATAAAGGATTTACATCCACACGTTGTTTAAATGATGTCGAGG
ATTCGGCATTGTATAATATCTGTTTATTACGGTATGCAGAAGTGACTGTC
ATCTCACTTTATCAACATGAGTTTGTTGACCCAGATAATGATTATTTGCT
TCTCCATACGGCAGATAATTTTAAAAGAATAGATTATCTGAGATCGGCAG
GTCCAACAATATTTAAAAAGAGAGTTTGTTCAGAAGATTGAGACAAGTTT
CTGTTCCTTTCCTTCTTCATTACTTCCCAATACAATAACAACATGTTTGA
CAACATTGTATTCTATAATAAAGGATTAATCTAATACTCTACTGATATCC
AATTTTAAAAACACTTCCTTGCCACAGAACCTGTGGATAATTCTGTTTCC
GTTAGGAAATCCCCTAAACTTGAGAGAAACAGTACAATGTTGAGAATTAT
ATCACTACCAAATACCAAAAGGGATTGATCCTTTTAATACACAACCCCTA
ATCATAAAGCAACAATCATCGTATGTTTCTTTTTCTAATTTGATAGTTTT
CTTTTCGGATTTTGGTTTGTACATTTAAATCAAACTGTATTTAAGACTCT
TATAATTTTGCTTAGAATTTTAAAATATGTTAGTGAGAAAGATAATCACG
AGAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073051-exon-scaffold_86-1575043694:1036053..1036173 | TCONS_00073051-exon-scaffold_86-1575043694:1036053..1036173 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1575043694:1033093..1033264 | TCONS_00073051-exon-scaffold_86-1575043694:1033093..1033264 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1575043694:1031513..1031623 | TCONS_00073051-exon-scaffold_86-1575043694:1031513..1031623 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1575043694:1029767..1030785 | TCONS_00073051-exon-scaffold_86-1575043694:1029767..1030785 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1510915933:1036053..1036173 | TCONS_00073051-exon-scaffold_86-1510915933:1036053..1036173 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1510915933:1033093..1033264 | TCONS_00073051-exon-scaffold_86-1510915933:1033093..1033264 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1510915933:1031513..1031623 | TCONS_00073051-exon-scaffold_86-1510915933:1031513..1031623 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1510915933:1029767..1030785 | TCONS_00073051-exon-scaffold_86-1510915933:1029767..1030785 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1491911889:1036053..1036173 | TCONS_00073051-exon-scaffold_86-1491911889:1036053..1036173 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1491911889:1033093..1033264 | TCONS_00073051-exon-scaffold_86-1491911889:1033093..1033264 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1491911889:1031513..1031623 | TCONS_00073051-exon-scaffold_86-1491911889:1031513..1031623 | Clytia hemisphaerica | exon |
| TCONS_00073051-exon-scaffold_86-1491911889:1029767..1030785 | TCONS_00073051-exon-scaffold_86-1491911889:1029767..1030785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1029767..1036173 - |
Blast
The following BLAST results are available for this feature:
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