TCONS_00073368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073368
Unique NameTCONS_00073368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073368 ID=TCONS_00073368|Name=TCONS_00073368|organism=Clytia hemisphaerica|type=transcript|length=496bp
CACAGACCAAACTTAACTAGGCTTTTCTCATCAACTCAATGAAGGTCTGT
CATAATGGTTATGTCCAAGGTACTGTGCcctgttttttcaaaattatagt
acaaatatttccaattttaaCATTTATGTCACCTGCACATAACCACGATG
ACAAACTTACAAATTtctgttattttattatattatttttctcATCAACC
TTAATTTGCTTCTTTTATTATCATAAAGAGTAAAGGCATCCCAACTctga
caaaactttttaaatctgTTCATGATAAATGTCGTTATTTTTTGACCAGA
TTTTAGAACTTGTCTAAGATTTCGTCTTTCTGCAGCCACTTAGTCCAATT
CTTATCATGAAGTCTTTGTTGGTACGATTTTTTGGAATAATTATCTATTT
GCCTTCTCCCCTTCTCCCCCACCCCgccttaatatttttttgtcaatttt
aataAGATGAAAGAGATGTTAGAATTTATTTATGTAAACTTGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_90:83456..83951

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073368 ID=TCONS_00073368|Name=TCONS_00073368|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at scaffold_90:83456..83951 (Clytia hemisphaerica)
ATTTCAAGTTTACATAAATAAATTCTAACATCTCTTTCATCTtattaaaa
ttgacaaaaaaatattaaggcGGGGTGGGGGAGAAGGGGAGAAGGCAAAT
AGATAATTATTCCAAAAAATCGTACCAACAAAGACTTCATGATAAGAATT
GGACTAAGTGGCTGCAGAAAGACGAAATCTTAGACAAGTTCTAAAATCTG
GTCAAAAAATAACGACATTTATCATGAAcagatttaaaaagttttgtcag
AGTTGGGATGCCTTTACTCTTTATGATAATAAAAGAAGCAAATTAAGGTT
GATgagaaaaataatataataaaataacagaAATTTGTAAGTTTGTCATC
GTGGTTATGTGCAGGTGACATAAATGttaaaattggaaatatttgtacta
taattttgaaaaaacaggGCACAGTACCTTGGACATAACCATTATGACAG
ACCTTCATTGAGTTGATGAGAAAAGCCTAGTTAAGTTTGGTCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045522XLOC_045522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073368-exon-scaffold_90-1491911889:83456..83951TCONS_00073368-exon-scaffold_90-1491911889:83456..83951Clytia hemisphaericaexon
TCONS_00073368-exon-scaffold_90-1510915933:83456..83951TCONS_00073368-exon-scaffold_90-1510915933:83456..83951Clytia hemisphaericaexon
TCONS_00073368-exon-scaffold_90-1575043694:83456..83951TCONS_00073368-exon-scaffold_90-1575043694:83456..83951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_90supercontigscaffold_90:83456..83951 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.494463	0.361635	0.279928	0.273866	1.83373	0.790385	1.11249	3.12451	1.77087	2.45156	1.37763	0.576292	0.657704	0	0.701932	0.451968	1.11358	0.285345	0.262813	0.275015	1.43423	0.874456	0.850413	1.15972	0	0.473801	1.52552	2.17076	3.4301	2.5162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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