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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073403 ID=TCONS_00073403|Name=TCONS_00073403|organism=Clytia hemisphaerica|type=transcript|length=3724bpRun BLAST on NCBI protein sequence of TCONS_00073403-protein >TCONS_00073403-protein ID=TCONS_00073403-protein|Name=TCONS_00073403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MYLQEFMRGTYSKAILSTPGRIVLMLVWAGLLAGGAYGLSQLKQDFDPEWRun BLAST on NCBI transcript from alignment at scaffold_91:309920..339741- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073403 ID=TCONS_00073403|Name=TCONS_00073403|organism=Clytia hemisphaerica|type=transcript|length=29822bp|location=Sequence derived from alignment at scaffold_91:309920..339741- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_91:309920..339741- >TCONS_00073403 ID=TCONS_00073403|Name=TCONS_00073403|organism=Clytia hemisphaerica|type=CDS|length=13110bp|location=Sequence derived from alignment at scaffold_91:309920..339741- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073403 vs. Swiss-Prot (Human)
Match: NPC1 (Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 4.857e-33 Identity = 116/513 (22.61%), Postives = 232/513 (45.22%), Query Frame = 2
Query: 128 FFFQGIGVDDVFVIIQNWDNIGGPKNRDRSIAENVSLALRTAGVSILVTSITDVCAFLIGATTILPALRSFCIFAGIGVLAVFILTCTFYVAWLALDSRRQRDHRDACCCCASLPTDWQPLECSKRMYLQEFMRGTYSKAILSTPGRIVLMLVWXXXXXXXXXXXSQLKQDFDPEWFLPEDSNARIYSSVDDKYFSNDGIQAYAYIEDVDYFA-------------DQDKLVS-MYNTLENNQYTVKG-ETQSWYQTYIAWMAANHAA----DLTN---------------------GKPSTKDIFYNR-----LDEFTKTQVGKVFEKEIKGNIT-----EQKIEASRIKYKHIKLEGASVEVKAMDSVQDELAKITFT-----NDFSPFGYTRFYVGWETNKVISEELIRNLLLAGVIVFLVTLFLIA-NVWVSLLVLTCVVFTLINIAGYMHFWGLTVDTVTTIQLILAIGLSVDYSAHIGHGFMAAREGNRVQRAAHALEEIGPAVVHG 1498
F +GVD++F+++Q + + + ++ + + L S+ ++S ++ AF +GA +++PA+ +F +FAG+ V F+L T +V+ L LD +RQ +R CC D ++ S+ L F + +YS +L R +++ ++ G+L+ L+++ D +P+DS Y +Y + E DY + + D LV ++N + + YT G SW Y W+ + ++T+ GK + + R L + + GK + ++ A+ H L+ ++ + A+ + + +T T + + F Y+ FYV +E I ++ I NL ++ +FLVT+ L+ +W ++++ + L+N+ G M WG++++ V+ + L+++ G+SV++ +HI F + +G+RV+RA AL +G +V G
Sbjct: 692 FLVLAVGVDNIFILVQAYQR--DERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESC-LFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSG 1201 The following BLAST results are available for this feature:
BLAST of TCONS_00073403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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