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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073647 ID=TCONS_00073647|Name=TCONS_00073647|organism=Clytia hemisphaerica|type=transcript|length=2156bpRun BLAST on NCBI protein sequence of TCONS_00073647-protein >TCONS_00073647-protein ID=TCONS_00073647-protein|Name=TCONS_00073647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp MACWKPRVWKNILSNGVRIKRYHDLSRAGVLNSTINKNTAEFKENEHQMSRun BLAST on NCBI transcript from alignment at scaffold_97:171880..209344+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073647 ID=TCONS_00073647|Name=TCONS_00073647|organism=Clytia hemisphaerica|type=transcript|length=37465bp|location=Sequence derived from alignment at scaffold_97:171880..209344+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:171880..209344+ >TCONS_00073647 ID=TCONS_00073647|Name=TCONS_00073647|organism=Clytia hemisphaerica|type=CDS|length=25560bp|location=Sequence derived from alignment at scaffold_97:171880..209344+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073647 vs. Swiss-Prot (Human)
Match: MCCB (Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1) HSP 1 Score: 783.867 bits (2023), Expect = 0.000e+0 Identity = 379/548 (69.16%), Postives = 452/548 (82.48%), Query Frame = 2
Query: 221 KRYHDLSRAGVLNSTINKNTAEFKENEHQMSELVEDLKGVCTKIKDGGGEKAKQRHLSRNKLLPRERISSVLDPGSPFLELSQLAGYNLYGKEEVPAGGIIAGIGKVSGVECMIVANDPTVKGGSYYPITIKKHLRAQEIATENNLPCIYLVDSGGANLPRQTEVFPDKEHFGRIFYNQANMSAKKIPQIAVVLGSCTAGGAYIPAMADESIIVRNQGTVFLAGPPLVKAALGEEVTAEQLGGADLHCRKSGVTDHYAVDDFHALHLARQCIKNINYQKENQVVTQDPNEPAYPIEDLYGIVGANLKRSFDVREVIARIVDSSEFDEFKALYGETVVTGFARIHGYPVGIIGNNGVLHSESALKASHFIELCCQRKIPLVFLQNITGFMVGKDAEAGGIAKNGAKMVTAVACANVPKFTVIIGGSYGAGNYGMCGRAYNPRFLFMWPNARISVMGGEQAGTVLSTVKKAQLMKQGQEITPEIEAKIDAELKAPLVKQFDKEGHPYFASARLWDDGVIDPKDTRTVLGLAVSASLNAKIQPTKFGVFRM 1864
+ YH S A L + + +A ++EN QM LV L IK GGGEKA+ H+SR KLLPRERI +++DPGSPFLELSQ AGY LY EEVP GGII GIG+VSGVECMI+AND TVKGG+YYP+T+KK LRAQEIA +N LPCIYLVDSGGA LPRQ +VFPD++HFGR FYNQA MS+K I QIAVV+GSCTAGGAY+PAMADE+IIVR QGT+FLAGPPLVKAA GEEV+AE LGGADLHCRKSGV+DH+A+DD HALHL R+ ++N+NYQK+ V + EP +P ++LYGIVGANLKRSFDVREVIARIVD S F EFKA YG+T+VTGFARI GYPVGI+GNNGVL SESA K +HF++LCCQR IPL+FLQNITGFMVG++ EA GIAK+GAKMV AVACA VPK T+IIGGSYGAGNYGMCGRAY+PRFL++WPNARISVMGGEQA VL+T+ K Q ++G++ + EA LK P++K+F++EG+PY++SAR+WDDG+IDP DTR VLGL+ SA+LNA I+ T FG+FRM
Sbjct: 21 RAYHGDSVAS-LGTQPDLGSALYQENYKQMKALVNQLHERVEHIKLGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQLYDNEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNRLPCIYLVDSGGAYLPRQADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVPAMADENIIVRKQGTIFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHALHLTRKVVRNLNYQKKLDVTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVDGSRFTEFKAFYGDTLVTGFARIFGYPVGIVGNNGVLFSESAKKGTHFVQLCCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNYGMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSADEAA----LKEPIIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAALNAPIEKTDFGIFRM 563 The following BLAST results are available for this feature:
BLAST of TCONS_00073647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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