TCONS_00000830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000830
Unique NameTCONS_00000830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000830 ID=TCONS_00000830|Name=TCONS_00000830|organism=Clytia hemisphaerica|type=transcript|length=2365bp
GCCAAGATtgtttggttgaaatttgaatttctttctttaagttTTTTTGT
CATATAACTATACACTAgaattaaaatttacaaaaaaaatgaataaagcG
CTGAACAATACAAATTAAAGGAATAAATGCTTTTTAATTACATCGTTTGA
TTAGAAAATTTTACGGGTATCAGTTAAGCACTTAATCGCAATTTATTTAA
TGTTTTACCCATTTACATACCTGAATATTTCAAGACAAAAAGGATCTTAA
AGGGACGAAAAGTCAATATAACGCAAAATTCCTCTCTTTCCTGCTCACTA
AGTTTAAACGGGTATTGAGAAAACTACGAAATTGTCCACGTTTGAAAATG
TCCGTTCAGTTAGGAgttcaagaaaaaatatatctAGTTAACTTCTTCTC
GAGTCCtttgttttatgaattttttgatCCTCTGTACTTCCGTTGACACA
ACACAACTGACCTCCGATAGTCTCGTCGTTGCAGACAAATCTTTCAACCC
AATACATGCAACATATACAACTTTCTCCTTCCCTTCCAACACAACACCTC
AGTTGTCATCATCTTTTGGATCGTTTCCTTTAAAAGAAGCTGTATGAGCT
TCAACCGTGATCGGTCCAAATCCCACATGTTCTTTTGTAAACACATAAGG
GTGTGGTTGACTGGATGGCCTTTCCACTTTTGATTTATCAAAGTTTGTCT
GATGTCCAAAATCACcattaaacatttttgaaaattgattcgGTGATGAT
TCGTCGATTCTTGAGGCTCTGTCATCAGAATGATCGCCTCCATATCCTTT
GTTGAACATTGTGTTGAAATCCTCTGCTGTTGATGAGCGAGACGAATCAT
CGCCGTAATAATTGTTTGGATGTGAAAGTGGTGTACCAAACTCTGTTGAA
TGTGTTTTAAGGTCAGGTTCTTTATGGCTTTCGCTGTAACCCTTTGTAAA
CATTGCATTGAAGTTATCAGCTATGTCACTTTGAGGGTTTCCGTGGTGGA
CTGAATCGCCATAGTAGTTTGTAGGATCACCAAGTGGATTGCCTAGTTTC
GAAGTATCAGGGAAAGAGGTTGTATCATGATCAGATGGAGGGAGAGCTTG
GTGGTGATATCCTGGATCCGATCCATAACCTTTTGCAAAcatatcattga
aatcatcTGCAACGTTGCTTGGATGGTTTGGACCGTGCATTGAATCGCCA
TAATAATTGGTTGGGTCACCGAGAGGATTTGACAGTCTTGAAGTATCAGG
GAAGGCTGAATCGTGGTAGGTGGGCGAGTCATGATGGTAGTCAGACCCGT
ATCCTTTAGACAACATTGCGTCGAAGCTCTCAGCAATATTGCTTGGCGGG
TTTGGGTGATGATATGGATCACCATAATACGCCGTTGTATCCCCGAACCG
ATTTCCTAATCTTGACACATCTGGAAAGTGCGTTGAATCGTCATAAATAG
CTGGATGGTGATCATGAAAGCCGGGGTGATAGTCTTCACCATAACCTTTT
GCGAACATAGAGTTAAATCCGTCTGCAATGTTGCTGGGGTGGTTAGGATG
GAATGGTTCGCAATACAATGTTGGAAAAGGTCTGTAGCCTTCTCCCGGTG
ACACATGGTGTACGTCGTATTGATGGAAACTAGGAGGAACTGGTGTTCCG
AAGTTTGATTCTTGATGTATAACTGGGTGGTTGAATGCTCCAAGATCTTC
CCTTCTTGGATCTAGTGGCCCTTCGTGTACGTAACCTTCATTGTGAAATG
GAAGAGGGCCGTTATCATGGAAATATCCAGGGCCGTTTTCAGGGAAAGGT
GTTCTCGAAGCGTACGCTGTTGGAAGAGGATAGGAAATTTGTGGTGTCGC
AAATGATGACATTGGTCCTAATGGTTCTCGGGAAACTACCGGAACAGCCA
TATACCCGTGAAATATACCATCCGTTGATTGACCACTGAATACGGGCATT
CCGCTCATCGTCATAGAGGACCAGGGACCTTGCATTGTCGCTGGGAAGAC
ACCGCGGGTGCCGAAGGACGGGAGGGCTGCCGGAGCTCCATTGATGAAGC
TATTCGCGAGAGGAAGCTGAAATCCAGTGAAATGATCATCAACATTTGCA
AATCCTTGGATTAGTGCTGGATTCTGAGGGTTGATTACTAAATAACGTTT
GCCTTGCTTTTCAGTGATATAAACAGGAGGGATTTTTGATGCTTTACTGT
TTCTTTTATCTCCTTTAGATTGTTTTGGTAGTGTTTTCAATGTCTTTTTA
ACTTGTTGTAAAACGTTTTTTATTACAAAAGTAGGTACATAAACTAGGTT
GTTATTATTGTGTTTCGATTTGTCGTCTTTGTTTGGAATTAGTGATGCCT
TCTCGATCCTTTCTA
Run BLAST on NCBI

transcript from alignment at sc0000005:753476..755894-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000830 ID=TCONS_00000830|Name=TCONS_00000830|organism=Clytia hemisphaerica|type=transcript|length=2419bp|location=Sequence derived from alignment at sc0000005:753476..755894- (Clytia hemisphaerica)
GCCAAGATTGTTTGGTTGAAATTTGAATTTCTTTCTTTAAGTTTTTTTGT
CATATAACTATACACTAGAATTAAAATTTACAAAAAAAATGAATAAAGCG
CTGAACAATACAAATTAAAGGAATAAATGCTTTTTAATTACATCGTTTGA
TTAGAAAATTTTACGGGTATCAGTTAAGCACTTAATCGCAATTTATTTAA
TGTTTTACCCATTTACATACCTGAATATTTCAAGACAAAAAGGATCTTAA
AGGGACGAAAAGTCAATATAACGCAAAATTCCTCTCTTTCCTGCTCACTA
AGTTTAAACGGGTATTGAGAAAACTACGAAATTGTCCACGTTTGAAAATG
TCCGTTCAGTTAGGAGTTCAAGAAAAAATATATCTAGTTAACTTCTTCTC
GAGTCCTTTGTTTTATGAATTTTTTGATCCTCTGTACTTCCGTTGACACA
ACACAACTGACCTCCGATAGTCTCGTCGTTGCAGACAAATCTTTCAACCC
AATACATGCAACATATACAACTTTCTCCTTCCCTTCCAACACAACACCTC
AGTTGTCATCATCTTTTGGATCGTTTCCTTTAAAAGAAGCTGTATGAGCT
TCAACCGTGATCGGTCCAAATCCCACATGTTCTTTTGTAAACACATAAGG
GTGTGGTTGACTGGATGGCCTTTCCACTTTTGATTTATCAAAGTTTGTCT
GATGTCCAAAATCACCATTAAACATTTTTGAAAATTGATTCGGTGATGAT
TCGTCGATTCTTGAGGCTCTGTCATCAGAATGATCGCCTCCATATCCTTT
GTTGAACATTGTGTTGAAATCCTCTGCTGTTGATGAGCGAGACGAATCAT
CGCCGTAATAATTGTTTGGATGTGAAAGTGGTGTACCAAACTCTGTTGAA
TGTGTTTTAAGGTCAGGTTCTTTATGGCTTTCGCTGTAACCCTTTGTAAA
CATTGCATTGAAGTTATCAGCTATGTCACTTTGAGGGTTTCCGTGGTGGA
CTGAATCGCCATAGTAGTTTGTAGGATCACCAAGTGGATTGCCTAGTTTC
GAAGTATCAGGGAAAGAGGTTGTATCATGATCAGATGGAGGGAGAGCTTG
GTGGTGATATCCTGGATCCGATCCATAACCTTTTGCAAACATATCATTGA
AATCATCTGCAACGTTGCTTGGATGGTTTGGACCGTGCATTGAATCGCCA
TAATAATTGGTTGGGTCACCGAGAGGATTTGACAGTCTTGAAGTATCAGG
GAAGGCTGAATCGTGGTAGGTGGGCGAGTCATGATGGTAGTCAGACCCGT
ATCCTTTAGACAACATTGCGTCGAAGCTCTCAGCAATATTGCTTGGCGGG
TTTGGGTGATGATATGGATCACCATAATACGCCGTTGTATCCCCGAACCG
ATTTCCTAATCTTGACACATCTGGAAAGTGCGTTGAATCGTCATAAATAG
CTGGATGGTGATCATGAAAGCCGGGGTGATAGTCTTCACCATAACCTTTT
GCGAACATAGAGTTAAATCCGTCTGCAATGTTGCTGGGGTGGTTAGGATG
GAATGGTTCGCAATACAATGTTGGAAAAGGTCTGTAGCCTTCTCCCGGTG
ACACATGGTGTACGTCGTATTGATGGAAACTAGGAGGAACTGGTGTTCCG
AAGTTTGATTCTTGATGTATAACTGGGTGGTTGAATGCTCCAAGATCTTC
CCTTCTTGGATCTAGTGGCCCTTCGTGTACGTAACCTTCATTGTGAAATG
GAAGAGGTCCGTTATCATGGAAATATCCAGNTACGTAACCTTCATTGTGA
AATGGAAGAGGGCCGTTATCATGGAAATATCCAGGGCCGTTTTCAGGGAA
AGGTGTTCTCGAAGCGTACGCTGTTGGAAGAGGATAGGAAATTTGTGGTG
TCGCAAATGATGACATTGGTCCTAATGGTTCTCGGGAAACTACCGGAACA
GCCATATACCCGTGAAATATACCATCCGTTGATTGACCACTGAATACGGG
CATTCCGCTCATCGTCATAGAGGACCAGGGACCTTGCATTGTCGCTGGGA
AGACACCGCGGGTGCCGAAGGACGGGAGGGCTGCCGGAGCTCCATTGATG
AAGCTATTCGCGAGAGGAAGCTGAAATCCAGTGAAATGATCATCAACATT
TGCAAATCCTTGGATTAGTGCTGGATTCTGAGGGTTGATTACTAAATAAC
GTTTGCCTTGCTTTTCAGTGATATAAACAGGAGGGATTTTTGATGCTTTA
CTGTTTCTTTTATCTCCTTTAGATTGTTTTGGTAGTGTTTTCAATGTCTT
TTTAACTTGTTGTAAAACGTTTTTTATTACAAAAGTAGGTACATAAACTA
GGTTGTTATTATTGTGTTTCGATTTGTCGTCTTTGTTTGGAATTAGTGAT
GCCTTCTCGATCCTTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000498XLOC_000498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000830-exon-sc0000005-1575043694:754139..755894TCONS_00000830-exon-sc0000005-1575043694:754139..755894Clytia hemisphaericaexon
TCONS_00000830-exon-sc0000005-1575043694:753476..754084TCONS_00000830-exon-sc0000005-1575043694:753476..754084Clytia hemisphaericaexon
TCONS_00000830-exon-sc0000005-1510915933:754139..755894TCONS_00000830-exon-sc0000005-1510915933:754139..755894Clytia hemisphaericaexon
TCONS_00000830-exon-sc0000005-1510915933:753476..754084TCONS_00000830-exon-sc0000005-1510915933:753476..754084Clytia hemisphaericaexon
TCONS_00000830-exon-sc0000005-1491911889:754139..755894TCONS_00000830-exon-sc0000005-1491911889:754139..755894Clytia hemisphaericaexon
TCONS_00000830-exon-sc0000005-1491911889:753476..754084TCONS_00000830-exon-sc0000005-1491911889:753476..754084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:753476..755894 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0329107	0.0320931	0	0.0364562	0.00948522	0	1.76605	1.2323	0	0	0.242495	0.136632	0.723907	0.922515	0.97884	1.31759	1.16167	0.962015	0	0	0.195844	0	1.12998e-05	0	0.0132987	0.0293872	0	0	0.0516837	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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