XLOC_001710 (gene) - C. hemisphaerica

Overview
NameXLOC_001710
Unique NameXLOC_001710
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000025:143611..153015+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001710 ID=XLOC_001710|Name=XLOC_001710|organism=Clytia hemisphaerica|type=gene|length=9405bp|location=Sequence derived from alignment at sc0000025:143611..153015+ (Clytia hemisphaerica)
CAACCAGCAACCTTGTAtgtattaaaatttaaaatcaataaCTTCAATAC
TGACAGGATAGcacaaaaaaaaagagtttacCTACTttattttaagaaga
ttttctAAAACAGATTGGTGTAAAGAATGCATTGGTATTTGTTAACAATA
ATTATTATTTCATCCTACCAACAAATGTGCTCCACTGAGGAGACAACAAC
GAATACCTTTGAAGTTACACGAGGCTTCGAAGACAGTTTTAAATTCTTAG
AAAAGCGAGGGCTTGATTGCGAGACGTTGAAAACAGAGGATGATGGTACG
AAAAGTTGTTTGTGTATAGGTATGGATGACAAGAAAACCATGATTTTCGA
AAGAAGTAGGACGAAAACAAAGGCAAAGTGTGAAATGAGCCGCGAAATCA
TGGATAACTTCAAACACGAAGGTtagttttatcaaaaaaatataacCAAA
AGCTAGAGTCGAATCTCCTGTGTAGGATTCGAAACCACTTATTTCTTCTA
GCTGCGCGATCCACGTGGCTTTCATACACATAGTAGATTAGAggtaacat
tttgaaaaacgtaaAATACGAATTCAGAGAAAGTACTACATTCAATATAT
CATCCGAAACAGTATAAGAAGCTTTCTCCTCAAATTGTTTTCTCAAAGAT
AAATCTCgtcgaaaaagtgaaaaagtgacgtccGTCAGAGCCCAAATGGG
GAGAACTGACGAAAgttcaaagaaatatttatcCAAAGACAAAGATagaa
ttgaatgtttttttttacaaatacgATAGAAATGTTTGGGGGAGGTGGAC
TAGAGCCATTCGAGTTCAGTATTGAGATGAACAAAGAGATTGGTTTGATG
AGATGGAATGAAAATGAAGGGTGGATTGGTACATACGCCTTATACATCGC
GGGTGGAGATCGACCTGTGACAGAAAGAGAATGTAAAGATCCAAAGATTG
AAAGTGTAAGGTGAGTTATATGAATATGTCAATCTTGCAACCGACTTTCC
ATAATCTCGAACTGTTTTCATTTTAGACAAATATGCTTggctttttttta
tctttctatgatttttattttctctaaCTCAAACTTTTCCTGTCTCGAAT
GGCTCCTAGTTTCTTCCTAGCCTTTAAAGGTGGTTCGAAGACTCTTAGAA
ACCAAAAGTGTCATTGCTACGATATTATTTTCCTTTAGTTGTAATAATTT
GAAATGGGCGTCCTGCGACAAAGTAGTAGCTTCAGATTTCACGATCACAG
AGAAAAAGACTGGATCCAACCAAGCTCATTTCGAATTCCAGGTAAATGAA
TATATACTGAATATTGTTTCcaggggggtacttaggcaaatagagggtac
ggtatgtgccgcccttaacggtaccttttttggacttcaaaagtcccact
aagggtcggaaaaattgaaaaatttcaacttcttacccctgaaagatcga
aatttggtcaaaatttggtcaagattggtcaaatttgtcccgttAAGGTT
CGTAAAAATTCCAAAACTCtcctttgttttcttctttttagtcccggtaa
gggtccaaattCGAAAGGCGGGCGGCACctcccgtcagctcgcaaccccN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNccctagtcccccccccccccggggatatTGT
TGTGGATGACTGCAGTTTAGTCACAAAGATTTCTTTAATCACTGTTCACT
TAGATattaagtttttttcaattaatgAGTCGAATCAGTCAAGCATTTTT
AGTTCTCGAATATTTAATATAAATTATTTCGGTATACTCGGCCCACCTTC
ATAATTTAGGGATTATTAAATTTAGTTAATTGATACAAATGATCGATATG
ACATATCCCATCACTTTTAGGTCATTTCACttcaaatgaaaatcaaaagc
aAATATCAAGGACGTTTGGTAGCCCTCCAAATGTTATGTGGGATTGAAAA
GGCTTTCATGATCTTCAAGTTTCAAGGAAGGCGGGATTGTAAGCATTTCT
TCAAGTTCAACTGCTCCTAGATCCGGGGGGGGGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCtaggtccggggggggggg
tacttaggcaaatggagggtacggtatgtgccgtaTGTGAGGGCACGGta
tatttttggatttccaaagtcccgctaagggtcggaaaaatcagaaaata
aaatttcagtccaactaagggtaggagaaataggaaaattttttaacttt
ttaccaCAAGAAAGatttgtcccggtaagggtcaTCTTGGCCCTAAATAT
TCCCACTACCCCCACTTCATTGTGAAGTGAAAAGGCATTATCGTAAAGTT
GGAGTTTATAGTTATAGTTAGCAACAAACGTCGGGAGGCAAAATGGGAGG
CACGAGCCTTAACAAGCACTCTCTAATCAAAGGATCAATTATTTTAATCT
CCTAAGATACAGTACGTGATTGAGTAACAAATGATTGTGATCTTATCGCA
GTTACTGCATTTGTATATTTATATAACTAGGGTAGATGCAATTATCACAT
ATTTTAGATTCGGTAAAAAGGACATTTAGTAAATTCGAGTAAATGTTCAA
AAAGATTTATGTTCAGATAAATACGTTTTTTGATACAAGATACTGTCGTC
ATAGCTTcaacataaaataaaaaataaaaaagcttcatTATATTATAGGT
ACGAAATGAGGGCTTACTCTCTCTGTCTTCCTTAGACCCAATTCCAGATT
CACCTGTAGTCATTTCAACAACCGCAACACCAATAACAGATAATTCAACA
ACTCAGCCGCAACCTCCACCCAAAACAACAATACAAGCCTCTGAAACGAC
AACCATGAGTTCTGCAATAACAACAACTTCAGGAAGTGGTAATGGAGACA
ATAATACAGCGAGTTTTCCATCAAACACGGTACATCAAGTGTCTACAAAC
TTACATCAAACCAATACCTATGAGTAACTGAGCTTTATAAAAACTCAGGC
ATACtaaaatctttgatcgaagtttttttgaaattggtacaaTGATACCA
ATACTCAACGTGGGTGTAAATGCACCATGAGTCCTAGATCTATTATTCCT
TGTGGGTACTTTTGATATAGCGCCGTTTGACAACCTTGTCCCATGTATCC
CGGGCTTTATTTATGTTACTGGTAAACGCAAGAGAAAGATTTGACCTGTT
TTATCTCCACTGCAGataattttagtaattttagtaattttatGTCTAAC
TATTTGAATTTGATGATACTTGGACTTTATCAGATAAGGGTTGTTCAAAT
TCATCTATCATACACAAATACTCGCAACCATCCAAGTTGGAATTAAATAG
GAAAAGAGCTTGCAATATATATTGATATTTACAGGTGTTAAAGGTAACTC
GTGGGTTACTAGACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGT
AATGCACCCTTGACAACTTACATGATCAACGAAAATGGCACGCGTGGCTG
CTACGGATCGGTGGAAACAATTGAACAAAATTTCAAAGGTATACCTCCGA
TTACTTCCTTGGTCCATACTTGAGCTAGACTATTAAGTATTGAGTACAGT
ATATTGATGTCAAATGCTCAGTAACTAAGGAGGAGTATAAAGGTTAAGNt
ttgatcgaagtttttttgaaattggtacaaTGATACCAATACTCGACGTG
GGTGTAAATGCACCAGGAGTCCTAGATCTATTATTCCTTGTGGGTACTTT
TGATATAGCGCCGTTTGACAACCTTGTCCCATGTATCCCGGGCTTTATTT
ATGTTACTGGTAAACGCAAGAGAAAGATTTGACCTGTTTTATCTCCACTG
CAGataattttagtaattttagtaattttatGTCTAACTATTTGAATTTG
ATGATACTTGGACTTTATCAGATAAGGGTTGTTCAAATTCATCTATCATA
CACAAATACTCGCAACCATCCAAGTTGGAATTAAATAGGAAAAGAGCTTG
CAATATATATTGATATTTACAGGTGTTAAAGGTAACTCGTGGGTTACTAG
ACAAATGGAGCTGTCGCGCAGACGAGGAATGTGTTTGTAATGCACCCTTG
ACAACTTACATGATCAACGAAAATGGCACGCGTGGCTGCTACGGATCGGT
GGAAACAATTGAACGAAATTTCAAAGGTATACCTCCGATTATTTCCTTGG
TCAATACTTGAGCTAGACTATTAAGTATTGAGTACAGTATATTGATGTCA
AATGCTCAGTAACTAAGGAGGAGTATAAAGGTTAAGTGGATCGATCCAGG
AAAAATTGAATCCCTCTCCTATCTTCGGTTAGAAAGCTCCCAAGAAAAGG
AGCTCCGGATCCCCTCTGACAGCAATTACTTAACAACTCTCCTTCTGACC
CAATCCTTTATTGTCATAGGGCATGACATTTTCTTATTGGATAATCAAGT
CGTATTTTATGTATCCTGGAAAGATGACGATAAATGGCGTAatccaaaat
cacaaaagatATTTGACATTGATGGCAATGTAGTAACTTCGAATACATGT
GACTTGAACAGTTTCTTTTCTACCGAAGTTTACAATCATGACCGTTGGCA
AACTTGGAGTAATGATTATTTCAAACTTGATCCGACAGAGAATTCTTCCG
ATGGAGGAACCACCATAGGGATTGATGTAAGTAAAAAGGAGACTGGGTAA
GATTTTGAGTTGACTAGAGAAGGACGATACTTGTCccgcgggtcaaaact
gcgggttttcaatGATTTCAGTCTCTTGTCTGTTCCCACGTAGAACCCGT
TAATTATACAGATTTACAAGCTAGGCTTGCAGTGGGCCTCTAACCGATCT
TTTTTTACACTATTCTTGAATCGTATTTTGAGGGATGGTTTTCCCATGCA
TCGTTTTCTTTGAAGGTCTTGATAGACTTTACTGTAAACGACATTTCTCG
GCAGTCTATTCCAGGTTGGCACACATCTGTAATAAAAGGATTTCGTTTGT
GGTCCGTGGAAACCGTCATTCGTGACGTTAATGGCACAATTGGTACCGAA
AGctaaaaaaaaagtcaacttTAACTTCTTAAATTCCTGGTATTAAATTT
AACTGTTATTTCAGCTTTTGTAAGGTAAACAAAAAACAGGAATGTTACTA
ACTTCAAGCTCCAAAAAAGAATGTGCTTCAAAacttaatgttttttttca
ctttagaaAGATTACAACGAGAACTTTGGCGATCTGCAAGGTCACTTGAT
CAGATTTGGCTTTAAGTGCAACAACAAAGAAGTTGCTTATttgtttcaaa
agtttcaagGAGAAAGAGAGTGTAAGTTTTTCATGGGCATACCTTTGTTT
CGGATTAAAACCCATTTACTTTAAGTATGTTTTCGTGTTTACTATCACGT
GGAAACCATTCTCAAGgggaaaaagtctaatttttgGTGGAACAGGTTCC
ATGTGAATGGACTGTGGTTTATTTCCGAAGCAAAGGCATCAATAATCTTG
AATTCCTCGTAGTATTTGGTTGGTAGAGGAAGGGCAAATGTTTCAAAAAC
CAATTCTTATTTCCATTAATTAGAAGTCTAAAAATACCCTAACACCTAAT
TGTACCCTTTGGTCGATAACCCAAGAAGAAGCAAATCAAGAATTCAAATG
AGACTCAATGATTGTCCTGCCTACTACCCAATGAACACACTCGATTGATT
ATTCTTACATTTTTAGATTTACCAGGCAAAGATTTAGCTGAGCCATCCAC
CGAGGTAAGATTTAATGCCaatgtctcaaaagtatgtagatactttagtt
tagtttttgaacattttttcaacactTATTCATGCTATTTTACaaagtta
tacaccgttggaaagatatttccaaggaaaattctctaaaggataaattt
taattgataaatttttgaaaagctgaaaaatgaagaagaaaaatgaaaat
gaaaaaaaaattttcaactttttaaaagtcATGACATGaattttttcaga
atatttgaACTTTTCCGATTTCAAATCTGTATTTAGATTTTTCCTATCTT
TCTTAGATAAAAAAAGTTACAGCACTGTGAAGgtcatttttgctgttttt
ggtcatttttggccgttttaggcctacagagggCATACTTTGAGACTGAC
TCCCGGAAGATTTAGTTGATATGGCCTAGTAGCAGATATGTGAATTGTGA
TTAAAGATTCGATTTAAGTTCTGATTAAAGCAAATCTCGGCGGCGgtgtg
aaatcaaaacaaatgaaattcGACAAAACTTTAATTCTTTTAGTTATTAT
TCATTTCATTTTAGCCTTTACTGACAGGTAGCGAATTAACATTGGTCATT
GGCTGCACTTTGGGAGGCGTTGGTTTCATTGGAATCATTGTCACTCTTTA
TATTCTCTTAAGAAAAAGGTACGGTTGTCGATAAAGAAAAAGTCCTATAA
GCTTAATCTGAAAAAATGAGGTATGCAGTACCAAgctgtatttttttatt
ttgatgtttttacttACAGCTTGATCTACCAATTAGATGCTTATAAACTC
AGGGTCAGTAAATTTCTACCCTCGCGTAATAATTGAATCGTCGAAATACG
CTTCGTCCCTTCTAATATTGAAATGCATATCACTTTAGGAAGAACAGGCT
CTAAGCCAGaaacattcaaaacaaaattcacaTCCTGTGTCGTAAGCGGT
AAAGTGCACAAACAGGGTTCTAACAGTGTCCAATTTGGAAAATCCAGCTT
GATTGAAAGCGTATCTTTATAATGTCTCCTATTCTACATCGTGTATCCCT
CACTCTTTTAGGAGGAGAGATGGAAATGAAGAGTTAAAAAATGATCCAAA
GGTAATGTTTCGCCTTCTCTTTCCAGTCAGTGTGTGAAGTAGGTTAGGGA
CTTGTTACTCTATGAACTACCTTCGCCTTCTCTTTGCGTAGAGATAAGGA
AGTGcaaaaaatatctaaataatTCCTTCCCCACTACCCTCTTTCATACC
AGCCCTTATTCAAATGTCTTTAAAACCTTTTAAGAAACCGAATATGAGGT
TATTGTATGCCGTTACCTGTTTCTACCTCTAGTGGTTgcaaaaagtattt
tgaaaatttgttattGACTCTNGCCGTTACCTGTTTCTACCTCCAGTggt
tgcaaaaaatattttgaaaatttgttattGCCTCCTTTTTGCTGACTaag
ttttttcttctatttcagTTCAATCAAGAGGATGACAAAAGTAAGATGTC
GCACCTTTCCATATAATAGTGTTTAAGTGATTTCCAATTGCCATTCCAAA
GTTTCtttaactcaaacctctataacttgaaCAAGTTTTTAGTACAttaa
gttaacaatgccttaaaaACCTTGCTCGATAACTCAAAATTCCCTTAACT
CGATCAAATTTgtattccccgtgcgtgttcgagttacaatcatggacaaa
aggtttgtaaacttctgcaatatttgcaaaatacttcaatatcgatcaaa
aacaagttcccaagaggttctgggtgctttccaaacccatccaaagctgt
ctttcaaagtcacccgcTGCAGTTTAACCATAAGGGCTAACCACAAGGGC
TAggttaactggcttacaccagtatcaaaacgctgattttttgttCGTGG
TTCCCTCAAGAGCAATTCAAAAgtaatgcaacgacttcaaaagtattttt
cttaaccccccccctttcagacacattgaagagtcattttgctctatttc
tcatcatttttcactgaaatttcatttgtctacaaccttttgtccatgat
tgtatagTTTCTTCATAGCAAAAAGACCTTTCAAACCATGAACTCAAACT
TAGTATAGAAATTATCTAAAGTCGATCCTTTGACTGAGAAGCCATATGAA
TTCTAAAATCTTGCATAAATTGAGGATTAAAAAACTAACTAACCCTCATT
CCTGCATGTTTCTTTTCAGTCGTGATGAGCAAAGCTGACATCATGGAGCT
GGCAGAGCAAATCCtacaaaagcgagaaaagacCGACTTCCAAGGGTCTC
CTCGCTACGTTCCTACACATCTTCCGGATCTACCTGATCCACGCCCCCAG
GTGGGTCCCTTGTCTctaaattacagaccagaagcAGAGGATCAGAGCAA
CGGACTGTATCAAGAAATACCATACGAAGGGTTGTATTTGAAGCCTCTGG
CTGACGAAAGTTATCTTGATTTAACGACTATACACAAATCAGAGTACTCG
CCAAGTATGAGAAGCAATAAAAGCGAATATGAAATAgaagatgaaattga
aaatcaaattaatagAAACGACGACCTTGACGCTGTCGATAAAAGACGGA
ATATTttaaatgagtcaccgcgtacTGAAAGTATAGACAGCAACGTTAGT
GCTTATGAGCTTGAAGATAAATACTCGCCACAAAACAAAACTGAcacaaa
aaacgataaaaacaaCCTTGGTAAAAGACAGGGTACTTTAGAATTGCCAC
CGCAGTATACACCTGGGTTAAGGAGAAGTAGCAGTTTCTATGAGTTAGAA
GACGTTTACGCTTCGAAAAGTAAAAACGATGTCGGAATCGAATCAAACAA
ACAGCAAAGTATCGATGATATCGATAAAAAGGATATAGGTTCTGATGTTA
AAATACAAATTGAAAATACCGAACTTGTTACACCCAATTGAATCATGTTC
CCATTCATCACGGTAGATTGAAAGCGTTGAAGATTGCAAGCAAATAATTT
GATCTAATTTGGTcgattctctctaattcgattttcgaaaattttattCG
AATTGGGGAaagattcgagttatagagaatATACAAGGCTTTCCCCTTGA
CGGGAACTAAGAGTCAGTTCGaactatagaaagattcgaaagaagttcga
attagctaGAGTTCACTgtattaaaaatttaaatttcgaTAGTTAGTTTT
TTATTCTTGAATTATCTAATATAAGACCCCTTGGTATGTTGATTTCAATG
AAAAGCAATTGTAAATATTTGATGAAATATACAAATTTTATTGCATTCTA
TCGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003081TCONS_00003081Clytia hemisphaericatranscript
TCONS_00003082TCONS_00003082Clytia hemisphaericatranscript
TCONS_00003083TCONS_00003083Clytia hemisphaericatranscript
TCONS_00003084TCONS_00003084Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003081-proteinTCONS_00003081-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:143611..153015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.01	0.07	0.08	0.08	0.36	0.38	3.04	2.85	1.71	3.4	3.65	1.8	2.4	2.74	2.08	1.97	0.11	1.04	2.49	2.42	0.15	0.08	0	0	0	0	0	0	0.02	0