XLOC_001908 (gene) - C. hemisphaerica

Overview
NameXLOC_001908
Unique NameXLOC_001908
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000028:299051..309463+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001908 ID=XLOC_001908|Name=XLOC_001908|organism=Clytia hemisphaerica|type=gene|length=10413bp|location=Sequence derived from alignment at sc0000028:299051..309463+ (Clytia hemisphaerica)
ACTTGGTTAAGGTGAAAGTGAGCTGGCAGGCTATAGGGCGTTTGGCCGCC
CTTAACGCCATTAGCGCGTTCCATTATAAATGGTAGCCAAGCTACGTGAA
ATACGTGAATTTTACCTGAAGTGAAAGTATCAAGGTTTTAATAAAACCAC
GTTTAAAACTCAGAGAAAGAGTCGTCCGCCACTGCCCTTGCATTTTCTGT
TTTCGTCTCCAATATCATCAACAAACGAttttatttgaaacattttatAA
ATTGGTAAGgaatttttcagatttaaagAAATAACTGACCAATATTTTAA
TGATCTATATTTTAATTAAAGTCCCttatactctaggggctgagttaggt
cccgtatgcgcattGGCGTATAGTGATTTTTTCTtttgatcatgaaagta
tagtccttgaagagtcagaaaacgtgtgtggcgttatttggatcaggcac
aaatttccataatggcggattttagattttcgaattttaCAGTACTCACG
GCAGACATCCTcccattacttttttttttccttctaatTTTGAGTgctgc
tagtaacggcttgttactgtgccgggtgtatactcggcgccttgggcccc
gcagggttgctagtaacggctcgaatttcattcaggttaaaaaaggggta
cttttacccatattataataacattacccccgtcctttttgtcattctat
aagtatttacaaattttgtattCTGCTGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTGTTCTgttgtgcgagtgtggctcaac
ggatagcgcgctgggtttctgatcaaagacactttcatttggtgggttcg
aatcccggtcgggccgatatttggagaaagtttgaaaattcaacaaattc
ATAGTGAAGTTACAGTAAAGTTAgtagaaatcagaaaacaagtctcagaa
agtcggaaaatagaaaaggagatagagATAGAAAGGATAGAAAGAGAGGA
AGTGGATAGGAGGATGTCTGCCGTGAGTAAGAttctagattttcaaccct
tttttagccctcttgcttgaaaaaaaatatttttttgactttaaatatag
acatattatataccaatcgatcacaaattttttgctgattaagaaaaagg
tcagaatcatggtctgaaaatttcgttatctggagatatgaagcactttc
gatttcgattttttgaaatgactacctTTGCTTTggccagacgtaattaa
tcgaaccaatcgaacggtatttttaatcaaactttgacgaatttaatcga
actttgttggccaattaatgttcgactaagttcggttgtcgaactttaat
cgaatactcacaaatttctcaaaatacaaagtttgattaagttcgattac
tgaAATTGAACTTAATcggactttttttaaagagaccttgacagttcgat
tagttcaattacattaatcgaacttaatggaactaatcgaacttaatcaa
actttgtcaagtttaatcgaattaaaatttgagaaaactcGAGCAACTGA
AGGCCGCTCCACTTGCACGTAAttcaatcgcactttttgccggcctttga
ggacactttgaggaactttgaagcacccccgcTGATGCAGGTGTGTACCC
TTGCGTCCACCTGACCAGTGGACACCGATCAAACTCCCCGGAACCTccag
gggccgtccacggtggtacccaaatgaggtcatttttcccaattttcaag
cctttcccagccttttaaaggcttcggagcactgatggagggtgcttact
ttgagggagagcaaggcagagggtatctGAAGGGGTCCCAAGGACTATGG
GGGCTGTAGAGGCTTCAATTGGTCTCACCGGCAATTTTTcctggtgagaa
aggggtgtagcaGCCTCGATTGAGGAagtcatttttggcaatttttgccg
gcttttgacagCACTTAGAGGAATTTTGAAGAACCCCCAACAGTGCAGAc
ctgtactctcacatcccccctgaccagtgagcaccAATCGGACCCCCCGg
cacaccggccgggacccccaggggccgtccgcGGTGGTaaccaaaggagg
tcattttttctaattttgaccaattttcaagcctttccgcctttccaagc
cttttaaaggcttcggatgactgatggagggtgctggctttgagggaaag
caaggcagagggtatccaAATTGGTCCAAAGGGGtccgaagggctgtggt
aggctgtgggggctgtagaggcctcgattggtcccaccggggctggttcc
caaaggaggtcatttttcgcaatttttgctgGCTTTTGACGGCACTtaga
ggaactttgaaggacctcAAACGGTGCagacgtgtaccctcacatccccc
tgaccaATCGGACCCCCGGGACCTCGGCCGGGACCCAACATTTCTCgttg
tcgaactttgtcgaacttaatatgttttgtcgaacttaatcgaatactca
caattttagcgacttttgaaaataagttcgattaaagaatttaatcgaac
ttttgtcgttcgattaagttcgacaaagttcgattagttcggtaatcgaa
ctgttcgattaattacgtctggctTTGGTTCCacatttgcgtggctgtaa
catttgattggcatacttaatttacttgaaatttttggagggtcttgcct
accgttcaaataataaaattcaggaaaagttttttttctacatgaatttc
gaaatccataatagtggattcaaaattttctttcgtcacatgggctctta
ggctctgctagcctaagaaaaatattttctgagcTTAGAACCCTGCATag
tatataccaatcgatcaggaattttatgctgattaagaaaaagctCAGAa
ctatggtctgaaaatttcgttatcaggagatacgaagtacttacgttttc
taagttttgaaaacgaaagtacttcatagctcgagatggcaaaattttca
gaccagtgttctgacctttttcttaatcagcataaaatttctgatcaatT
GGTATATAGGGCATATagtatgcagggttttaagctcaaaaaatattttt
cttaggctagcagagcctaagagcccatgtgacgaaaggaAGTTTTgaat
ctgccattatggatttcgtaattcatgtagaaaaataaattttcctgaat
tttattatttgaatggtAGGCAAgcccctccgaaaatttcaagtaaatca
agtaagccaatcaaatgttacagccacgcaaatttggaaccaaaagtagt
cattgcaaaaaatcaaaatcgaaagtgcttcatatctccagataacgaaa
ttttcagaccgtggttctgacatttttcttaatcagcataaaatttgtga
tcgattggtatataatatgtctatgtttaaagttaaaaaaaacatttttt
caagcaagagggctaaaaagggttgaaaatctaaaatccgccattatgga
aatttgtgcctgatccaaataactcCACACatgttttctgactcttcaag
gactatactttcatgatcaaaagaaaaaatcactatacgccgatgcgcat
acgggacctaactcagccccttgAGTATTACCCTTTTTTGATTATGTTGG
TATGGTCTACTTTTATCTTTTGGAACAATCATTTTCTATCTAGAATTTTT
CATGTATATAGCTTTAGACGGCAATCCCAAATctcttcgtttcgcgtcgc
ccgactgCCGACTCCTGAAAATTGAGTCGGAGAGTCGGTAAATTCTTCGG
ACTTTTTGTTTGATGACCTTTCCTTTGCTCAAACATTatattattgccga
tttttgTGAGCGATTTCTAgtgcattcgcagcattttaactttgtttatT
ATTACACGTGCCATTATGTTAGAGGGGGgtcagtcgaaatttcaaaatca
ttttcaaaatgtcaaaccaagttgaatgaaaagcccttatcatcagaaaa
aaaatgaggggtcacttgtCTTTCAACCTTtagtaccgtgagaggtccta
aagccgacaccactgcctaattccgacccccaaataactgttatgaaaaa
aaattctatgtttacaaacattccctctccaagttgaacgataaactatt
gctagaactctcgaaactaaacatctaacaagatagctgtaatgtcaaga
tgtcaattaatgtaattaaaaagtgtgagttgtaaaaataattacctttt
attctggatcagttgctcatgtttaaaacgataacagttttgtaataaaa
gtgacttgtgcgggaaaaatacgaaacaacttggactggtttccatcaag
aaacaaacagactaaattgtaaaaatggcgcgaagttgaaaaaagggcgg
atgcggtagcacttaatttgaataacaaacatcaaatcaatgaggcggca
actatcatcGCCCTCTTTTTACCAcctataagtccggatgtttatttacg
gaaggcccgcaatcggatagctcttcatttaagtgtactctttgacgaca
taatattatctttactagaataggagcaaggtttcatgtaatacataata
attgtaatatacgtcgtctatttgtattcttatcatgtaatatataatat
aatgtaatatacgtcgtctatatgtatccttacacaaagtcctagccccg
caatcaagccaagtgccagtgtaaagtaatagaaaccaggcttgattacg
tagcgtttcaaaatgagcacgctcgtacacagacctcttttatattttcg
tgtgctttggaaaatcaaaacatctcgttaatttttatgatgctgttact
actgttgtcatttatgacgttgtgcaaattgcaataaaaaaatatgtttt
gttataagaagcaattattgttatttggttcaattggttcagtgtatcaa
atctctcagtttagttgacactttggtatcttcgttgcgtcacagcgaaa
ggtttgtttttattttagtttgtatctttgaaagaccccatcggctttag
aCAGTggtgtcggctttaggacctctcacggtattttttcagatattcca
ttttgaagttccatttttttgaagattcctgtTCAAAAACCTCCTGCCAT
CTTCTAGGTAACATGGGGgcactgaaatcgaaagtgttttacaaaaaata
ttctGTGCGGGAGGTTTGGGGCGAGAGTGTTTTTCTGTAGTGCGAGCGAT
AGAGAAGGGGGTCACTATACATTAAACTTCCCTTACAATGGAGCAGATAT
ATATGCTATACATGCTATACACATGTTacgtatgttatatacaaagaata
aagaaatattcgaatatcgatctcacctttgctttaaacagccccctaac
aggaaaatagcttcttcacaatcactatgtcatatctcattttatatcct
gcatcaccttgggtatgataacaattATTGATGAAAATAGCGCCAATGGg
gttatattttataaatgtttcaatatttttccctTATTTATCCCCTGCTT
TTTtctatctcgagctatgaagtactttcgttttcaaaacttagaaaacg
taagtacttcgtatctcctgataacgaaattttcagaccatggttctgac
ctttttcttaatcagcataaaatttctgatcgataatatgcagggtttta
aggtcaaaagatatttttcttaggctagcagagcctaagagcccatgtga
cgaaagaaaattttgaatccgccattatgaatttcgtaattcatgtagaa
aaaaaacttttcctgaattttattattggaacagtaggcaagaccctccg
aaaatttcaagtaaattaagtaagccaattAAATGTTaacagccacgcaa
atctggaaccaaaagtagtcatttcaaaaaatcgaaatcgaaagtgtttc
atatctccagataacgaaattttcagaccatgattctgacctttttctta
atcagcatgaaatttgtgatcgattggtatataatatgtctatgtttaaa
gtcaaaaaatccgccattatggaaatttgtgcctgatccaaataacgcca
cacacgttttctgactcttcaaggactatactttcatgatcaaaagaaaa
aatgactatacgccgatgcacataagggacctaactcagcccctaaataa
taataaaattgatttttgaagccggaactatttaaaaatcgccggaacaa
cctattttcgccggaaagaaagtatttcttgaatttcttaagctgtactt
tatattttttcatgaaattttgcacactgattcaaaatgacaatacctaa
aatgtgacagagcccgatttacaataaaaaaatttttccggctgaaaatg
ccggaaatatgctggaaaagccggttttttgacattttctcgaattttca
tccttagttttttctgattttttgcagaaagatgcgtattcgcaatactc
aaaacatgaccgagttcgatttttgagaaaaaattcttttcggttgaaaa
tgctggaaatctCTGTTTTTGCAGactttcattggattttttccttatat
ttctatgtttttctcacaaaaacattattgatagataacaatgctcacca
tcaacaatcaatgatgaatttattgcgttatgcatttttgctaaacgcta
tattttctgactgattttttttcacttttctcctcgcattactatctaac
tttcatcatcaggtaggtccattcagcatctagcttgttatttGTGCTTT
AATAACAATATCCATAATGACTCACTAGGTCTTACTTGTCATTTTGTGCC
CCCAATGTGGTGAGAGGGATAAGGAATGTTGTTTATTTTAAATATAGTGT
CAACATACTAATAATGTAAACAAAACAGTGAGTTAGATGCTGAAAAAAGA
CAGGAACTGAGCAGATTGAGAAAATTGCACATATTGGgcaacacccctcc
aacccccacctggaAAAAGTCACCCCATATGTATAGCTTTACCCCCACCT
AAAAATGGAGCAAAActcaacccccacctgaatttTAGTCCCCACCTATT
TCAAAGGTAAACTACGTTTTCAAAGATAAAATTGTCTTTATACACATGCT
TTAAAACAAGTTTCCCCATCTATTTTAACCAAATTGTTAGGTTGGATATC
TTTTAAGGTCTGATTCcttggaatttcttttttttaatgatgatCAAGAT
GACGGATTTAAATTGACTCCGTCCAATATGAAGAAAATAAACTAATCCTC
CAACATGGTTACCCTTACCTAAAATTTGGTAGCATCCCAGCCCCCACCAG
cttaaaaatatcttaaaacCTTCAACCCCCCCCCACTATTTTGCAGGGCT
TTATAATCAGTTAGCTTCGTTAGATAAAAAGACTAAATGGAGTGACAAGT
TAGTGATACTTTTTTTACCAGCTCAGTTTGAAAAGTCTGGTAAATGGAAT
GTACTCATTATGTTGATCGTTCCTTGTTTGTTATTGAATTTTGATGAATA
AGTTTACAACATTCAACTTGATaaattttgtttggttttcagttttgtga
aaaaaaattattttatatcattaTAGAAATGGCAAAGGAATTCAAACGTT
TATCAACCTCTGTACGTCCATCAAACTACAATGTGACGTTTCATCCTAAC
CTTGAAACATTTAAATTCACTGGTTCTGAAACTGTGGATATTGAGGTACA
TATTGTATAATTTTTTCAGCAATTTCAAAGGTTAATAAGGAAACATTCTT
ATTATTAACCATGCCTCCCTTTAGCTTGTGTTATACTTTCAAATCTtcac
aatcaaaacaaagatgtcTTTTTAGATGCAAAGCAAAGATgccaaaaatt
cactttttattgttttgatgagACTTGATTTGGATGGATAGCAATATTCC
TAAGTCCTTTCCATTctacttttttttctcaatgacCAAAATTCTcaact
acaacaacaacagttgagttagaatctgagaaaaGTTGCTTTGTATCGTA
CAGTGCTGTTTCCAGCTGTTTCAGCAAAAGCTGAGCTAATCACCTTATTG
CGAGAAAACCTTGCTAAAACCAAAGTATTTTTCTTAATAATGAAGATAGT
ATAACTTTCCATCccttttgattattttattcAGGTACGCAGAGACACCA
AAAGAATTCAAGTCAATTCATTAGATATTGTGATTGATGAGGCTGAATTC
CACAGTGAAACAATATGTAAGTCCCTGTTCTGCCCTGTCCTTGTCTCTAA
AATGAGCTGGAATTATGTATATTCAAATAGTTGTCAATTTCATCGTCAGG
CATCAATCAATACAAAGTAATTTTCTGTTATCGACTACTCAAAAGACTTA
TTAATAATTATTGAGACTTTGGGTAGAATTAATTGTTTGAtagttttcac
ttttcttttgctttGCAGCTTACAAATGTGCAGAATCAGACATTGTGTAT
GACAAAGAAACTGAAATAGTCATTTTCAACTTCCCAAACACCTTACCAAA
AGGCAATGCCACTCTCAAATTGAAATTTACTGGGGAGTTGAATGACAAAA
TGAAAGGTTTCTATAGAAGCAAATACACAACTCAAGGTGGGGAGGAAAAG
TACATGGGTGTCACGCAATTTGAggtaatattttgattttatgattttgt
atatttagtatatttaagTATATTTAATAAAGTCTGATACTCAGATATCA
ATGAAATGGCTTAATGTAGCCTGTCCATATCCATGAAATAAGTTTTATTT
GGTTTAATTTTTGCTTTCGCATAGGCCAGCAACCCGAGTTCTATTCCCAA
CAAGGTTTTTGACTCACTTGGCAAGTGAGTGTACCTGGCCTGGGTCAACC
CATACTGTGTGAGAGGAATAACAACTCTAATACAAGAGTGTGGATAAATA
TGTCAGCATTGTGATGTGGTTACATTCCTATGTGCAAGCTTGCGATTGCT
AACACGCTCTCGCTTTGTTCAAGTGTAATCATCAATCATGATGATACATG
TGTGCTGTGTACACATGATTAGAAACGTCTGGGGTAGCACTATAAATTCT
TTCTCAAGAGAGAAGAACNGTGCTGTGTACACATGATCAGAAACGTCTGG
GGTAGCACTATAAATTCTTTCTCAAGAAAGAAGAACTCTGTCTGGCTTCG
AAAGGAGTAGGACCAATTCCGGTAATATCTAATATCTACTTCATAACATC
TCTATATGTTTATTATAGGCAACTGATGCTAGAAGAGCATTTCCTTGCTG
GGATGAACCTGCAATCAAGGCAACATTCGACATTACAATGATTGCACCTA
AAGACCTTGTTGTTCTCTCTAACATGGTAAGTTgtgataaaaagtttttt
ttatgtatttAAATGCTGAATTAGCCGGAGCTTCTCCTTCTGATTCCaaa
taatagacgatatcggatttagataaatgcaatgcattctggtttctagg
gactctcaaaggaattataatagattagataatagattataattcctttg
agagtccctagaaaccagaatgcattgcatttatctaaatccgatatcgt
ctattgttccCTGATACCATTTTGTATTTGACTGAATTTTAAGATTGTTT
CAACGTGCAGTTGCNCTGATTCCAAATAATTGTTCCCTGATACCATTTTG
TATTTGACTGAATTTTAAGAATGTTTCAACGTGCAGTTGTCTTTTAGGAA
ATATTACTTACTTGTAACCAGTGCTATAGCTGGTATCATGGATGGATTAG
AATTAAACAATCCTTCCATCAAGTTGATTTTTAAAGGGAGACTATTCTTT
CTATATAAAGGTATAAAATCTTTAGCATTTAATTGTTGTATTCAGGACGT
CAAAGAAGAGAAGCCATTTGCAGAAGATGAAACACACAAAGTTGTCTCCT
TCAATAAAAGTCCCATCATGTCCACATATCTTGTAGCGTTTGTTGTCNAG
CTTTATCGAGCAATTTGGAAgttgatttttaaaaactctACAAGGAGAAT
TGTTGATAATCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003414TCONS_00003414Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003414-proteinTCONS_00003414-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:299051..309463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
120.57	126.5	114.22	99.92	40.48	34.12	45.42	51.85	42.96	53.97	59.59	47.91	67.45	55.98	82.6	106.19	48.77	53.21	31.76	42.18	34.49	36.61	57.05	61.42	51.17	55.01	25.99	18.33	39.92	35.6