XLOC_001986 (gene) - C. hemisphaerica

Overview
NameXLOC_001986
Unique NameXLOC_001986
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:377330..387542+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001986 ID=XLOC_001986|Name=XLOC_001986|organism=Clytia hemisphaerica|type=gene|length=10213bp|location=Sequence derived from alignment at sc0000030:377330..387542+ (Clytia hemisphaerica)
ttaggaTATAAACAgagattattaaaaaaaagttcaccAGCAACCAATAC
ATAAAGTAAATGATCACAAAATGAAAAGAATGCGAGGTAAAATTAACCCC
AGTTATAACAATGGGGCAGATGAAAATTATAACATGAAAAAAGACTTTTT
ACATATGAGTGAAATGGACTTCACAAAATTTTTATTAGACCAGAAGCATC
CCAAAGATGAAAAATCGAAAGATTATTGGAATAAAGCtttaaggaaaatt
tctaaCGTTTCTAAGTGGAAACATTTGGCGTCGTGTCGCCGGTCACATGA
AACTAGCCGTCGCTCAATGACGCCAAAACCAGGGGGACCGCTAACCAAGA
AAAAATCTGAGGAacaattttttgagaatttgaaCTCCACTTTGAACGGA
ATCGCATCCGAATGCGAAGAATCAGATTCCGAATCTGATGACGACTTGCA
TCGATCTCCTTCGCCTATCCGACAGAATAGAGGCCATCATCACCACCATG
CAGTTCGAGATTTATCAAAATCAAGCAATAAAGCATTGATTATATATTTA
TCCAAACTAGCCCGTAGTAAAAATGTAGATGATGAATTAGACTTGGATTT
CATTGAATCTCTACTCAATAACGGTGCAGATATCAATACTGCGGACCGTT
ACGGACAAACAGTTTTCCACGAGGTTGCTCGCACGTGGCACTGTGACGTA
GGGAAGTTTATCCTTGAACAGAATGCAGATATTAACAGTCGTGATAAGTT
TGGTCGAACTCCTCTTCATGTGGCTTCTGCAGTCAATTATCCTGAAATGG
TCaaatttcttatcgaaaatggAGGTAAGCATATGTATTTGATCTAATTC
CACAGATAGTTGAAAGTTCCAAATATTCCTTGAAAGGGATTGAATTGTGT
CTTTTTATTAACGTCAAAAAGAGGCATTGCTTTGATTAAGACTTATTTAG
ACAGTCGACTTTCGTCAAAAAAGGGAATTGAAGCCAGAAAGTCAACCATC
TACACTCATTTCATTTCAGCGGACAGAGATGCGCGTACGTTCGGTGAAGA
ACAAACACCTGTTCATTATGCAGCCAAAAACGATGCGGTTGATTCTCTAA
AAATGTTGTTGAAGATTGGATGTGATATTGAAGTCCGTGATAGTAAGATG
AGAACACCTTTACAAGTTGCTGCTGAATTAGGTAAGCTTGGTGACCGTTG
ATATCTCTTATTCGATTCCGAGTTCAAAGCGTTTTATTCGAGTAAGAAAT
ACTCGAATTATTGAGAAGTGCTTTAACAAGTCACCGCTGAATTAGAAGAG
CTTGATAATCGTTAACTTTCTCCAATTTGATCTTCAAGAAATAATCGAAT
CTTGGagaagtgattttttttcaccAGTAAAAATCTTAAGTAAATCAGTC
AGCTGAGGACACATTTAATAGTTTACGGAACATTAATGTGGTGTGTTTTT
AAAAACTGGATTGAAATATTATTTGTCTGAAGAGTTTAGTTAAATTGTTA
ACTTTTTATCCTCGTTCGATTTACGTCTAAACAATACCTTTACGCATGAT
CTGCACTGTGAAATAGTCAATCTGCTACTCAATTTTTAGATCGCTCAGAG
ACCGCCCTCTACTTAGTCGAGCAGGGCGCCACGGTAGGCGTTTGTGACTC
AAGTGGACTATCCGCCCTTAGTCTTATGATCGAAAAAATGCCACCTACCG
CCAAAGTCGCTCTTAATCAGTATCATGTGACAGACCGCCCGAATCGtaaa
caatatttttatttggatcTGTTGGAGCCGATTCAGCCAGGAACTATCCA
ACAATTCGCAAGAACCCCCATGCAGGtaccatttttatttattgttgATT
ATTCCCTGTTGACCACATGAACACGTTACATACAGACACGAATTATTTCC
AAACTAAATGAAGCTACCCTTTCGACTAATTTTAACCAAATGATAGGAAG
TGCCGCACCTGCAGACCAAATTTAAAACCTGATTGTCTTAAAAAGAGTAC
ATACACGTGTTTCTCTTCATAAAAACATCTAACATTTTTTAACCCTTCGG
ATGTTCGTATTaaacttttgagttttaagcctaaaaatgttctcattttc
ccccatggtatttttgtccattttcctaagaagtcgggtgttttagagtg
tctgcgaagccttaaaatgatctTAACTTGCTCCTATATTCTGGCCATCG
TAACCTTATGTTGTTATAGTTTCTTCTTattaaaaacgtgtatcaaTAGG
TTTTTATATTAAACTTTCCAGGTGGTAATCCAAGGCAAACAAATGAATCT
TTTACTACATCCTGTCTTCCGTCGGCTTCTACAAGTCAAGTGGAATCATT
TTGCACGGAACCGACACATGTGGCACCTGTTAGGTCAATTCATGTTTGTT
TTATTATGGTCAATTGTTGCTATCAGTACTCCCACTGCCAGCGTTTCTGA
ATATTCTCAACCCTTCTCTAAAACTTGGTGGCGTGTCATTCTAGAATCGC
TCGCAGTACTGGCAACTCTCATCTTTATCGTACAGGTAAATTAGAATtca
caaaaatcatttttgtagtTTGAGTTTTTATAGATTCTTTAATTTAAAAA
CCTTATTTTAGCTAACTTTGACCTTTTTTAGGCCTGATCTTTTTCGCATA
CGGAGCTATAATCAGTTTGcacattttttgagtttaaagatttttggttC
TTATCTTTAATAACTTTCATTTAATTAAACATTCTTACATAATGGAGAAG
TTATctcagataaagatttttgtcaGCTCGCCTCTTTAAATAAAAACTCG
TAGCCACGCTGCTGAATTCAACTGAATTACTTTAAACTACGGATCTATTT
TGCAGGAACTATATGAATGGCGTTGTTCAATACGAGAACACAAACGTTTA
TCGCGATGGCGGAGTTCTGAATTACAAAAAGATTTGATGTATTGTCATCC
GAGATGGCCTGAAGAACGGAAATACATTTTGCAGGAACTTGAACGGATAC
AAGGTTTAATTTTCTTCCATTTCcttgttttgttttatcatgTCGCCGTT
GCCaaatcaaaaaactttatttcgATTCGTTGTACACAGGAAaagatttt
cgatttccaaggttggaaattcaatatttttgggttggaaattcaatatt
ttttgggttggaaattttggttttataattgaaggttggaaattttagcg
attaccttaagctgatttggaaaacgtaaattacccataggttttgtaga
ataaaccaatgcccttgaaaaatcaagtgaaaaaaccccatgtagaaatg
acaattttccaaggctggttggaaaacatgactttttgggtgggaaattt
ttattttccaaacagtttgggaattgaaaaaaaggtcacaaatcgatgtg
aaaatagatatttttgtaaatttgatacctcgggttgaaaaactagactt
tttgggtcggaaatttgtgtttctcccaaacagtttggaaaaacgttaaa
aatccatgtggatattacatttttggacctttggacctaccccggtggag
gtcctataaattaacctttgtccgttcgtccgttcgttagttattagctt
tcctcatgattggctcgttagttttttctgattttttgcacaaagatgta
taactataaaccctcgaatgtgacggagcaaatttgggccaaaaaacggc
taaaaaacgggtcttttggactttgtgaaaaattaggccgttaatttttt
ctgattttttgcacaaagatgtataactataaaccctcgaatgtgacgga
gcaaatttgggccaaaaaacggctaaaaaacgggttttttggactttgtg
aaaaattaggtctttaattttttctgattttttgcatgaaagtagggtac
catcgtaggtaaaaattGGCTTAAgcagaattttgcaaaaaaaatttgtt
ggctcaaaaaacgtatgtttatctataagaatcactattaataagcatac
atcaatgttcttagtcaaataactcaatttttttatgagatagatgtttt
tttctcaggagggcttacttttaaagaatatgtgtgattcgacatgaaat
tttggttgcttggcgtgtttttatagaaaaactggccaaattcgatattt
tattataagcacattatcaattacttaggtattagcttttctcgagattg
gctctttcattctttacgattttttgcacaaatatgcataactataaacc
ctcgaatgtgacggagcccgatttaaaaaaaaaaaaaattttgggacaaa
tttgggccaaaaaacggctaaaaaatgtgttttttggactttgtgaaaaa
ttggatcattaattttttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtttttatagaaaaactggccaaattcgatatttttttataag
cacattatcaattacttaggtattagcttttctcaagattggctctttca
ttctttacgattttttgcacaaagatgcataactataaaccctcgaatgt
gacggagtccgatttttggaaaataatttttgggcaaatttgggccaaaa
aacggctaaaaaatgtattttttggactttgtgaaaaattggatcattat
ttttttctgattttttgcaggaaagtaaggtaccatcataggtaaaagat
ggttcaaacagatttttgcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgaaagaatatttcaagagcatgaaattttggtttc
taaacgtgtttttttataagaaacaaacaactaattttaatagatcgtca
ctatttgtgttctgaatgaatgcttaatggtcacgcttatgtagatatca
attatatatgtgttaaatgcataaccaggtaggtccataaaagtatcact
tgtttttaattGAGACTCCTCCTTGCAAAACTAGACTtttggggttggaa
atttgtgtttctcccaaacagtttggaaaacgttaaaaatccatgtggat
atTACATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGACTCttccttggaaaactagacttt
ttgggttggaaatttgtgtttctccaaacagtttggaaaacgttaaaaat
ccatgtggaaaatacatttttgtgaaattgagactctttcttggaaaact
agactttttgggttggaaatttgtgtttctccaaacagtttggaaaacgt
taaaaatccatgtggatattacatttttgtgaaattgagactcttccttg
gaaaactagaatttttgggttggaaatttgtgtttctccaaacagtttgg
aaaacgttaaaaacccatgtggaaaatacatttttgtgaaattgaaactc
tttcgattggaaaactagacattttgggttggaaatttttgcttctccaa
acagtttggaaaacgttaaaaatccatgtggaaattacgtttttgtaacc
attttctgcgcatgtcttttgagaaaaccacaagcgatttttcgctcaaa
actgttttgatgtatagctaacctagatattaggttataatgtgagcagt
caagctgtaagtttccgtcaggtgaggcgttctttcggagcggcctcggt
caatcgcagtgagttcgaacagtgaagcacatagggtactcgtgtcatag
tttcaaatggtgccctgctgagctgtgtgagtgatctaagatcaaccacg
tatctgtgcgaacaataacgagagattgaccgggagccatcgagcctagg
ctagcgagtgactgttcacaaaaataaaaaccttgtttaagatctctttt
tccacatctctgccatcactttttggattttggcttttttcaaccggatt
ttcgaaaattccaaccttgtttagcttggattttggcttttttccaactg
aattttaaaaaattccaaccttgtttagcttggattttggcttttttcca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNatggaaaatgcaaaatttccaaccttggagaatgtcccacatttcc
aggttggattttccattggattttatcttttttccaactaagaaaacttg
aaatttccaactttggaaatcgaaaattttttcctgtggtaTAGCTACGG
AATATTCAGTATTTATAGCCTGGTAGATTTGGAGAAACTCGGAAAATATA
AAAAGTCCATGATAAAGCATTATTTTTAACCAATAAAAACTCCCATAAAT
CTGACtcaaattcaattcaaattcaatccgTGAAGCTTTCCCTCTTTCAA
AGTAATCAtacttattttttttgcaattcatcaTATTATTTCAGGTTCGC
GGATCTCCTATTTTGCTGACTGGTGGAATATCTTCGATTGGATTGTTTAC
ATCTGGATATCCGCTGGTGTTGTAGTCCGTGTTATTGCGTTGTGTGGAGA
CGAAGAAGCTTCGAATATTCACCGAGAAATTCTGGCATTGTCCATGATCG
TGATATGGATTCGTTTATTGAAAGCAATGAGAGCTTTCCAAGCACTAGGT
AAGATCTGGATTTACATAACACCCCTGTCCCAGCTGGtgcataacgttgt
ttcaacgctcatctaacgttatgatgacgttgtgaacgttaaaaaCTTCA
CGGACctaatagctgattggttgtaagtgacgtaaaatcagtcaatatgt
cactttcaaccaatcagctgttgggtccgtattttagttcgaataacAGA
AACGTTCGAATAAAAAAGGTTCGAGTTAGAGAGGGTTGACTGTATTTTCC
TCCATGTGCTTTAATCTAGTACGCATTCTTAAGAGAAATAACAACTTTGC
TTATTTGTATATTCAACTaggtaaaatttattttaggTCGTTTTCCactt
tttatgcattttggttgTACGATAACTGCAAATAATCCTGCCCGGTGGAT
ATTTGTGAATATGATTAAAAGATGTGTAGATGTGTATTTGCAGACCACAA
AGTTCCTAATGATTATTATATTCTATTCAGGACCATTCATTGTGATGCTT
GGACATATTTTACGTGATACATTACGTTTTGGCTTCCTTTATTTCGAATT
CTTCATTCCTTACATTATTGCCTTCTGGATGTTGTTTGGTGGAAGCGAAC
GCGCGGCCATTATGGCGCGATCGAAAGAGTCAGGTGACGGATGGGAACAA
GTGAACGATTTGATATACTCTGTATGGCTTGTCACCGTGGTTGGGGAGTA
TGACTTTAATGCTATTGTCTCTGTTGATAAACTTATGGCTCAGATCTTGG
TCGGTACTTTTACTGCTCTGTCCGGAATTCTTCTCCTGAATTTATTCATT
GCTTTGATGTCGGACACCTTTCAGAGAGTTTATGATAACGCCAAAGCTAA
CGCCCTCATGCAGATGGCGAACTCTATTAATACACACCAACAGAACATGG
GAGCGAAATCAAACGACCGATTCAGGTTGTTCATTCAAGGGAAATGTGCT
CCTGAGGtatgttgtttaatttttcttttctttttttttgatagcCGTGT
GAGTTTAGAGTCTATCTAACAAAAAAATAGAacatagacaaaaagaacga
caaatttcataaagaacgacaaaaaagaacgacaaatttcatatttcgcc
gtccacaacgtctctaattcgaagaaaatctttagtcccttgaagatcga
ataagagagagagagagtcaactgaaCTTAAATTTATCGAAAGAAAAATT
AGGCTGCCTTTCTGCACGTATATTCTGACAGCAGGTAAAATGTGTAGAAG
TAGCAATGTATGGTTTCGACACGAAAAGTTGAAACAGAAGTGCGTTTATT
TGCTTTTGGAGAGCTTCTAAACGACATGCTTGATGTTTTATCTCCCTAGG
TTTTATATTACGATGACGACGATAATCAAGAAGAAGGAGAGCTTCAAAAA
GTCACCATTCAAATTAAACAAGTAGTCGATGAAATCAGGGAAGAGATTGA
AGAAAAACTACCCTCTGCAGAGACTATAAATCAAATGCAATCTCAGGGTC
TGCAAAAGTTCGACGAAATGTCTGTCCAGTTTAATCAGCAGGCTCTCAAG
TATgaacaagaaataaaaacaatgaacATGAAAATAGACCGATTGACTGA
TCTGGTCACTTTAATGCTTGGTGGAAGTGATAAGGCGGCCGCCCTATTGA
GAGAAAGTAAAGAGGGCGGTACGGCGGAATCACGACGAAAACTACCGtct
atttttgatttgaaaccAGGTAGGTTTCAACAAACGCCACAAGACAAAGA
ACAAAAAGACGACGAGAAGGAAGAATGATAATTGATTGTTTATAACACCC
CTTTTTTACAGATCCACTTGGAACCCATCTCAcaggaaaaattggccaaa
atgtcGTCCCCTGTGGATAATTCTACTCTATCTTTTTCCCTATTGGGAAA
TTATCACAGTGAGCGaaccctcactgcaaaatatgtaCTGTTTTTTCCAT
CAcgactgaattttctggctcgaaagcaatggaattcaaatccccagcca
taaaaacatggaaatatcaatccccattgagttttggtctgttattttta
cccccaacTGGCTGAAAATATCCTATCCCGGGCGGGGGggaggggggcac
tcgattttgaaaacgaccgtacgttcggccaaaaatcaggtctctaaaat
cggacccttacagtgctccggtaggtcacttacctgaaATGCCCCCCCCG
GATCCTAcctggtctgtgagaaggggatgccTTACATATTTGAGATTAAA
TTATTGAAATGCATGTGGTGGTCGAATCTGTACATATTTGTAAGTTTTCT
CAACGTTGAAAAAAATCGAGTTTGGAATCCGGGATCAGCAATAATGAACA
CTAGTAACAATTAACCTTTTTTCAATACATATTTAAACGACAatgtttaa
aacaaaagataaaaataatttcagcTCACGGTTGAATCGACTCAGATACC
TCCATAGTTAGTCACTTTTGGAACAATTGAAGACTTAGAGAATATACTAG
TCATCACCCGGTGTCGCACTCaccgaggagtagataagcagaacgcatca
taagccctttggataGTACATAATTATATCATTATTAGTATATGTAGACA
TTCCTTGATTTAGGGGAggaaaatattttagattttatttttttaacact
attttatatttttaccacggataatattatatattttcgacactgaaaaa
tagtttttttatgttgttttttttacaagaaagtCACTAATTAATTTAGA
TATGTATATATACGAATATTTAACATAAAGTATGATGCGTGATGAAAAAA
ACTGACTGTAATTATTGATTGGTCGCAATCAAAGTTAAACTTTAGCAGAT
TTTCGGAATGGAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003558TCONS_00003558Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003558-proteinTCONS_00003558-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:377330..387542 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
TRPV1transient receptor potential cation channel subfamily V member 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43	1.49	0.96	0.62	37.78	28.62	14.95	16.19	6.04	10.44	7.28	6.53	3.04	2.66	2.44	3.56	5.22	4.06	3.27	4	4.9	5.06	3.71	4.36	16.91	14.61	9.62	8.35	4.29	3.95