XLOC_002099 (gene) - C. hemisphaerica

Overview
NameXLOC_002099
Unique NameXLOC_002099
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000031:821071..827809+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002099 ID=XLOC_002099|Name=XLOC_002099|organism=Clytia hemisphaerica|type=gene|length=6739bp|location=Sequence derived from alignment at sc0000031:821071..827809+ (Clytia hemisphaerica)
aaaagaagaaaaatggtCGGGCGAAATAGAAGATTTTGGTTAAAGATTGC AAGTTTATTTTATACTAAGTTCCAATCTCTTGATATTTTACTTTTGATGC TTTGTCCATTCATGTCTGTGTCTCTAATACAGGGTTTTTCATAGCTTATT TATCAACCTTGGAATAAATAGGTTCTATTTGAGTATTCGTGGTTTTTATT ATGcaaattgaaaaatgttgcgatctgattggtttaaatttttcttataa aataaaaaggttCTATCATAAACTTGTGTCtgcattttgattggcttagc AGGAGATAGAACCTTTTTGTTCCAAGCAATATTCCCAATTTTTCTTCCAG ATAGAAccttattattttgaaaatttcatcttttcGATTTGTTTTCATTA ATTAGTACAGTGGATGACAAATTCACCCCGTCAAACTCCTTACcaactac tcttgtctcccgaatagacgggggggggtctgaataagcaggggggtagg aaaatttcctaaattctaataagcgggggNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcatggttacttttgt cttcgctgattgcgcgatgaatagaatctcgattcgtcggcacagcgtaa atatatgattttgagctgtgcttttcacggtaggaCCTACCTACAATGta agaaaattgaattattcgaatttaattagcagggggccttaataagagcg gggggatgggatttttttctcttaacaattagcagGGGGGCGTCTATTTG GGAGACAAGAGTACGCGTATTGATGTATACTTCCTTAGGCCAATGTATCT TTTTAATTGTCTTGAAGCGATAAAAGTCAACGTTCACCCGCCAAATTTGA AACACcaaatttatattcatttaactTTATATAATGATAGTTGAagcagt aaattttttttttaattttataaatttcttttgcAGGGGTTGATCATTAC TTGTTTATTGGTTCGCGTCAGTGCTGGGAACGGTAAGTCCTTTCAAACTC GTTCCCACTCCCTTAGTTCTGCTTCTTCACAACGCCTTGTGAAAGTATAT CCAACTTTTGGATTCAAATCTCTGCTCTAATTTGAAATACACaacaataa aaatgtttttttaaatcaatcaaatcGATGTAAATATTTATTACTAATTC GCTGAATTAACTCcagaaaattttatgttttttgggaACGTAAAAtaatc ctaccaaaatcgataCAATTCGATTATTCTTCGTCTTTCTATAGTACGAT GTATTATGCGGCCCGGAAAAATTGTTGGCGGAGGCGTCGACCGATGTTGC TATACACCCGCCACCTGTATCAAGACCTGCCGTAGTGATATATCGGAAAA GAACTTTATCGCAGTTCATTTTATACCTAATCGATGCTATTGCAAGTCAT CCGTCACAATGATTGTAGCAAATACCACTGTGGGAGAAACATATTGTGTT TTTTCAACTAACAATCAAGGTACGCGGTTCTTTATtataacatttttgaa gcctttgatgttcttaatcttaaaagaaaatgttctaagcatgtttttat tttcactattttgcgagtatttttgaccattttataagaaatcaggtgtt ttaaagtccgggaagccttcaaatgttcttaacttgttcttaacattttg gccattgaaccctttatgttcttatatagtttgctcttataaaaaacgtg gtGTATGTTATTATTTTAAGTTTAACTGTAGGTTTAGCAAAGAGTTAGAC TGCACGCATCTcctttgatatgttttgatatagaggatgcgtatcgtgta taaaaccCCCGTCCGAGAGTTATTCCCGTCTttgttttttgagttttagc aACTTGAGTAGCTTGATtatagcatagtataagaaagccgcggctggaat atgtacagcattgtcttttcagttaattgctgttccatctctgtctccga gctttataagaacaNctttcctttacaatgatttgaTAATGCAATTGTAT TATCAAGggtatatcattaatgtctaaaacacaCTGAGAattaagtatta acgacaaaccaatgaAATTTACCGTTAAAGATGCAACATTACTGATCTCT TGATaaaaaatagtcatcaaatacgacagagatagaacaacagaagttca gatgttatcattccagccacggatttcttatactatgattatAGTAAGAG ATATCTTCaagtttcattaaatttgaatttttaaattttgaatagTTGGA AGTTAATACAATTATTGGATTACTaaatctttttaagaaaattgaaacag gttaccccaaattttGGGGTAACTCTGGGACGGGGATTATATAAACGATG AGCATCCACTgtatcaaaatatatcaaagGGGTCTAGCCTcaattaagaa caatagaatgctaagcataatgcgagcctgatatacatgttttttcttat ataagCATAACCTTCATAAGTATATGCAGGCTCAGtctttggtacctaaa caatggctctattgtttgaatacaatagaatgctaagtaTAATGCGAGCA TGATATAGGGGAGACACTTACTAGTGGGGGCGTACGTACGgagtttgcga tttccgaaataccgatagtagttttgccaaaatttccgaaattccgtaaa aaaatacttgcaattccgatatcgatttttttgggtatttttcctcgttt tgactaatttttcatcaaatttgatttttcatgtatgagttccgaaaaag ggggatagaaactttataataccgaaatttcgaagcaaaatttcatgaat ttccaataccgaaacaatttcagaattccgaaacaccgaaggaattttgc ccgatttccaaAATCccgaagaaaaaagatttccacaattccgaaatacc gtaagTCCCCCTTACTACTGAAGCAACATATAAAAGTTTTCAGtgatttg tttttcatttcttgtTTTAGTTTTCTCTGTAACACCCGTTAAAGCCGTTC CCGGTCAAAAGAATGTGCAAGAAGGGAGTGAGAAAGACATTACATTCCAC GTGTCACTTTTCCACCTGCACATAGATAGCGATAAGAGGATAAGAAATAC GCTTTCTTCAGATAAAgatcaaaatggcagaaaagGTAATCCATGCATGC TTGTACCCAGTACTTTAGGCTTtcttttatgattctgatacaCGTTGAAG TCTTCGGTGTTCTTAAGTTAACttaattttagtgaaaattctcgacaaag aaattttttggTCAAATCTTCCATAATTTGATCActcttttcaaattatt tattttttgttatggGAACTATATACCACGCATGTCGTCACTTGAAGTAC TTTTTCAGGAAAGTGacatcaaaaatcttgattAAAAACGATTTTGGAAG ACTTCCAATTGGATATAGTTGaattaactcgagaaaatctaGGTCAAAGA TGTCAGAACGTAGCgagtacctcaccaaaaactGGGAATTTTCATCCCCG TTTTgattagcctatactagacgtcacccggtTTTTTTAACTTCCCACCC AGTATAGGCTAGTCAAAACTGGACTTTTTTGTGATATTTGACGCGTCAAA AAGAGTTCAGAATTGACGTCTTTCTTGTTTGATAGGTTAACCTTTTACGG TGgcaaaaaatctattttcttgTTTGCAATAGGACATTCGCTGCACACAG AATTCACATTTGCCGACATCTCTGGGAGAAATAAAGACAGTCCTCAAAGA AATTATGATAAAGATGCAGTTGCAGGATACCTCTACCAATTTGTTGGATT TCCAGATACCGCTTTCCCTTTACCATTCAATGGTGCCATCCTGAAAGCAG AATCAGAAATTAATGTAAGGATATAgtttttccaacttttttttgaaaag aaccagttaattttggctttgaggttcacctcttttatattttcgtgatt ttcaggcttgaatattcttaaaatattcttaaaattctACGCAGCTAATA GACTGGGAGcatttgactgcttttacgtcacttccaaccaatgagctatt gggtggaacggaagacattgcagtggtgcatatcatgaatagcgctctct ctaacttaggttggaagggtagaattttaactttgagttttaatataaaa cttaggaccttaggatctgaggatccaaaagttcaaaaatggtccaataa ggctcataaaATAGGCTGGAAgtctattataaaaaaaaatttaagcgGAC CCTTGGCTATGAAACTGAAAAAGCCTGATGGTGAAACGATCGTTCTAACT TTTACGATAGTAGTGAATTCATAAATAAAACCGGGTGTAAAAAACGTCCA ATGCGGCTGAAACAAAAACGAGTTTTAAGACAGTTCTTCTGCTCGAATCT TTAACCAGTTCTTCTGCTCGAATCTTTAACCAGTTCTTCTCCcgattttt gcaattttccaagaaaatgtggaatttttcctccaaaattgaccaatttt gtgccaattttaccaaaatattggccttttatcacaatttcctaccctta cagtgcatttcagtgcagttttgtaatttcctacccttacagtgcatttc agTGCAGTTtcgtaatttcctacccttacagggcactagctgaactatga aaaacctacccttaagggccgaacgtctggtaggtcatttgccttgagtg ccccccccctggggTTCTTCTACTCGAATCTTTAACCAGTTCTTCTGCTT GAATCTTTAACCATTTTTTGTGCTCGAATCTTCAACCAGTTCTTCTGCTC GAATCTTTAACCAGTTCTTCTGCTTGGGTTATTGACACTTCTGCATCTAC CTTCTTTGATTTTAGAtttcaaactaaatttttctccattttttctctat tttttcaacttttttcacagtGGAATGGCTTCAATACAAGTCTAACGGAA CAAGAAAGTTGGTTGACGTACCACGTCTCTCCAACGTACACCGGTGTTCA TACTTTGGTCCGCATACGGTACAATACCATAAGACGCGGAACTCAAGCAG TACTTGTGGTGTTTTGGGACGAAATCGAGTTCAGCTGTCACATAGGGTAT GTTGATCAAAATCTCCGTTTAAAATCTCCATAAATCACTTTCAGATTTAC AATagagagcaagtacgtcggaaacaagCAAaagagtgcaacgctcgtta aaagacaatgaaattacaattagaaatctcttcctctgataagttcgaca tggtctaaaaccgcctgtGTAAATCGAACATTATGGAGAATTCGATTTAT AGAAACAAAAAACAGCTTCCCTTTAAGAAACCTGAAAGACCGTTCGAGTA GGCATATTCtgctattttcaaaaatttgcggTAGCTTCGATCCAGCTTTT GCATTAACCATTCTCACAACAATGAAACATCAACCTTAGATCAGCAatac tgtgaaaaaaattctaaagaaTATTGTTTTCATTAAAAGATATTATAAAC AAAGTGTTCAACTGATTGACCCCTATAATGCGtgtttttgaagttttcaa GCAGAGACAAACTTTGTTATGGCTAAAACTAAAAACACTGCACACCTTTT TGAAACCGACTTTAGAATTCAAAGACAAACATACATTTGATTTTTAGGAT GTCTACGTGGAGCATGGCCTTCAGAATGAAAGCCTCCTCTTGGAAACAAA CAGCGAAAGATGTCAATATTCGTTTTTATATCGCCAAACTCAATTTTAAA GCATTTTCCTATCTCGTTACTTTTAAGTATACGTCATCACAACAATTGGA CAATGGTGATTGGCTGTTCAAGGTAttgtttaacaaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003765TCONS_00003765Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003765-proteinTCONS_00003765-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:821071..827809 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13 0 0.05 0.05 0.12 0.32 0.17 0.1 0.8 1.08 0.35 1.03 0.2 0.36 0.02 0.03 1.19 1.29 0.23 0.38 3.78 3.22 1.63 3.94 3.79 5.52 1 0.13 0 0