XLOC_002199 (gene) - C. hemisphaerica

Overview
NameXLOC_002199
Unique NameXLOC_002199
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000038:869998..880238+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002199 ID=XLOC_002199|Name=XLOC_002199|organism=Clytia hemisphaerica|type=gene|length=10241bp|location=Sequence derived from alignment at sc0000038:869998..880238+ (Clytia hemisphaerica)
aacgttcacttgccaagtgaactgccgtgagtgggaatcaaaccctggcc
tcctgcacagaagccaaggtcgactaccactataccactataccatatag
accttttttcaaagaggccaccctgttgaataattatgtagtccagcaga
aaaacaatgatacatccatgcataattattacaatatNCGAAAGTTATCT
CCTTCATAGAATGCTATAGGTTCAATGTTTTCATTTCTTGTTGAGATAGC
AAAAGAAAGTGGCGAATGTGTAAAATTTGAACTTTGGGtcaccaaaaagt
aaaaattcttACGCCTGTATAACTATTTTGGTTTGAAACGTCTAAACATG
GAAGGTTTACGAGAGCAAGTTATGATCAACCAGTTTATTATGGCTGCTGG
ATGTGCTAGAGAACAGGCGAAACAGATCTTACAAGCATCTCAATGGCAAT
TCGAGGTATGATAGTGAAAATGCCTGGTTTGCATTTTTCCCGATtgatca
ttttatcaaaaatctcCTTCATTTTAGGTTTTTCTCTTACATTATGGATT
CCCTTACTTAGAAACTGCTTTTTATGTCTTTAGGCTGCGCTGANAGATAG
TGAATATGCCTGGTTTGCATTTTTCCCGATtgatcattttatcaaaaatc
tcCTTCATTTTAGGTTTTTCTCTTACATTATGGATTCCCTTACTTAGAAA
CTGCTTTTTATGTCTTTAGGCTGCGCTGAGTATCTATTTTCAAGAAGTAC
CAGTGGCACATCCTTCTCACAGCGCCGTAAGTTATCACATTTTTCAACCA
CGTTTTTGCGATATTTCACTTTGCCGAAACCTCGCTGCAATGTTTACACC
ATGTGATCGCTATTGTCACGTGACTTTCATATATGTAGCTTAGTGGAGAT
TAGTCATGTGATAAGTTGAGAATCGTGTTTGTTTACAGTTTTGGAAATAT
TGTCTCGCCTTCACTGGAAACtattttttgtcaacaaaacatttttttaa
ttttcacaataattcaactattttttttacaaaatgtttTGGTTTGAACA
TCAGACTTACTTAGGGATTTGATGAGTGGTTTTCGTAGGGCCTGTGGTAT
GATCTGGAAAGTGGTGTTATGTAAGAGAATGCCACCTTATCATTGTCATT
CTTGTAATCTTGAGAGTGAGATTCCACttcctggattttttttaatgtac
aatgggataaacttttgtggggacttaattttgggtgtggcactattggg
tggcaatattatCACAATTTTGTGACtcttactgtcaaatcatgcatgtt
ggttgttgaaatacgcattatttgcgcttctgctttgatgcaagtaacca
tagACCCGttgcaatgttttgatttttcgcgTTTGTATGCGCGTGCGCCA
AAATAGTTACGGTTTTTCAGAGGCAGAAAACACGAAGCGCTTGCTGGAAA
AAggcagttttgattttattattcaaaatctcttcatcggaatttcatga
aattttagtATAAGAATCCTATATAGTTATTAgataacatactaaaattt
ctattcaaaattccttctagatcctGAGAAAATTGACATAAACTGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCAAAAAtgaaatgttgttttaaaacaaGTACATAC
CCTAGTTAGTTTAATAGgtttattcattttgaaataagtcgaacaacaaa
aaagtactgcaagcaaaaactttttttcaaatatcgaattccttccgtga
caatttcaagacaaaaagttttttcaccagTTTAATGCAAGTCCACTATT
CTTGATATTATTGCAAGTTCTAACTATTGGTACCCcctaacaaaaaatga
aattacattCCAAAGCAACCTCCTTCATATTCACTTANNNNNNNNNNNAt
tgaaatagtatttatttgacatattttgagttttgtttagaaaaatttcg
cggatgaggtcgttccaaatttccattgggacttaatttcacggattttc
gcggctgacacccaaatccgcgaaatttaatcccagtgaaagtttatccc
attaaagtatggaAAATCTTGTCTGTGACATCTGAACTAATTTGCCATGA
CAAACGTCAATTAGACATTAAAGATTTTTCCCTAATccttttttaaaaac
agagATAGCATTTAAAAAGGGGCTGTTTAAAGAGACTCAAGGACCCCGTT
GATAAGATCTACATGGAAAAAACAGTAGGTCatttattttgctttaaaat
gGCAANTATGGGTCTAATTTATTGCAGGAGAGTGTCCTAcaaggtttaga
accattgggaaccagctcaaccctgtatggagctccgaataagcttaact
aaggctccagtacagcgctgtaagcttacagtgtaggcccaggcggctct
ggaggcctaaaaacctgttttctggcaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgtgctaattagagcctttggaagtagc
tcacttgctttcaaggttgcgtttttacgttttttgcttaaaaaagcctt
aaaaacgcttaaataGAGCTttttaagcgttttaaagctattttagtgaa
aatttgtcggttctgcccccttcgctggactttaatgggtctagtCCATT
ACAGGGGAGTGTCCTTCAAGGTTTatgaccatttggaaccagctcagccc
tgtatggagctcagaataagcttaaaactaaggctccagtacagcgctgt
aagcttacagcgtaaagcCCAGGCGGNTCCCTGAACGTCAAATTGGTGTC
CATTGAGGAAAAATGAGTTAAAGTTTTTTCTGCCAGAAAAGTGGCAGTAG
AATTTTTATTTCTAGAAATCTTAGTCAGAGAAGTGGAATCTTACCCAAAA
CAACTGTACATACTTGCTCTGGATGTGAACAACATGATAGGCTTAGcata
aagatttcttttgtctTCATTAGATAAGAgtttaccgtaagttggtctaa
tgtcaacatacCCCATCCAATTTCGACACtgttctttagagataggaata
ataggaaggtttgatgtcgtaagttggtctaatgtcgacataccccatct
aatttcgacacccttctttaagtTAAGAATGATGGGAAGGTCAATagggc
caaattgaaaagtcgtcaaccaaaacacaaaatcaaaaatcttacaaaca
aaataagtaactgtgattttttatttaaataaccCTNacaaaactactgt
tcctagctggttctaaatcctctaaatcgcttcagcaccatggaaatatg
ctaattagagcctttggaagtagctctatGGCTtgcaaggtcgcgttttt
acgtttttttgcttaaaaaatataatctttcctgtaaaatttcctaaaat
aaaaatacagttcCAAGGTTTTGAAATGAGCTGAATAGTAAAAATGGCTA
TGATTCATGATATGATGTGTCACTTCACTAGTTTCAGTCAACATTTCTTA
CGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNattttaccatttttcaaaaaaagaccaa
aaaaggcTCTGATTTCCTTCCGTGACAGGAACGGGACTTCTCAATTTGGC
CCAATAGCAGCTATTGTTGGTTTTGGTAATTATTAAGGAAGGCTGCACTT
CGACAATAGATTGTAGCTCAGTAGTAGAGCATCAAGTTACGGTGCACCAA
AGTTGTGGGTTCTGCCCCAAgccaggtcataccaaagattcccaaaatga
ttCTTGATGCTTCTCTGCTCGATGCtcgatgctcagcaattaagagaaga
gaagaatcaagggtaagtgtagcctagaaatctaagctagtttgattcag
tcacttggataaatctgatggttaagttgtgactgaataactagcttagg
gacagtaaactCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTAAA
CTcacataatttgcataattattcgtcgttgacttaattcgtttcatatc
aaaaatatgaaatcacaccacacacagaacataatatcaaaacattgttt
agaatttttttattttgtctttttttcaatcttctgattggctctttttg
taagattagataaacaaactctccgtcttacagtttatgcgctccttttg
taaaatataaaatgaaattctattgtaaagtgtgccgatggagagtgaag
gNtattgtaaagtgtgccgatggagagcCAAGGAAAAATtggttcatttt
tttcaaaaagttatgttcgTGTTTTGGAAAAGTTaacaagagacaaattc
gtttcttgagtgataattttgtgatttgacataaaagtattttgtatgat
ttttacaaagctcatcgtaaaaataaccttcaacaaaataaataaaaatt
actttagactagcaggctaaaataccgtatacaaaacaatgtaatcaatc
cccccccaaaaaaacattatcttgaGTCTTGgattcgtatagctgtcact
gaaaataagaaccgacaattttatgttcttcgaaaacgaaagatgtcatt
gtctgtaaaTTCGAGCAgaaagtctcaaattcataaaacaacaagaaacc
acaaccagtcaaaaaccaagaactgtctatcatctatccattacagtata
atacaatccaatcagaatacagctaactacagcataggatctgtacaagt
actctctcttgtatattgccacatacgatagtcaatgttcaatcacaaat
ctttactttattatatttgccattctggaaacaagcaacttttgctgtcg
ttacgacgaatagcattcttttatcttcatcagttcaattcttcccaaaa
acaagagaagcactatcaggtcgggatcaggtcttgaaaactttttctga
tacagtattccaaatatatctctcggcTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNtaaaatccgtaaatataaaaaatctttaaagcgccgaaaaacgct
atattgccataagccgtgtgtcctagccttgtgaatacgggcttagttaa
ctaggctagggtaagtggagcaatccagggagaaagagtggcaccctccc
ctacctttgggtagatagctattgTAAGAAGAGCTAATAGACATATTGCT
AGTTAGGATGACATGTTAAATAATCAAAAACTGTAGTGtcaaaacaataa
tatgaaaaaattagtttccacttttaataattatgcattacAGTAATGTG
TTAATTAATGTTTTAAAGCTAAAGTTTTTTAATCATCCAAAGAAATTTGG
TCTCAAAAGTTGTTCAAATATTAAAAGGGtcaaaaattcttggaaattca
GATTAAAAGAtcatttgataatttttgataacatttagtttttgagatat
tcaaatttcaagttttatgaCATCATCAATTATGACGTTATAATTATAAA
GCACTTTTTCTCTAATTACTCAAAAGAGACAAGGCATTATTTTTATTAAC
AGGCATTTCTGAAATCTACATCCTAATACACTTCTTTTGAGGTATAAATG
ACCATGCCTAAAGGCCCAAATTTTATGCGCCAAACTTATATCCTTTTTGG
ACATGACATAAGTTACATGAgtagcactttctttgtttttttttacattt
gcCATTAGcattttgtgtgaaaaccaaaatagaaaaattcatTCCTAGAT
GTTGGCCATATCCTGTTGGTTCtgacttttctttgttttctctaaAAATT
GTTAATGGATTGCTGAAAGGGTAACTTAATTTATTATAAGACTTAGATAA
ATGATTACAAGATcattttttagttcttttttaTGGAGTAAGTGAACAAT
AAACTAATTAGATATTTAGGCTTTCAAGGATTGTACGGTTATTGAAGCTG
GCTGCAAAGTTAAGAATTTCACAGGAAAAATCTTCATCATATCGTCAATA
TTATTCATGGCCCCCGTCACCAGGGGGCCAGGGGGCcacgcccccccccc
caaaaaaaaattttgcaaagtaattttttttatttcaaaaaatctcgtat
ataccgtttagagaggtgaaataagggtgaaaagtcaaaaaaaattttcg
tcgCCCAatcatggtgggcgacatatttttttggccccctcaattcgatt
cGCACATCTTTAGTTAGTCTAGCAAGATGCTCTAAACTCAGGGTTGATCT
TACATGTGCACAATCAGCCAAGTAACAAAGTATGCATGCTCTGCCTTCAT
ATTTTGAAATGCAGGCAGATCCATTGAGAAAGCTACAGAGgaactttcaa
cttttttcaagcAGGGTTTTTTGACCCCCtttggggctttaaactcaata
tgTTAAACCAAGGCTAGGCATCAGAATAACAAAGTAGCTTACAGTTTGGA
TATCTAGGCTAGGTTTTATAATGGTATGTATCATGGATTtataaaacccg
aagggctagatgttgtgttttggctgaaaagtgtgctaaggttaggtagg
aaatctaGACCAATAGAAAGCTTctcaggttttcgaaaacaatactGTAG
CAGCAATAtcttttgcgatattcactttttttgcttggaatcTACATCTA
CAAACCATGTTTTAGAAAGGCAGGAAAGCGTCTGTTGGTGGctaaaaagg
gcactttttcttttgtttttccgCTAAAAAGACtgttttaccaaaatttt
agtgtattCAGGAGAGGCAGCGTCCGATGACCGGGcgctaaaagggcatg
aaaaatggcctgatctagcctttcgggcattacagaaatctgtgataTGT
ACCTTTTATGCTTTATTTTATCTTCTTCAGGTGGCTGCTCCTACAAACAC
ACCTGCGACTCCACCAAATTTTCCTGATGCATTATTGGCTTTCTCGAAAT
TGAAAACATCAAATGAAACTAGCccaaataataacaataaccAATCTAAA
ACGCAGTCAGGAACTCAAGTTCCAAGTTGAGAGAAGGATAAGGCATGATA
ACTGCTGCTGGTCGTTGGTTCATCTAATtgtgttttaacgttcaaataaa
aaatgacatttatGCAATGGCCTTTCTTCGTCACACTTTAAAGTGATAGA
TTGCTACGGTCGCAGCACCTGCTTGTATAATTGTTGTATATTTGATTGAT
ACCCTCCCTATCCATAATACCATTTATATGCGTAAAACCATGATTTCTGT
ATGTAAAATGGAACATGCAAAGATTGAATTTCAAACACTATCGTAAAAGA
TTATACTCATGTAAAAAGTATTCGATTCAATTTTGAAtcacaaaaaagaa
aatttttggtgtAAAATGTTATTGACATTGATGAAAAACAAACAAGCAAA
CATACACATGCATTTAAGATTGCAAATACCTTTGTGGCAGAAACATATTT
TGAAGAACACTCAGTTTTCTTGGCGTTAGAATTATATCCAAGAAATTATA
AAGATCAAGAAATGATTGTATTTATCTGATAATTAGATATTAGAATTGGT
TATAATGTTTATGAATATATTGTTATTCGTAAAAGAAAATGGTGTTCAAA
TGCGAATGAAAATGTATTGTTCTTTTacttaggctacgtcatatcttcct
tcgtttcgagcgtaaaactcctactcttcgggctatgagcactgctcttg
ttttcaatattgaaattctccagataaatcgcatgcgcact
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003934TCONS_00003934Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003934-proteinTCONS_00003934-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:869998..880238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
198.09	193.51	58.22	34.81	65.16	47.02	41.65	48.89	31.53	28.57	41.06	29.19	36.77	38.33	23.49	33.31	32.73	30.32	38.72	39	62.03	64.7	141.37	119.79	27.08	32.2	53.73	44.91	58.22	66.8