XLOC_002348 (gene) - C. hemisphaerica

Overview
NameXLOC_002348
Unique NameXLOC_002348
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000041:89711..96764+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002348 ID=XLOC_002348|Name=XLOC_002348|organism=Clytia hemisphaerica|type=gene|length=7054bp|location=Sequence derived from alignment at sc0000041:89711..96764+ (Clytia hemisphaerica)
aaaacaaagaaaaagttaaaaatgtcAGACAAAACTGTAAACAAATTATT CGATGGACTTGTCTTTCGGATGCAACCAGGACCAAACAAAGCCATGATCA AGAAACTCATTCTGGTATGGTTGCTTACTCGGTTGCTTGTTCCCAAGAGT TCAGAGAGATTTTTAATCTGTAAATTTAAAACTTaaagttttccaaattt ctttttctctacAGGACAATGGTGGACGATTTTGTAGAGCTGGGGAAAAA GTCGAACACATCAAGTAATCTTTTTGAaacgtttttatttattttttcct actCCAATGTACTTCAATTCATGCAACGTCATTGCTTGGACTAACATTCA ATCCTTCCACAAATTGAGCAACAAAGCATGACAAATGTTAGTtcgtacac ccccttctcacagacccggtaggatttttctagccagtggggataaaaat aacgtacacgtttttttttttttaagaaacacacttttaagaaacatgag gctcagaatgcctaaaaactaagaaacatctaaNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccgtttatttg gaacctaagagtagctTTCCTCAAAATGTTGACATTATGTCTTCTTTGTT TTTAGTTTAACAGATGTTAAGAACGGTCAAAGTGGAATTCACACAGATTT TATTCAACTGTCGATCGAGCGGAAAGCATTGCAACACATCGAAACTTATG AGTAAGATAAAGCCAAGTTTTCTCTGCTTGAATCCTGTTTTGACAAGCTG TCGTCATTTACTTTTTGGAATTTCAAAACCCATACTAAACACTggtattt cgttcttttttagtTTGTCCAGACCAGCAAATTCATCCAGCAAAatgaaa gttgacaaaaacCTCTTCGGAAAAGCGTAAGTCTTTTTTAACTACACTTT ACTCTTTAAAGCTTTTCCATTCGTTGGTTAAAAAGGGAAAGGTTTTATTc gtcaagtttgaaaattacACAACATAGTTTAAAGAATAGTTTACCCGCCC TTCCACCACTAGGCGGCAGGCGTACACGAAAGAAGAGGACGAAGCGATCA TTGAATACGTGACGTCACATCAAACAGAGTATGGCTCCGATGGATCCACC GGTGGAAACCTCATTTGGAAACAAATGGAGGAGAAAAAGGTCTGCTTGAA TCCAAAGTCAAACGAAAATGTGCAATGGTTTGGAAAGCCTAATTGCAGTG ACTCCCTCCAAATTACAAATATCATAGTGGGCCCCTTGAAAAAGGGGTTG AGAATTTCGCTGAATTTAAAAGAAGGAGgggcttgtgaaaatttcaaatc aaagggGTGGCTTGGACAAAAAAGGGGGGTTGATTTTTAAGGGGGGACTT GGAAGATTTGGCAATTTGCAAAAGAGtattttccattcatttttaaattt ctcaacaatCATTATATTTCCATTCATTTGAATTTAATAACCTTGAAATT ATAGTTAGAGATTGTAAGAGTTTGTGCGTAAAAGGTCGAAAAAAGAGGGG GTTGAACTTAAACCTGGGAAAAAGAGGGGGGTTAAATAAAAAGAGGGGGT cgaggaattttcatttttgagagGGGGTGAGCTAAAAGAGGGGGTGCCAT TTTTAAGGGGGCCTGATACCCCTCTGCCCACTATGTATGTTTACTTCTAC TCTCCTTTATAATGAATATCAGAAATCGCTCATCTGAATGGAATACCATT CTTTCAACACCAGCTTTTGATTGTTCTAGATCACGTCACACACGTGGCAA TCAATGAAGAGTCGCTTTCATTCCCATTTGGAACATCGAGTTACACATCG ACCAACTATCATCACTCGCAGTTCTGgtaacaaaacaaaacctttatcTT CCCACTATTTTCTTTTCGGAAAAGTTCCTCATTGTCCCCTCATTGGAACT CTAGTTGGCCCTTCTCTTGCTTAAATTGATCTCGACAAGTTGTTTTGGAA ACATTTCTtcacttttaaaagtttttttttttttgcactttcagGAAATT CGACAGTTGCTTATGCCGTTAGCAGAGGTACACATCTTATTTTCCGTTCG AAGTCCTTTCTTCGCAAGTTAAACTCAAAACACTTCTTATAATATATATG ATATTTTTTCTCGTCCTTCAGATTCACCAATAGACTTGGTAAAAGCACCA CCTCCACTCAAACCAAAGAAGAAGTTTGAGGAGCAGACGAAGAAAAGGAC TTTAAAGAAATTGTATTCTTCCTCATCTGTTGATCCTTTCGACCAATCAC CAAGGAATTCCATCGGTATATTCATAtctcgttttttttcttcttctaaa CTGAATTAAATTGTACTGTTACTCATATTACTGGCCTTAATTTGAAACCT AATATCTGaaggaggtaatcaaattttagaaaatgctACAAAACTTTTCC CACATCATATGACAACAATCAAATGACCAATGAATTTTAACAACCCAAAA TCCGAAAAGacaaaagtcaaaacaaaccaatttcACTAGAGACACATTAC TAGAACAATTAAAACAGATTTAGCGAATAGGAACCCAATATTAAAATGAA AAGAGATCGAAACcgaaagaaaatggaaaaagtatggaaagatgaagtct gagatcaggtgcggtacttttttattttgcttgtgtAAATATTTTATTCT TTCAGATGGCAAATCGATTGGTGGAAGTTCGAGTAATAAGTCGGACGGTA ATTTTTTCAATACATTAATAAATCCCTAACGCAACAAGAGGGTTGGGCTT GAGTTTCCAAGGGTTGAACTTTGTCTGAGTTTGCCAAAGCAGTGGTTTTA GACATTAGGCCAAAGCGTTGATAATGTATTAGTGCTGAAATTAGTCgatg aaaagatttttgtcaCGGTATTTCGACCTCCATCTTTTTAGtacgagaat tttttttaaatgaattattgaaaaatttgaaaactctcAGCTGATTATCC TGTCTTTCCCTCTTTATTTCAGATGATATGGAGTTtatataagatacttt aataattggtcatttaaagtaataacaatgacgcgttctttagaaaaagc aacaaaattgaattattattactggttaacgaccaaccaaatcaaataag agcttgtaaaaactccatctcgtcccctTCATTCTTGTGTGAGCTTTCGG TGATAAAAAAAGCTTACTTTTTTAGGTGATGGGGAAACAAAGGAATTGGA AAAAGCAATCAAGGAAGAACCTTCTTCACAAGAAAATCTCCTGTTAGACG AAGATGCGACTCAAAGTCTTTccgaagatgatgatgatgatgataatgat aATGACTCGATCATTTATTCACCAAGTAACACATTGCAACCCATCTTAAC TTCCACGTGTGATAAAGAAAACTCGCAAAGCACGAATGAGAACGAAAGCC AATCACAGATTAGCCAACCGAGTAACAGCCAATCACAGAACAGCCAATCA TGTAACAGCCAATCACAGAACAGCCAATCACAGatcaaccaatcaaacat cGTGTATCCTTTCCCTGAGGATGAGGATGACGAAAATAGTTTCGATGATT TCGATCAACAACTTGTTGCTGCTGCAAATGGAAGTCAAACCAGCCAATCA TCGTCCACCAGTAGATTGAGATGCAGCCAATCAGAGAACAGTCAAACTGA GAATGAGATAGATATTGAAAACTTACAGAATACCTCAGGGAAAGAAGCCG TGCAAAGTCAAAATAACGAAGTTGATCTTTCACCGGTCGTTAAGAAAgct aagaagaagaagaaaaagaggaAACAGAAAAAGCTCTTATCGCCAGAAGA ACCTCATGAATTCAACATCAAACCTTGCACATGTAAGTTTTCCCGCTAAA AATCAAGGTGTAAACCAAAAAGACAATTCATAACACTctaattttagaga aaaataaattcaaaagatttttgaaaaatgaagttgAACGTTTTATCCTT TTATCCTAGAAACTTTATTTCCGCTATAAATGTACTGTAAATTTCCATCA AATAGTTCCATCAAAGTACCTTTATACCAGAAGTAAAATTTCTAGggtca aaagttaaaaagattcttcttttctttgtacacgttttttataagaacat ccaacaattttgaagcttttgttcgtccttttgaattttaagcctaaaaa tgttttagcatgttcttattgaCCATTTTGTAAGCATTTctgtcaatttt cttaaaaaaagcgggtgttttaaagtccgcaaagccttcaaatgttctta acctgttcttgatatttgatattttggccaccgaagccTTATATGATCTT AAATAGTTTGTactcataaaaaacgtgtacagtacAGTAGGCTAAAAAGT TTATGGGTGTGTAATTCGTTAGAATCGAAGCATGTTAAATGTTTCAACAC GAAGGATTTAGCTAAGTAAGGTTTCAAGGGGATGTAAAGGTTTTTGAGGG aataattcggtttttttattCCTCTTTCAGGTGCGAAACAGGCGGATTAT AATGAGGCTTATGAACTGATGAATTATTTCGATAATTTACCAGAAGATTT CAACTGGAAAGCAGTGCGAGAAAAAATGGGACTTTAGCTTTCACTTGAAT GGTATTTTATTGTAAATAACTTTCTCCCCACTTGTATTTATATcctcttg ttttttttaagatatcTTCCTTTTTTCATCATAAATTTCAGATTACACTG ATTTTTTATAAGACTATTGACATCGCTTAGTTTTTTTAACGTTCtaacaa caatatcaaaattaaaattcaaacattctttttcaaagaaatgatttttt ttgacaaaatgttACAAATTACTGTTTGGTCGAGTGAAATTTATTGTGTT TCCATCTTCCAAGGTACCAATTCTCGACCTTAATATTGCTTTCTTAATTT TCAATCTCACAGATTTCATAGTGTAAACGTAAAGAAGCGGGTTAACCAAT GCTTTAACGGGCGCCAAAAATTGGGCGATGCCGCCCAAAGTGTAAGTCAT TTTGGGAGAGTTTTCATCCACCGCCCACCACATGGCGATCGTGAAGTAAG GGAGATAACATACCACGACTGAAACTAGCATTAAAATTGTCATTACTGTC GCTCTCCGATCCTCTTGTTGAGCTTTTAAACGTTCCCTCTTTACTGCTGT TCGCTCTGGGCTGACGTTAGTCGTGTCGTCCTGGGTTTCGATGCCCTGGT GTGGTTTTCCGAGGTCCGATTTTCGAATTCGTTTTATAGTTCGCCAAACA AGCAGCAATAAAATAGCATTTATGGTCACAATAATGGGTTGTACTGATAG AAATAATATAGTTGGTCGAAATCCTTTGAATAGGAAACTCGAAGCCACGA GGCAGACCGTCATAATCCAGGAAAATAAATTGATCCAGAGAAAAAGTGAG TTCCAATCTTTACTCGAATACTTGAACGGGTAGAAAATTGCATAAAATCG ATCCACGGTAATATAAAAAACTGTTAAGAAAGAGAAAACACAAAAAACGA ATCCCACGAAAATTGTAGCGGCGTAGAAAACGCAAATAACTTTTTTCTCC AACACGATGACGAACAGATTGGAGCCACCAAGCGGCATCGCTAAAATCCC AGTCAGAAGATCAGCAACAGTATTGTTTATTATAAAAATAGTTGAGGGTA ATTTGCGATATCTCTTTGATGAAAAAACGCTGAGTGTCGCCAAATTGACA ATTACTGTTGGGATGGCCAATAAGATATACAGAACTGAAATTGTGAAAAA TGCAGTGTAATGCCAACCTTCCAGAATGAACTTGTACTCTAGTTTGTAAC ATTGAacaaaaacggtttttttcgTTGAGTTAAACATTTTAATTTTGCAC GTTTGCTCGAAACATTTACCGAATTcagaaatggcaaatttcgatTCCAC CAACAATCTATACCTTTAATTTGCTTTATATATTCACGAAGGTACTTTTC GGTGCGATTCCTGTTTCTCGCGAAatcttgaattgattttttttcggtct ttgCTCAAACTGcgattatgaaaaatattttcacgtCAGACATTTTCAAT GAGAGAAAgctaataaataaatattaacgACTTATATGTATAACATTAAT ATTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004208TCONS_00004208Clytia hemisphaericatranscript
TCONS_00004209TCONS_00004209Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004209-proteinTCONS_00004209-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:89711..96764 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.52 20.05 10.69 8.59 7.74 6.16 6.12 7.71 7.53 5.32 7.13 7.58 4.09 4.52 5.17 6.51 6.12 8.26 2.56 2.49 4.5 4.54 11.17 9.71 10.76 10.48 2.59 2.53 4.59 5.9