XLOC_002359 (gene) - C. hemisphaerica

Overview
NameXLOC_002359
Unique NameXLOC_002359
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000041:397527..405329+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002359 ID=XLOC_002359|Name=XLOC_002359|organism=Clytia hemisphaerica|type=gene|length=7803bp|location=Sequence derived from alignment at sc0000041:397527..405329+ (Clytia hemisphaerica)
aaaaaaagttggtattataaaaaaaagttggtattataaaaaaaagttag
tattaaaaagccttttggcgcgccatacccgggcacgcatcaaaaaaacc
ccggactgtccggcgcataggcagggtcgtagttggagcagttgacggta
agtgAATCGTGGGGCAGCCGGATTCTGTGCACTGTGCTCACCACATATCG
CATGCAAGTTAAATGGTATGCCATTTATTGGGGGGGGGCAGACGTCGTGT
GATGTGAGGTTGACTAAGTCTAAGTTTGTGTGAAAGCAGTTGGAAAAGTG
ATGCCAAAATTGACGCCCATGTGATCAGCCAATGTTAAAGTACATCCCCT
GAATGCAACAAGGAAATCCCCGGTGTCCGGGGCAACAGCATCAGCAGGAT
TGGGTTGTTGCGTTGACATccaaataaaatgtgtgtgtgTGGAAAATAAA
AAGTGGTGAGACCAGTCTGGACATTGCGGCTTGTGCGCCGGATATCTCCG
GCGTAGATTTGAGGTTTGAGATCTGCTGCCCTCAACTTTTCCCAGTTAGG
TTGGCGCAGCTCCGGCGTAACATTTCCCTCCTTTCCAGACTGGTGGTGAG
ATCAGTGGGAACCTTTGTAAAATGGATTGCtgtgaaaaaaaacaatcaag
gCTGGGTTTTCATAGTTAGAAGGGTTAGAAAATAACAACATATAATTACG
TGAGGTATGTTAAACGAATTTGAGAAGCGAAGGTGTTTCCTGTTCCAGTG
TGAAAATTTCTTAGTTGCCACAATTCAAATCTTTCGCTACTCAGGCTACC
ATTTTTTAACTGTTCGGCAATTTATCCATCGGTTAGGCAATTTACCCAGG
AAAGAGTTACATCGGATCACCCAAAGTAccctcatgttttttttttattt
tcttatctctgatcctgtctctctcttttctgactgtctgagtttctgag
tttctgagacttagtttctcatttctgactgagttttcatacctgtcaat
catttgtccatcaatttcgaccaacctAATtatcgcaccgagtgggattc
gaaccaccaccaaagaaagaccttcagatttggaagccagcgctctatcc
actgagccatcgccgcacagcaaaaccacgcaattcataacatattatac
caaacTAGCAAAAGTCGGGGGTTATGTTATTaaaatatgggtaaaagtac
cccttttttaaacctgactgaaattcgagccgttactagcaaccctgcgg
ggcccaaggcgccgaNNNTACCCAGCAGCTGAAATCGTaacataaacaaa
caaaatggcgtcTTTGAAAATGTTATCAACTCAAACTCCCTTTCTTATCC
ATTGATGTGCCTCGCGAGAAGAGAGAAAAGAATTAAAGAACACGAATAAT
TTTTGTATTGCAGCTTGGTTATGTGTAAAGAATGTGTTATAAATCCATTT
CCAAATCGAAATAAAACATGCTTGGAATCAGGATCCTACTTGATCAATTT
TAAAGgtaaaacaaatttattttctagtCTAGCTTAGCTAGCTTGGTATG
TCTTTTTTATTCTAATATAAActgggcactgggtttgcggactgacggta
tgtgtgggccaaaaattggcttttaaaattgcaccctaccttacagtgca
gcaaaaatgagtgaaaatcatacccctagagcattttcccccaaattttc
gatccctttcgtgcaaaaaatggtcaaaattctagcatttttggtcaaaa
tatctagatttttcaagagttttctgaaatttctacccttacagtgctgc
atctctagtttttccgacccttacagtgcattttaaacatattggaaaag
gtacccttaggacccgcacatacccgtcggtccttttgcccagctgcccc
ccccccaggtggtagaccttttgctattcAGCAGGATCTCATGTATATGT
TGAATAACTACAGGGGGTTTGTAGGGATTCGAAACACCATTTACCCGTCA
AAATGTTGGGTGAGTCCTGGAATCGGGGGCAAAAAGATGTGGGATGGGGA
TGTGCCGCTTGGTTAGGGTACCTTTATTTATCTTCTCACCTCCATGAGTC
ACATGAGTCCACAGTAGGGCAGGGtctcaaaaacaacaaattaaagaaat
tagTCCTTCTTAAGGTACGTTTTTGGGGGAATTACATCATCATCTTCAGC
CTCATCATAGACATATTCATATGTCTAtggtcccattcagggtcacattt
tcgaacctcagcgacACACCCCGTCAATATTTGATATTTCCTAGCTTGAA
TGATTGCAGATTCCGCCTTGAAACAAGCGAATTTTTAAGAGTGAAACAAC
ATACattaaaacacccccttctcacagattcGGTgagatttttcagccag
tgggggtagaAATAGCAGACCAAAACTCaacggggattgatattcccatt
tcGGTCATGACTGGGGATTCGAATTCCATTGTTTCTGAgcaagaaaattc
agtgggggtgGAAAAAATACCAGAATAATTTGCAGTAAggattactttaa
tcgtagaaattttagcgagactaattttagcgttttagcgagttttccct
attttcgctaaaataaatctcgctaaaatttatccgcgcgaaatttctgg
ttatattgccttgatacatttttatcaataggaagggtttcagtgcgaAA
AAATGCTAGAACATAAATTCAATCAATAATGTTAATacaagtattcgcta
aaatttatccacgcgaaattttttgaaatcgtgattcgctaaaataaatc
caaaaaaaatcaagattttcctgagtCGCTattatacgctaaaattagtc
tcgctaaaatttctacgattaaagtagcataaaacataaaataccAAATA
GTATGTACGAAAGGTAAAACACTcggagaaaaaattaaaattaaatttaa
aaaaatcattgaaatgaAACACAAAATAGTTAATGTTAATCGTTTCTGAG
AAACTTTAATGGTATTTTACAATCTAATCGAAAACGGGTTCTTATTGAAT
ACAGTAGTATACAGTATATTGATTTAAAGAGCGATCctgtaaatatattt
taaagcggtgaaaatttttttttttcaatacgtCCATTAAAAAGTGAATG
GACTTTACCTATTAAAGTAGCGATAAATGTCTAAAACACTATATAAACTT
TTTAATGAGGTCAGATAGAATTTAGAATTTCCcactaaattttaattttt
cccgccatccgccaaagtaaattcccgccaaaatttcttcccctgAAGGT
ATATTAAGAATTTGCTTTTTGATAGGTTGCAAAGAGTGTGGGAAGCGAGA
ATTGATCAAGATTTCGAATAAACAATTGAAAgaagatgatgaagaagaaa
atataaCCTACATTCACACGTGTGACAGTTGTGCGCATGTCATTGCTGAA
CATGAGTATACTTTCTCGGTGATTGATGAAGAGCAAGAATATTCGATGAA
CTGTTTATTATGTGGAACAGGTGAAGACACTGTACAACAGTTTATCCCAA
AAGGTAGTGAAAGGTGAATGGGACACCTCAACTTGTCAATGTTCGCAAAT
TCACTTCAGAATGGTCATTTTTATTAATGATAaagttttttaaagctttt
tataaTATTGATTATTGTACCTGGGgttaaatttcagcaaaatgtGATCG
TTAGAGAGACAAAAAGTACCCCCtccataggcgtagcgagatacactgca
aaatttatgagggagtgcagacgtttatgataTATTCactatcttttgat
aaaacaaagacaataattacatgtcgtaaaaaccgctctcacccataaat
tttgcagggtatctcgctacgtcTATGCCCTCAGATACGTGCTTTCCTAA
agctgacccttagagagattatTTTGACACTATGCTACTTTTGTAACCCT
AGAGAGACGTTGGAAAGGTAACAAACTGACTCAATAGCTATCTTTGCTTA
ATACCCAggtattttttattgttttgatattgttttaatttatttacact
acatgttttcaaaaaaactattACTCCCACTAGCAAAAAGAACTTTGCAA
TTTCTCACAGTTTTGAATCATAAGCAGAAGTTGCATTTGTATCATAAGTC
TTTTGTACCGAATTTGAGGCTTCTAAagatttcgaatctttcgagTGTTT
ACAACAATTCATTTGATTAGCCAAAATATACAACAAAGGGTCAGCAATTG
CTTTTAGTAGAATGAGAATCATTAAAACTCCATCTACACGTGCTCCACTG
TACAATGAAACAGCTTCTCCACCTTTGAAGATCATGATCAAAACAGNAAA
TTTCAGCAAAATGTGATCGTTAGAGAGACAAAAAGTACCCCCtccatagg
cgtagcgagatacactgcaaaatttatgagggagtgcagacgtttatgat
aTATTCactatcttttgataaaacaaagacaataattacatgtcgtaaaa
accgctctcacccataaattttgcagggtatctcgctacgtcTATGCCCT
CAGATACGTGCTTTCCTAAagctgacccttagagagattatTTTGACACT
ATGCTACTTTTGTAACCCTAGAGAGACGTTGGAAAGGTAACAAACTGACT
CAATAGCTATCTTTGCTTAATACCCAggtattttttattgttttgatatt
gttttaatttatttacactacatgttttcaaaaaaactattACTCCCACT
AGCAAAAAGAACTTTGCAATTTCTCACAGTTTTGAATCATAAGCAGAAGT
TGCATTTGTATCATAAGTCTTTTGTACCGAATTTGAGGCTTCTAAagatt
tcgaatctttcgagTGTTTACAACAATTCATTTGATTAGCCAAAATATAC
AACAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAATCATTAAAACTCC
ATCTACACGTGCTCCACTGTACAATGAAACAGCTTCTCCACCTTTGAAGA
TCATGATCAAAACAGGGGGTATGGTGAATAAGATATAAGCAACCATAATG
GTAGACCAGAAGCGTGTAATCTCTTTCTCATAATCACGTGATTCAGTTTT
TGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTTTTTTGGTAA
CACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCAGTAATGATC
ATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGATGAATATGGT
TAACGTTGGCAATGCACTGATAACCCACACAAACACCAATGCTAGAACAG
TTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTGAGAGCCATG
AAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGCAATCAAACT
GAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAGAGATTGGTT
CACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCCCCTGACGTG
AAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGGCGTCATCTT
CCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGTAGACCATCG
TGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCTTCCAATATG
ATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTTGAACGTCAT
GTTGACTGGAGTGTTTTAAGcgaatttataaaatttgataattttcaact
CTATAATATTTAAATAGAAATTTACACCATGTTATAATAAATTTATAAGT
GATGAGACACAcaccaatgaagtaaaagcccaaagggctagaagcgaatc
tcttAAGAAGGATTTGATACCActaaatcctacctaagttgcGTGGCCTT
GAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaattaaaatttg
ccgcttgatttcaaaaaatatataactcgaaaacaaagaaaccactAAAT
TCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggcttcacttttt
cttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTNGATCTCTTTCTCA
TAATCACGTGATTCAGTTTTTGAACCACCAATCATACCAGCGTTTTGTCC
ACTCAACACTTTCTTGGTAACACTGATGATGTAGATGCTGGATAGGATGA
GGAAGAAGTCAGTAATGATCATTATGATGGAGATGATTTCCAATGCTCCA
GATCTGTTGATGAATATGGTTAACGTTGGCAATGCACTGATAACCCACAC
AAACACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGA
AGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGA
AGTAACGAAGCAATCAAACTGAATAAGATGATAAACGCCAGGACTAAGAT
CTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTA
TCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACTGATAATGATT
TGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCT
TCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGA
TGGTGAATCCTTCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCT
TCTCCATCTTTGAACGTCATGTTGACTGGAGTCTTTTAAGcgaatttata
aaatttgataattttcaactCTATAATATTTAAATAGAAATTTACACCAT
GTTATAATAAATTTATAAGTGATGAGACACAcaccaatgaagtaaaagcc
caaagggctagaagcgaatctcttAAGAAGGATTTGATACCActaaatcc
tacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCAC
cagattgaaattaaaatttgccgcttgatttcaaaaaatatataactcga
aaacaaagaaaccactAAATTCaatacgtcatcaaaaaaaaacgGCGTat
atcttaaggcttcactttttcttttctgaGAAAAGTTAAAGATTCGCTTC
TACCCTTCGGGCTTTCACTTCATTAATACATACCCGAGAAATCAAGACAC
AAGTGCCTCTTCGTCTCACTCGTAATGAACGAGAgatgtattttttaaaa
atgagaTTCAAATAAAGTTTCCAAAGCGACTCTCTTCCTCTTTGGTTTGT
TTACCTTTATAAAActtcatcaaaacaaacaacctGAACGTCATCAGTCA
AAACCACCAGAAAGATTCTTTCAACTTATCACTACCTCATATCGACTTTA
TATGGCGATAAAAGTCAACATTGCTCTTTTCCCTCCTCTTCTCTCGAGTT
ACGTGATAAAAAGATCTGTGATTTTTGTCGGTTGAGAAGTTTTCACCTTT
CTGTTCGCTGAATGCCCTTTTCATTATCACATACCCACGAGTCTTTAATT
CCGATTTGTAATATTCAACCACTTGCAATTTTATGAATGTCTCTTGTGAA
TTTATTCAGATTTCTAAatggaatgttttttttcgattttttattcagtt
tatCCAATATAACTTGTTATTCGCTGAAAAATTATACTAAAAATATCCAA
TTTCCATCAAATTAATTCGTTCATTCCTTTATCAAACCTGTAATTAAGAT
ATTACAACAAATTATCAAATTATTTATTGCTCCTCCTTCCTCCATTTAGC
AAGCTATGGTAGTACTTCAATCTTCAACTATTTTCGTAGTATTTTTCATC
GCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004243TCONS_00004243Clytia hemisphaericatranscript
TCONS_00004244TCONS_00004244Clytia hemisphaericatranscript
TCONS_00004245TCONS_00004245Clytia hemisphaericatranscript
TCONS_00004246TCONS_00004246Clytia hemisphaericatranscript
TCONS_00004247TCONS_00004247Clytia hemisphaericatranscript
TCONS_00004248TCONS_00004248Clytia hemisphaericatranscript
TCONS_00004249TCONS_00004249Clytia hemisphaericatranscript
TCONS_00004250TCONS_00004250Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:397527..405329 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.71	8.81	8.12	6.95	20.18	16.44	18.84	20.99	17.01	15.95	16.27	18.61	14.39	13.52	15.68	14.6	10.24	12.98	11.83	10.63	11.83	12.23	16.85	15.1	11.66	13.5	9.51	9.96	10.98	11.61