XLOC_002697 (gene) - C. hemisphaerica

Overview
NameXLOC_002697
Unique NameXLOC_002697
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000048:598919..606822+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002697 ID=XLOC_002697|Name=XLOC_002697|organism=Clytia hemisphaerica|type=gene|length=7904bp|location=Sequence derived from alignment at sc0000048:598919..606822+ (Clytia hemisphaerica)
GATCGAGCTCCCGAACCCAAACAACTGAAACAACTAGAACGACGTAagta
aatacacttttttttctataagaaacaattttataagaacaatgaggctc
gaaatcgttaaaaaataaaaacaatttaagaacaatgctgagcctggaat
gactcattttcaagcaattcagtggtcaaagtagtaaaaaatgggtataa
cgcctaaaatacctcaattacactCTATAATAAGGGAGCGtctccaaata
ttgtttcaatttcttcgtttcaaattgtttcatgaaACGAATTAAAACGA
AGCTCAAACGAAGTTCAAACGAAGCTCAAACGAAATGCATAATTAGCTCT
AATTTAGAGATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TAaacatcgaaaaaaatattacgcATTTTGAGGAAGTAAGAACTATCTAT
TGTTGCAGTAACAAAATCAGACTATTGCTAAAAGTTCTAAAAAGCTTTGG
ATGACGTGGAAATTATATGAAATTCAGagaataaaattatttcgtttcac
cattcgtttcaaaattattctctttttttcagttcaattatCTTGTTTTT
TTAAGTAATTAAAGTTAATCAGACATCATTATCTGAAACGAAGTCGAAAC
GAAGTCGAAACGAAGTCGAAACGAAGTCGAAACGAAGTCGAAACGAAGTC
GAAACGAAGTCGAAACGAAGTCGAAACGAAAGCTAAACGAAACATAAACG
AAGCAttcgtttcattttcgtttaaaaatgaaacaatatttggagacgct
ccctaagaacaggataagaacaatttgaggttcaaagtgccaaaaaataa
gaacagccgagcctcagaaaGATttcactggttcttataaaaaaaaagac
acAGACACGTGCATGCTTTTTAAGCCTGTCTCGGACTTCGattactacct
tatcggccctttttacaccggcccgcaccggccctaatttaacaccgacc
ccttttacgccggcctttATTACGCCAGAgtctaattttgggcttacgcc
aatcagggccgttaataacgccaaaatttgtaaaaatggcaaCTTATGCT
TTAAATTAGcaaataatgtttaaaatttacattaaaatgtcatgtttcaa
taataaattgttgaaatttccattcaaaatcactgattttcggGAGGTCT
tagatatggagtaaaacaatcgATAATTTTTGTAatcgaatcatacctaa
aatcctttaaattgagaaataatgatcgAAAACTAACGCcacttttaggt
aaaaattgtaaaatttcggccctttttacgccagccCTTTTAACGCTacc
ccttattacgccacgtgcccaaaaataacgccaataagggccggcgtaaa
aagggccgataaggtattaatAATCAtcgttacacgttttttttaaagaa
catccgaaatctttgaagcctacggatgttcttaactttttgaatttcaa
gcctAAATATGtccttagcatgttcttattttccccactttttatgcatt
tttgtcCATTGTCCTAAGAAATTAGCTGTTttcgagtccgcgaagcctta
aaatgttcttaacttgttcttaacattttggccatcgaagctttcgaatt
cttattaaaaaaaacgtgtatcttgtttataatatttttattgaaaggga
ATGCAAATAAACTCAAAATCCGAATTTCCCTCTCTACTTACCAATAACAA
TCCAAGAGTTCTCTCGACAATCTACCGCTTTTTCTGAGCACTCTTTGGTT
CAATTGCACgcttttttctaagaatacattttataagaatgtccatgatg
aaaatggccaaaaaatcaagaatatgcTTAGAATATCACAATCATGGAAA
TTTGCTACTCAAgttaagaatgccatttttatagcattttcaattataaa
ttgccaatcaTCCCCAATTAatgctcactcctttcacaaaaataccattt
tatgcttgagacgtatgtactaagtgttaaatctagtctgaattaggatc
ctaacctaagaatgctgtaagaatattttaggatgattttcccaaaaaag
ttaagaatatcaataatgaaatgaatttacaccattcttataaaaaaaag
cgtgtaggtcAATAACTTCATGATTTTGAGTTTTCCGACCAATCAGATTG
ATTTGACTGTTaagggaacttttggattgttatgggTCAGTACGGTATTA
AATAAGAATGTAATTATATACCATATTGCTTCGAAAAAAACCCTTTGGTG
TTTATAATGTTTTGGTTTTTGAGGGGCGTTTCCtcaagggggcgtttaaa
aaaaggGGCTGTCAACTAATTAATCTATAATCAAGGTCAGTTTGATAAAG
TGAATGGGAAATGAGACTCTTACTTTgtcttttcattattttttgagtCC
ATTTATGGATTGTTGCAGAAAAGGGTCAAAATCAGTTCGAATAATAAAAG
AATACAATTACAGcgaagtctctttaactcgaacaagtttgaagacccct
tcagttaacaatgccttacaaACCATACTCTATAACTGGaggtttcctta
actcgaacatcCTTGTGTTTTCCGtgcatgttcgagttatggagactcta
ctctATATTTATGTATCGTCAATCTAAGTTTTCCTTCATATAATACTTCC
TTACTACagctacttgtttcaaataaatgggagaatttttcttcaaagaa
ggggcgtttattcgaggggccACCTAAAAAAGGGTTTGTTTAATCGAACT
AATACGGtacacgcttttctttttataaataagaatcttaagctaaggct
acactgatagtttcttcaggcggctgcaatgcaattgTTGCGTTGCAGTC
GCCTGAAAATTGTTGCTGTCTAGCCATCTAAAAAAAGTAACcaggaaaaa
cgtcaaaaaaacattcgaattacaaaacattcgaattacaaaatattcga
attacaaaacattcgaattataaaacattctattttatcaaaaacattcg
attttcgaaGGTCCAACGTTCGAATGACGTAATAAGATTGGAATGTCAGA
TACATCGTCAAAGAAATTGCAGATTCttctgcaacaaaatcagttcaaac
tgattttgttgcagacactaatatttttattgcGTTGCAGAGCAATTGCA
GAAAAAATTGATGTGCTACATTTTGCAATCTCTCGCGCGCTTGCAACGCA
ACGTtaattgcattgcagccgcctaaaaaaactatcagtgtagccttagc
tttactatactaaatgagtttatgaaaaatgtctgtaacgctagcccagt
aacatatgttaaagtttctaaaatttgaacgccgcggctggaaaacctat
ctaccttcgatacaaaaagtctcgcgctaagtttgacaagcgtagaaaac
tcggattagagaagactctacactgctatttgtaaacgaaaaaagttctg
acgtcaatttcatgaaaaagtactgcgacgtcacaaagtttcaaataaaa
aggtgtggctTTTTTGTTGtacgatttcgaattattttatatcaacactc
gcaacaaaatccaacattgttgtttgatgattaaacttcgtctaacatta
tttaaaaaggtttcaatgttggNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaagcgcgagcctctcct
tcacaactaaggatttttctttttctagaagcaaccctctcaccacctca
gacacctttgggcgtctgcaacgacgggtaccctcgataattttaacagg
gtcactatggcatttcattgaacacaaacttccgttatcttaaaaagaca
tatcatcgaggcttacagacacaaaattttgactattgtagaaagtttag
aagtataatttttattattgtattcggcattttaagccaaaacgatgtca
ggcattaacccacattatagcattttaaaggcttttgatgtgcaagcaaa
accgttaaccggcgtttgcgacgacgggaaccgtctagtatcttctataa
aaatatcagggtgaaaattggccaaatcgtaagaataccctaagaatacc
ctctagggagaatttcacagaatttaataagaatacagtcattttgtatt
tggtcaacagaaaaaactgcttcctttgttagagattaattgaagctttg
aggaagaaatgtaattttaacccaaatgttcactcaaattgatcatttct
catgtttgtaaaaaagtcaagtctaaaaaagtaagaatatcttaagaata
tttaccctcaattttggcacataaaaaaattcaagggaAAAATTGAACTC
CATAACCATACTTGATTTTTTGACCtgagaacaatataatttctattccc
attgggattttgatagaatttttcatccccactgtggaAGTTCCACCGTG
GCTGTGAGCTAGGGGTGTCCAATATCCGACTCTAACCGGAAACACAATAA
AACCCCGTGTTTTTCTGGGCTGATAAAATAtttgcctgtttttttttttt
cagcctgAGGCTTAGAATCCCCGTTGAGAATGATGAAATTGAAGAGTTTG
ATGCAGAGGAACTTGAACGAACATATTTAACCAATGTGTACCGTTATTCA
AGACCTTTGAAGAACTTGAAGAAATTACAACTCCAAGGCTCTGTTTTCAT
GCACTGGGGAGTTGTAATCCACTATTTGGAAAAAGATGAAGAAGAGGGTT
TACCAGCTAGATTCATTTACGAAGCCAATGAAGATGATGGTCTATTATGG
GCTAGATGTCGACGTTTCAAGGAAGAGGacgaaaaaattgcaaattctAG
TTTGCAACTCGTTGAAGAACACGTCCAAATTTCTAAAAAGGAAGCAGAgg
atttttgtcatattttcaaTCAAAGAGCATTAAAGTATGACCTGTCTCAT
CAAAATTGTCAGGAATTTGTGAACGAAATGCTCACAAATCTTTCTCTGGC
ACCAAAGTATACTTTTAGAAGAGTATACGATGCTGCAACTAACTCATCCA
GATCTCTCTATATCTCTTCTGGTAAAGTGACTGCTAACATTGTGAAAGCA
TTTCTACGATGTCCCAAAAAAGAATGGTGTATTAACATATTCACCAAGTT
GGGTTTTGGTCAAGAGGTAGTGGAAAAAATGGCCAACGAACTTATGCAAA
ATACCTTATATAAGACCTTGGAGGGTGCTTTCAACTGGTATCAACTTTTC
CAGGTATACCCCTTATTTTTTAGTTTTGCTCCTGCCATTgcttcaagcta
aaattttgatctAATTCTGATGGTTaataataatctttttgaaaatggaa
tatcttttttggCGCTTCCCTTTTTAAGAAATTTCTCAAACTGCACAAAG
GTTTTTgttgtagaaagaatcaaatcTTAAACGCGCTcgattttttttac
ttcaaatttctcttttctctttcttttttgtAGTATTTTGCTGAATTCTT
GGTGAGAGAACTTGGCTTCTATTTCTTACAAGAATATAAATTTGATCCTG
AAACATGCCATGCATCAGCTTTCGTATCAGGCAAAATCGCCAGTTTGGCA
ACAGCTACAGCTGTTGGTAGTTTGACAATGGGATTTGCTCCAGCGCTTCT
TTTTTGGTTTTGTGCTGAGATCATCACTCAAATTATAAGTGAGGTAGGCT
TGTGGTATTAATTTCTTTTactatacacttttttataggaacaactttat
aagaataatggcTTGGCATTAATTTCTTTTACTATACAATTTTTTATata
ggaacaattttataaaaataatgagGCTAAAACTCGCCAAAAATAATACC
AATTTGAGAACAAtactgagcctgaaattactcaatttcaagcaattcag
cggtcaaagtagtaaaaattgggtatattGCCTAAACTACCTCAATTACA
ACCTAAAAACCTTTTGCCccaaaaaatatcgaaatttggtcaaattagtc
ccaaaaagggtcgtaaaattcacaaaagttttcccttttttcttcctttt
tagtcccgctaagggttcgagggtcgaaagtcgaaCGGTGCACCCCCGTC
AGCTCACTACCCTAGTACCCTCCGAGGTCTTATTAAAGAAAGATCTAGGC
AAAAAAATGACTCGTACAATATACGTTTAAatctttattttatattttta
atccTTAGGCTGCACGATACTATCTTGGTGACAGTTACCCAACATTGTTT
GGTGGTGATTCTGATTACATACGTTTCTTTAATGTATGTCACCAGGTTTA
TATCCCCTGGTTTGAAAAGAAATGCCAAGATCTTTGGGAACAATTCAGGC
ATGTCTAGTTTTGTAAAAAGCGCAAAGACACACTATAAGAACAACGatat
ttattcttttattttttggtaTGTAGTTTAAAAACTGTCCAACTAACGTT
TCAAGACCATctaaaaaaaacgacaaataactatcaAAGACCGACATAAT
TATCgacaaatgataaaaagaacgacaaatgaCGACATAGTTAACCATCG
CAACCGCGACTTTATAAGTGGTATCCCACCTACGTATTTATTACTCTTTG
TACTTTACACTGTTTAACGACTAGCGGTTtaaacaaagatttattataca
ctggataaaagACTCATAAAACGGTAGAGAGGGATCATTGTATTTcgatt
gtttcagaaaacaattgatgttctagctttgtccgcaaatgACTGTCACA
GCGGCTCGAAGAtatctgatttttttaaatgtttatcagtcttatttaaa
aaaagttctttagatctttctttttgtacatttgcaggaATAAAATTAGG
TTAGCAtaccatggaattattatagacactggaaaaacaacgagctgatt
tttgccaatttctcatgtacaagccttgtccgcagtaatgacattattgt
tcac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004765TCONS_00004765Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004765-proteinTCONS_00004765-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:598919..606822 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0.28	0.23	0.11	6.68	4.59	9.67	11.04	17.57	41.66	7.43	11.02	9.02	7.74	4.42	3.67	9.53	13.15	23.88	34.31	4.79	4.69	14.04	14.45	28.68	27.39	49.46	65.62	10.56	7.69