XLOC_029927 (gene) - C. hemisphaerica

Overview
NameXLOC_029927
Unique NameXLOC_029927
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_118:339462..343361+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029927 ID=XLOC_029927|Name=XLOC_029927|organism=Clytia hemisphaerica|type=gene|length=3900bp|location=Sequence derived from alignment at scaffold_118:339462..343361+ (Clytia hemisphaerica)
TTCTTGTTCAGTTTATTTAGGCCTTTTGAATTGtcctgaatttttttatg
attttgggTTTCGAAAtcggcaaaatttttaaattacaggcctctaataa
aagaaaaagcgtgaaTTGCAGGCCACACCCATCAATGGCGTACACTTGCC
TGGATACCTTATTGGCCatgattttattttctgattGGATGAGATTAGGT
AAGCAAataagaaaactaaaaatttttctcaagacTTTTCTAAGTTTTAC
ATTCAAGATTTACTCTGAAACCCAATGATAGCTATTACTGGTAGTCCCAT
TTAAGATTGTTAAAAAAGTACTACAGACTCGTAGATAACTGCCTGAACTC
ACTGATAAATTAAACAATTTGACTTTAAAGGCCGTGATACACTTGTCAAT
ATtaaatcaatattcaaaaactGTTACAATATATGGATCATAAATGTTAT
TGAGCTAATATTGCTGAATGTaaggtaaaaagttgaatttgaaattaTGT
TCAAATTCATGAAAGTGCAGGAAAGTGCTCTATTGTTCGATTATTGAGCG
AGAGTtgatttaaattgaaatttttcaatttttcaaatcaacaatagaaa
gaaaggaaaaacaaTTGATTTCGATTATGTAAACAAACACtttccattca
atttttctccaaaagagagagaaaatatttctcTTCTTGAACAAAGGGCA
AGTGTTCCTATTGTTTGCAAAATTACCTATAATTTTGAGCAAGTGTAAGG
GCCcaaattataatagatcaatatTCTATGATTGAATATAATTTAGACTA
TTGATAGGTGTAAGGAAGCGatcaattttagatttatatccAAATATAGT
AAcagtttttgaatatttaatATTGACAATCGATCACGGCcttaagtctg
tctcaatattaTAATTTGTAGCGGAGATAAAAAGACTGTaagttttgata
gaattcgaagtagatagcgattttgtgctcgttaaaaatataatccagaa
aggaatattattaaaaaagaaaaatctttaaaaaatgggaaaatgaagaa
aatcaacttatttagaataatgctatgatcttcatttttatatcagAGAC
TGTTGAATCTTAAAACGTCATAAATGcgtatcaaaaaatatttattcagt
caaaaaatacagctttGTTGTTAGTTTATTTAATGGTTTTTTTTAAGTCA
ATCAGTGATAAACTTTGGATTATATCTTTCGACGGaataaattttttgga
aaaactttttcacatcAAGGATGCTATAAGAtcaaggaattattatagac
actggaaaaacaactcgctgatttttgccaatttctcatgtacaagcctt
gtccgcagtaatgacattattgttcaccctccttccaccattaaCATGAT
TCTtcatagcattttaattgcatttcacatcaaaatacacttatccaatt
cccaaatgagcttttaagttctcctccgagagtcaaactcatctagttaa
ttactaactatgacgttttaaaatgcgatgaccgtgccaccacgtgccac
caaaagattttcatatcacagtgaagctatgagactcacgtctaataCAT
Gtaaatctcagctcttctcggagaaatattggaaagatattcccaattca
aaatttcgtgtcattataagcattttgtttgaatttactcgtctaatgat
gtttttctcacaccagatttcataaatgtattcgcttgatattctagcat
ttattttcaaacctttggccagcaaaagtacgcATAGAAAAAGTTAGACA
GCTctttagaaataagagtattaatcatttttcaaaatcagagtccttcg
agccgcaATGACAGTTGTCCTTCGCGGATAAAgcctgtacatcgattgtt
ttctgaaacaaaagaaagacaatacttcgctctccaccgtttcattcgat
gtttatccagagtctctataataaatccatgataAGATCAAAGAACCACT
CGTGTGTAAATTTTAGCACAATTATCGAAGAAGTcgattttccgatcttt
tttcgaattttttctttGGATCAGGTCCGGTTAGAGTGGTCACCGGCTAC
GAACTGAACAGCTATTGGGCGTGGTCTGGGCCACGAGCTAAACAGCGAGT
TGGCGAGTCTTTGGCTACGAGCTGATCAGTGAAACATGGTGGTCTGCATT
TTCTTCAATTAAATGTCCGGCCACCAACTGAACAGTGAAGAATACTGTTC
AGTTTGTAGCCAGCGACCACTCTAACCAGACCTGATCCTCTTTTTTCGTT
TCAACAAGCgctaaacaagcacaaaaccgctatctaattcgaatacTCTC
TCAGTAATATCATCCTTTCCACAGGTGATTGTTTATCATGTTACGATTGT
GGTATGTCCTCTTCAAGCAAGGCGTGCAACAACACGCAACTTCTAAAAAG
TTGTTCAAATACCAACCAAATTTGCATCACTGCACGATATTATGAACAAC
TGGGCAACACTTTTAAATACGTATTTTTCAAAGGTAACACAACTATGAAA
TCTATGCTATAATGAAAGACGTCATTAAAAGCACTATCAACTCAAGTAGC
TAATAAATTCTTATCAAGTTTACCAAAGTTTGATTCTAGACATGTCTATA
AGCGTCATGCTACGTCATTAATTacacaaaaaatgtaaaataccactgtc
attatttttctaggCTGTATGAAGAAATCATTTTGTGAAAACTATTGCAA
TAAATTGCCATTTGATGCTACACAATGTATGGTAAGTGCTTAAATGGCAC
ATAACGTCATAACGACGTCAATTGAACGTCCATAGCACCCATGTTTTGTT
ACTTAAAAATAGTTTTATTAATGCCAGTATGAGTTTTTTTGTAAGGCTCT
AGGAGGAAGAAAGGGATCTATTTCTGGGACTTGGGAacctaaaagaaaac
ttttgaattgtAATGAAATCTATAATACACTGCATTGCCTGAATATTGCG
CCAGCATGAGACACCTAGTAGCAATTGCAACTTAGTTCTTTATCTCTAAA
TATTTCGctcgaatttttttgaattttcttgaattttcttGAGCACTTAT
ATATAATTATTTCACTGTTTATCGGtgatcaaaaaaatatcagcaatctg
attggttaaaaagagtacaatatatcttgtattttacatgtaagaatata
aattgacgaaaagatgttgttgcattgtagcggtagcagcaatataacgt
cactttgctacaaaagtgccctgcgcttttttccaacacaaaaagtgcat
tttttgagtcaacgataaaccagttatcagacatttgctcgtacaatatg
gaaatatttcacttgtTCCGGATTTTTTCcgtatataaaatattgtacgg
aaaaatctcggaactcgtaaaatatttctcatattgtactcgcaactctc
cgataactattacatattgtaatatATTTCAGAGCAAATGCTGTCAAAAA
GACAAATGCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCAATATTT
TCAATCTGATGCGACGAGAACAGAATGCCAAAGAAACATCAAAGTAATGC
TCGTGTTTCTGTATTTACTAACTTTATTTGATTGGCTCATAACTTGAATT
ATAACACTGCTTAAACTataaatgttggaaaaaaagttaaaatgtaTACT
CACGTCTATGAAGTGTTTACATGGAACTGTGTCTTTTCATGGCTTTGGTT
TCATTCAGTGGGGACAAACTTGACGTTACTCGGAGCATATACCAGTTCCA
CCTATCTTAGTTTTTTTATCTAACAATTATTTATTGTAATAGTttctgta
aaataaaaataaaagagttCACGATAAAAACATCCCTTCACACATTGGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00046901TCONS_00046901Clytia hemisphaericatranscript
TCONS_00046902TCONS_00046902Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00046901-proteinTCONS_00046901-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:339462..343361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15	0	0.12	0.01	0.08	0	0.1	0	0	0.17	0.22	0	0.47	0.43	0.36	0.1	1.1	1.86	0.18	0.31	2.9	1.98	2.49	2.68	1.64	1.67	6.07	7.2	2.08	1.01