XLOC_030214 (gene) - C. hemisphaerica

Overview
NameXLOC_030214
Unique NameXLOC_030214
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_128:44158..50323-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030214 ID=XLOC_030214|Name=XLOC_030214|organism=Clytia hemisphaerica|type=gene|length=6166bp|location=Sequence derived from alignment at scaffold_128:44158..50323- (Clytia hemisphaerica)
CTTATTTTTCTCAAGAATATCAGTAAAATCAACAATTCATTTTTTTTCAT
ATCGAATTTCATTAGGAAAATGGTATTGTGTCAAATTTGAGGAAAAGTGG
GAGTAATAAAAGTAGATTACGAACCATTATAAGGAACATTGAAAGAACGA
TCACGTCTCGGTAAAAAGATAAGAAAGAAGAAATGCCTACAGCTAATTTT
GCAATTTTCATTTTAGCAAGTAAGTGTTCGTTGTTAAATCTTAAATTACT
GCACTGAATACACTCTTCTAGAGATGCATAAATTTATTGANGTATTTTAT
CAGTTTTCTTAACTGCATATCAAATCACTCTACAGCAATCTTATCACACA
AGCACAACGGATGCAACGCTCAAACTTGCGGTCATGTGACTATTAGCCAA
TCACGTGTCATCAATGGTGTGACGTCACAAGAAGGACAATGGCCTTGGCA
AGCACAAATCAAACGGACAGTTTTTGGTGAGCAACACCATTGCGGGGGTA
CGTTGATTCATCCGATGTATGTTTTGACTGCCGCTCATTGTTTGATGGAC
TATAGAGTACCGTTTCATTATCAAATCACACTTGGGAAACATGACCTACA
AACGTAAGTATACACCTTTTTTTTATTAAAACATCAACAATTTTTGAAGC
CTTTGGATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGC
TTAACATGTTTTTATTTTCGCCATTTTTATAGTATTTTTGTCCATTTTCT
TAAGAAATCGAGTGTTTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAA
CACTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AAACGTGTACTGTATTGTATAATTTATACGACAAGCGTGCACAACTTATT
TTCATCCCATTACTCCAAATTTCGTAATATATTCAAGAGAAATTGTATTT
AGACTGATAAGTTATGGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGT
GTGTCTCGTAATCTGATCTAGACTACTGCTATCTCCTAACGGGTTCGTGT
TTTTTAAAATACCTGCACGAAGAGCGAGGTCAGCAATTTACAACTTAAGT
ATTAACCTTAACCCCTCAAAAACAACAGTACAATCATGGTCAAAATATAT
TGACATTTTAGTGTATTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAAT
AAAAAGTTCGGGCGAGAATTGCTATTTTAGCACTTCCATTTTCTTCCATT
GAATATTTCGATTTAAGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAG
AAGTCTTATTCGAGCAAATTTGAGCTTTTAAATCCTGAGATCCTAAGATC
CTAAGTTTTAAGTCTCATGTTAAAACTCAGAGTTAAAACTCTACTTTCCA
GATGTAGTTTAACGCGCTTAAAATCATTTGTGGTGTTATTTAAAATTTCG
CCGGGAAATCCCTTTTGTCTCAAATATTTTGTCCATGATTGTAGTATATA
GTAACAGTTTGAAAAGAGTACGAATCCGCGTTTGAGAATACCNAAACAAC
ACAATTATCATTGTGAATATGTAATTTTATAGCAATGAAATCTGTTTGAA
AACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTGTATTCTCATT
TAAAAAAGTGCATTACAGCACCCGTTCCCTTCGTGTTACCGGCTTTTTGT
TGCTTATTGAGCGCCAGGGATGATTCTCTGACGTCCATCAGTTACGAAAA
TAATGCCTAAGATATACAGGGCAGGACGAGGTTCGGAGAAAGAAATGATT
AGGTCGGGGTTTGAGTCATTCTCTGGTGTTTAGAAAGCGATTGAAAATTA
GATCTTTAAGAGATTATAAAGAATGAAAGAACTAATTTCACTTAATCGAA
TCAAGTAGAGGAGTAGTCAAAAAATGCTCGCCTGAAAATTAATAGGTCGC
GGTAGGTTTAACATTAAAATTAAATTGTATTTTATCAGTTTTCTTAACTG
CATATCAAATCACTCTACAGCAATCTTATCACACAAGCACAACGGATGCA
ACGCTCAAACTTGCGGTCATGTGACTATTAGCCAATCACGTGTCATCAAT
GGTGTGACGTCACAAGAAGGACAATGGCCTTGGCAAGCACAAATCAAACG
GACAGTTTTTGGTGAGCAACACCATTGCGGGGGTACGTTGATTCATCCGA
TGTATGTTTTGACTGCCGCTCATTGTTTGATGGACTATAGAGTACCGTTT
CATTATCAAATCACACTTGGGAAACATGACCTACAAACGTAAGTATACAC
CTTTTTTTTATTAAAACATCAACAATTTTTGAAGCCTTTGGATGTTCTTA
ACTTTTTGAGTTTTAAGCCTAAAATGTTCTTAAGCTTAACATGTTTTTAT
TTTCGCCATTTTTATAGTATTTTTGTCCATTTTCTTAAGAAATCGAGTGT
TTTAGAGTCTTAAAATGTTCTAAACATGCTTTTAACACTTTGGCCATCGA
AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAACGTGTACTGTAT
TGTATAATTTATACGACAAGCGTGCACAACTTATTTTCATCCCATTACTC
CAAATTTCGTAATATATTCAAGAGAAATTGTATTTAGACTGATAAGTTAT
GGCGAGCGGAATTAGTTTTCTAAGAAGGCTTGTGTGTGTCTCGTAATCTG
ATCTAGACTACTGCTATCTCCTAACGGGTTCGTGTTTTTTAAAATACCTG
CACGAAGAGCGAGGTCAGCAATTTACAACTTAAGTATTAACCTTAACCCC
TCAAAAACAACAGTACAATCATGGTCAAAATATATTGACATTTTAGTGTA
TTTTAACGTTTTTCTGAATAAAAAGTAAAAAGAATAAAAAGTTCGGGCGA
GAATTGCTATTTTAGCACTTCCATTTTCTTCCATTGAATATTTCGATTTA
AGAGGGGTTCGGTGGCTTCTACGCTATATTCCAAGAAGTCTTATTCGAGC
AAATTTGAGCTTTTAAATCCTGAGATCCTAAGATCCTAAGTTTTAAGTCT
CATGTTAAAACTCAGAGTTAAAACTCTACTTTCCAGATGTAGTTTAACGC
GCTTAAAATCATTTGTGGTGTTATTTAAAATTTCGCCGGGAAATCCCTTT
TGTCTCAAATATTTTGTCCATGATTGTAGTATATAGTAACAGTTTGAAAA
GAGTACGAATCCGCGTTTGAGAATACCAGCAACAAGTCTCAATCACCTAG
ACCTATCGAACTGGAGTGTACACGTTGTTTGACTTTCGACCTTTGAATGA
TCCCCTGCTAAGGGGACTAAAAGAATGGAAAATGAGAAAATATTGTGAAA
TTTAAGACCCTTGATAGGACTAATTTTGACTAGTAATTTGATCAAATTCC
AATCAGTTGAAATTTCCCTGTTTTTTCGACTTTTTGGAACTGAGATTTAA
TTTCAGACTTTTCAAACCCTTTTCAATTAGGGACCAGGTTATAAAAAGGT
ACCCAAGGGTCAGCACATACCCGTGGCTTTCACTTGCCAGGCAAACATAA
CCTCTACTATTGTATTTTTAGGAAGGGACCAAACGAACAAATTTTGATGG
GAAGTGAATTGAAGATCCATCCAATGTTCAATAGACGTACATATGATAAC
GATATCGCACTCATCAAATTGAATAAACCAGCTGTTTTAACTGATAAAGT
AAATATTGCGTGTATTCCACCGAACGCTGTTTCTCCGAAACCAGTTCTCG
CAGGTATACATTGTGCTCTCGTTTATTCGAACGTTTCAACATCTATTAAC
CGAACTTTCTATAATTCAAAGTAACTGTCGGACTCCGTCAATAGTAGACT
AGTGAAACCACGTCGTTGTATTTCGCCGCAGCTTACTTCCACGCAGTAAC
ACGCAATCCCGGTACAAGCGTTCTTCCCAAGCCTTAGAAAGCAAGAGATA
ATCCACATTTTCACAAGCATAAAATAGTATAACTAGATCAATTATTACAT
TACAATAGTAAAATTATTTGCTTTCTCTCACCGTAGGTCGAAACTGTTTT
GTATCAGGCTGGGGATTGAAGTCATCGACATTGGCAACAAGATATTTACT
TCATGGAGATGTTCCTATCATCACAAATGCTGAATGTGCAAAAAGTGAGA
TTTTCGTTTAGATTCTTTAAAACCAATCTTCCTCACCTACAAGGCGAATA
TTTAACGAAATCTTCTAGATATCTTTCAAGATTCGTCTACAAAAATAGTT
TTTGATAAAGATTGATTGAATGAAGCTTTGTTCACTTAGAACGGAGAGAC
TTTTCAACTACAGCATACCTATGAATAAATATACTGAGCCTGCCATCTTC
ATACAGACATCCCATCACAGATCAGGTGGAATTTTATCAGCCCACGTATC
ACCCACTGGGGATAAAAATAATGGACCAAAACACGATGGGGATTGATATT
CCCATGTTTTTTTATAGCTGGGGATTTGAACTCTATTTTGTTTTCTAGCC
AGAAAATTCAGTGAAGATGGAAAAAATAGCACAATATTTTGCAGTGGGTA
TTTGCTTATCTGGTTATTTTCAGTGGGAAAAAAAATTAGAGTATATTTTG
CACCGGGACGATATTTTGGCCAATTTTTCCAGTGGGAAGGGTTCCCAGAT
ACAGATAACACGTGCCCTAAAACATCAAATACGTTTTATCCCTAAAACAT
CAAATACGTTTTATCTATAGGAAATTATGTGACGTGTCTCACGGTTTTCT
TCATAAGTATCTATAAGCGACACTCACGCGAAGTCTTGTGTATAGCCCCA
TTCTTGCCTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGT
TTAAAATGTGTTTTCTGATTGATGTAACCAACAAAACTATGGCATGTTAT
ACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCGT
CTCGAAATCTTCAAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTTT
GCTTAAAAAAACAGTCATAACTTTTGACACATCATTTTAGAAAAATTTAA
AATAGTTCAATTCTTTGCGGACAGTGTAAAGAAATTTTAAAACAAAAAGG
TTAATTACCCATTAAAACTTAGCACTTTTTATAAAATAAGGTGATGCAAC
ATATTATTAACGTCTTTTTAAAGTTCATAACGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATTTATAAAGGCAATTCTTTGTTAAAAG
TGTTAAAGAACCTAAAACATAACTTTTATGTTCAAATACTAAAATCAATT
TTCCGACTATGGTCAGAGCCCTTAAACATCACAAATATATTCCTTTTTAG
AAATGAATCAAGTCAATTTAAATGGTGGAGTGACTGACAATATGTTATGT
GCAGGTGGAGATGGAAAAGCTAGTTGCCATGGCGACAGCGGCGGGCCGTT
GGTTTGCAGTGAAAGTGACGGTCGTTTTGTTGTACAAGGGGTGGTCAGCT
GGGGCCATCCACAATGTGCGGATGGTTACTATGGTGTTTTTGCACGTGTT
GACCAATATGGCGGATGGATAAGCTCAATTTTATATCCTGATAAATATTA
AGAGATCGGTAAATTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047446TCONS_00047446Clytia hemisphaericatranscript
TCONS_00047445TCONS_00047445Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047445-proteinTCONS_00047445-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_128supercontigscaffold_128:44158..50323 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.05	0.4	0.27	0.33	0.15	0.04	0.49	0.22	0.14	17.34	17.36	10.24	15.86	4.37	5.56	63.35	58.82	21.59	20.82	13.41	18	51.02	50.1	0.17	0.06	3.16	3.56