XLOC_030272 (gene) - C. hemisphaerica

Overview
NameXLOC_030272
Unique NameXLOC_030272
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_131:147291..153656+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030272 ID=XLOC_030272|Name=XLOC_030272|organism=Clytia hemisphaerica|type=gene|length=6366bp|location=Sequence derived from alignment at scaffold_131:147291..153656+ (Clytia hemisphaerica)
TCTTAGAAAAACTGAATATACATAACACAAAACGCAAAATCATATagaaa acatcaaaagaaaTGCTTCGACGAACTACTCAAAGattattggaacattt tgaaGTGGCCACAAAAGCTGGATGTATCAGAAATTTCCACATGTCACCCG GTAAGAACAACATTTAGACAActcaacgttgttttaacgtcctTCTAACG TTCCTAACATCCaattaacgttagatgaacgttgaaacaaccttTCGTGT TGGCTAGAAGGTTGTTTTGAAGTCACTTTTTACCAAGGTGATCCTTAAAA GCGTTGGAATGCCAACATTTCATCTCTAACCAACAAAAGATGCATACCCC GTTCCATTTTGCaacattttttagattttagaaaTTCGTTTTTGCAAAAT CCTTAAAATATCATATGAATATAGGAAAGATTGCATATTTCatgcatttt tattttattcatgtATTATGTTCTGGCTGTCTGACAAAGATTGTTGCATA ATTCATATTGCGAGGGTCcttcattttcataatttatgaTCTCCATTGAT GTacaaagtgcaaaaaaggaaGATTATCCGCCCGCACAATCCCAACTTAT CTCCCTAGATTTTTTACCTTATTGTATAACTTACCATAACTGCTATCACG TAAAgtcttgttatttttgttaaagTGATTACATAATATCTTAGCTGGTA TACACGTGCTCCCACTGCgctacaaaaaaaacaactagATTTTGCCATAT TCTTCCTTCGAcgttttaaaaaaacttcaccTAGTATTTTGAAGCTTGAG GTAGAAAATCAACGGGTCTTTTTTCAGATTAAGCCCGATCCATTCCACTT CCACTCTCTTCTGTTTTCTGTTGAGGAGATAGAGTTTCCATAGGGATTTA CCTCATCGGAAAAGTGAAAAGTTCTATAGTgtagctaaaaacaaaaaaca ggaATTCCAGGAGTCTCGAAAGAATTGACATCCTTTGGAAAAAACGACAT CCATCCGGAGGGTTGTTTACTCTTAgcttttgttcttattttgtagACGG TGAACCTGACCGTGGTCCTCTTGATGGAGTGAGAGTGCTTGATATGAGCA GGTAGGGTTTTCTAACAATCAGATGGATCTTTTTTATTGAAAGTCGACGC TTATTCACGCAAATCTCTTATTTTCGTTATCTTTAAAGAAAACAAAGTCG AATGCGATCGACTTTCAAGTTGTCGAAAGTCGATGATAGTTGAACGACCT CTTTAGATTTTTCAACTTTAGAAGAAATTATATTATACAAAACATTCAAC CAATACAATAGTAGAAAGGGTTGTCACGTGCTGTAGATACCTATTAAAGC GACCGAAAATAGTTTGGATGATATCTAAAGTAATAGCCGTAAATATTACT TCACCGCCAGCCAAATGGTTtataaagattttgtttatctATCTATTAGG GTATTGGCGGGTCCTTATTGCACACAACTATTGGGTGATATGGGAGCTGA AGTCATCAAAATTGAAAGACCAGGTACGCTCAAGTGTTTTtcctatattc aattttctcccCTTCCTATTTTCAGATCtctttgtttgtatttttgataa aaagcaTCGGTCCTCTCACCTCGGAAAAGTCTAAATAGATTCCGAAACTC GAATAATTATTGGATTGGAAGAAAATACTTGGTCCCTGAAGGAATAGTTT TGGAGCTTTATTATCCAAGAACATGTAACAACATACTTAGTCTTAAATTT ATGGAAAAATAAGTACagctgatttttataaaagcatGCTTTCCTCCGCA AGAGAACGCTTACTATCATTAAGTAATACGTTTTTCTAGGGTCTGGTGAC GACACAAGAGCCTGGGGACCACCTTTCGTTGGAGGAGAAAGTTGTTATTA CTTATCCATCAATAGAAACAAACGTGTAAGTAATATTAAGATAAAGAAAT ATATTCGATAAGTTGAACATATTACCTGAAACTGCAAATCAACGAATGTT TTATGAACCAATCAGGGAGCTTATGAAAACTCTTTCAACAACAGCCTCTC AAATTATGTTATCAATGTGGCTGTACTACAGCACTATctgaatttttaca attttggcgggaTTGGATTGTTAGCCTTAAGTACGGTACTTCTTTCACTA CTGGCGAGCTTACCAAAGTTCCATTCCTTTTTTTTCAGAGCATAGTTGTT GATGTGAAGACAGAGGACGGAAAACAAATCATATATGACGTAAATATTCT TTATGAAAAtatgtgaaaatgatttctaaaAAATCCTAATGGCAGCGACA GAACCCCAACAAGGCGTGGCAATAATAGCAATTTATACACCTGTTTTATT GCAATTTGCAACTAAGCCTTCAACCTAATTGAGATGGTATACAAATTTTT ACTGTACTTTTTAGCTAGCAAAACGTAGCGATGTGTTTGTTGAAAACTTC CAGCGCGGTAAGATCGAGAAAATGGGTTTTGGttacgaaaaattgaaaac attgaaCAAACGCCTGGTGTATGCATCTATTTCTGGTTTTGGAGCACATG GTCCTGATCATGAGAAACCTGGTTATGATATGGTGGCGAGTGCTGTGGGT GGTCTTATGAGCATCACTGGCCCTGCTGTGAGcacattttttattaaaag cttaaattttaagttaccttttccaaaaatatatttctttctTGTGTGTT TTACcataatacagttgacgctctatAATTCGACATCCTACTATTTGATA CACTCTATtgttcgataatattgaaagtcaccatcAACAAGAAACCCTTT taaacgacgttctactatGCGATACGCTTCCTTATCCGATagtccaattc cccttgaaaatcgaattagagagagccaCTGCGCTTGGTGCATGGTTTTA TTAGTATCACTGGTCCTGCTGTAAGCATATTATGTTTTAGTTAAAGAAAT GTATTTTTCGTTCTTTGGTGTTTTACCAACATATTacagataccttatcg gccctttttacactgGCCTttattggtcttattttttcgTCGGTGGCGTA ATAAGAGCTGGCGTGAAGGGGGGCCGTGCTAAATCAAGGACGGCGTAAAA GGGTATACCACGTATTTAATGCATGGTTTAACAGCGTTTCAGAATTAAGG CTACATCTTACATGACAAAGTCGACAAGCTTTATGTGTTTTACGTTTCTT TAAAAAGGAAGGGCGTCCAGCAGTGGCGGGGGCGTCGATTACAGATATCA TGTCTGGGATGTACGCGAATGGTGCAATTTGTGCCGCCCTTTACGAAAGG CGTTCAACGAACAGAGGAAAGCGAATACATTGCTCACTTCTACAAACTCA GGTGTGTTGCCTGTCTACAAcgttaatgtttttttttattttgtcgcTTG TTGTAATGTATAATATAGTATGTATAGTGTTAGAAATGGAACCCCCCTTG ATTTCTATCGTTCGCTCATGACATAAAAATATAGGAGCGGAGGATCAAGG ATTGGCACAACGTGAGAAAAAGTGATATTTTGAGCCACAGATATCCTTCA AAATGACCCCATTTAAAATTGACTATGCCCATAAATCAAGCATCAGAAAT ATTTTCCTTACCAAATGAACGAGTAACTGTATTGGTGTTAATttgacttt ttccatataatctATAGACGGATGTCATTGGCTTTATACAATATcataaa agaataaatttccgtATCGAATGCAAACGTACTGGATAGTTTGGCGAATT TATATTACCTTAATCTCAAAATATATTACGTTTTTAGGTGGCATATCTTT GTCACATAGCGGCAAACTACTTGAACACAGGAGTTGTTGGTAAAAGACAT GGAAGTGCTCATGGTTCGATTGTCCCATATCAagtaaaatttcatatttc aacaCGCTCTTATATCAATCCTTTTATTATTTCGCTTCGTTTAGTTTTCT TTGCTAGGTATCTACTTGACTGTATTTGAATCAGGGCAATGAAAGAAATG ATTAGAATCGTGTCACTGATTTCAATTCTGTACTTTTCGAGTCAACAATT TCattatacaaaaaaaatttattctattttcaaaatcttcacTTCATCTC ATTTCATTCAGGCGTTCGAGACTGGTGATGACCACGAGATTGTAGTTGCT GGTGCAAACGATAAATTCTTCAAAATCATGTGCGAGGTTTGTATAATAAC CATGTTGTGGTTTCCTAATTCTATAACCCTCTAAGacctagtctagcaag ctagacgactaattcagacatgaaagtgaaaagtaatggaggtaacaatt ttagtttatacaaactaaaccccgtaacaataatcgtattatcatataac gcctatactactgtattgcacgcattataaacgactccagtctatccaag accttcatttttaatttttaattttcatatcaaattcTCCATAGTATGTT CCATATAATAATCATACCACTCCTAGAAACCTTTTCAACAAGTACAAAAC CACTATCtaatttgaattttatcaaGAGTAAGTCTTCTTTGTTTCCGCTG GGGACTGTTTTGAAGGACTTTATATGTATGACTTGATGCTTTTTCAGGTG TTAGGTCTTTCGGAACTGGTCGAAGATTCTCGTTTCCATACCAACGCTAA ACGTGTTATCAACCGTGAAGAATTAATACCCCTTCTCCAAGCAAAGTAAA TTTTTGCCTTAATTACACCTATTCAAATCTCGAAAGTGCTAAAGGTCTCT CTCGGGTCTGACTTTTTGGTAAGAAACCCCTCCCCCAttacaaaaatgga aaatacCTGTCTACCATTCGCAACTAAAAAACGAGCAATGCAAAATGATA AATGGATAGTTACATCAAAAGGTTTCAGGCCCGGTgaaagcggggagact ggggagacttcagcctccccacttattagcaaaagagatatttttctcaa attccaagcgaatttcatcttattttgagccttccccacttttacggttg ctCCGCTGGCCTGCGTTTTCCTATTATTTTCGTTTTCACCAGATAAACTA ACCTACCCAACCGTTTAGATTTCAAAGCATTTTTCCAATTTCGAGCATCT AAAATGTCACTCTTTTGTTTAGCTTAGGGTAGAAACATGTAAACTCGTTT CGTTTCTTTTTCAGATTAAAAGAGCAACCAAGTCTATACTGGATTGAGCA TTTTCAACGCGCGGGCGTACCATGTGGTCGCGTGAATAATATGGATGATG TATTTGACATGCCCCAAGTCAAGGCTCTTGGTATTGTTCAAAGTATTCCA CATCCAACAGCCGGAAGGATCAAAGTACCCGGTAAGTGTTGTTGTCTGAT CATCATTCTGTCGGGTGATCATGATAAAGTACAGAAAATGGAAACTTAGA ATTTGTTTGAaaccttttataaaaattgaaggtTTGTAAAGTCTAAATTC AGAAAAGGGTTAATTAGACGCTGAAATTTCCAATGAAACAGCTTCTATCG ACATCTTCGGCTTAGATATTTCCTGGATTTCACTTCTCCAGTTAATGCGA GACCATTTTTTATCACCTCcctgattttcttattttcgaaGATGAAGTCT TCTGggttttcaaactttcaatcaGGTTCCACTTTAAAAAACATGCCTAG AGAAAAACGCTGGTTAAAAGAACGTAAattataatttcattttaattaca GGTCCAGCAGTTGAATATGACGGAATCTCACAATTAGCACTCGCCCGTCA CCCGCCTTTGATGGGTGAGCATACCATCGAAATTTTGAAAGACGTTTTAC ATTATGAAGAGACAAAAATTGAGGAACTGTTGACAAATAACGTTGTGATG GAGGGAGGTGCTCATAAACATATCAAAGCACACAAATATGTTTACTAAAA TCTGATTGGTTCTCAAGTTGAATAATGGGATTTCATTGGTTGTAAATTAG AAGCGTGGTATTTGATTGGTCCTTTAAAGATTATAATTCTTGACTTTCGT ACAGTGTTCTCCGCTCTTAATTGACACTCCGGAACTAGCAAACGCCtcgt tttgaaaatttaaactgTCGTTTGGCTTGGGTATAACATAGAATCAAAGC TTACANTAAatgcctcgttttgaaaatttaaactgTCGTTTGGCTTGGGT ATAACTTAGAATCAAAGCTTGCAATCAAAACGAATTCGACGAATTGTAGT TCAGTAATTTATATTAATCTTGGAAGTAGAATTTATCAATCCATACATTT TCACGTCATACATTACGCATATAGATGCATTAATAGTTgctacaataaat attttttaaataggaAAATTAAATAACTATACATTACTGGAAATATTGTT TCATATAAAAACAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047526TCONS_00047526Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047526-proteinTCONS_00047526-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_131supercontigscaffold_131:147291..153656 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SUGCTPREDICTED: succinate--hydroxymethylglutarate CoA-transferase isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.69 54.42 78.55 81.38 1.95 1.34 4.3 3.98 3.02 3.83 4.02 3.59 5.64 4.36 7.53 8.1 5.2 13.35 3.42 6.04 3.05 3.86 26.31 23.01 3.11 2.8 4.27 4.24 16.53 16.84