XLOC_030470 (gene) - C. hemisphaerica

Overview
NameXLOC_030470
Unique NameXLOC_030470
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_139:416565..427071+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030470 ID=XLOC_030470|Name=XLOC_030470|organism=Clytia hemisphaerica|type=gene|length=10507bp|location=Sequence derived from alignment at scaffold_139:416565..427071+ (Clytia hemisphaerica)
tgactttattttaatgtcgaaatttcaaaaaatcatcaaaaacagcgagc
aaacttttctcttggcacctaccttctttacacataaaaataccaaaaaa
tgcaactgtgttcatcaaaactcgttacggaatataagaatatggtaaaa
caagctattcccatgtggaaaaatatttttggtaaagctgaaaaaaaaat
ctttgaaaaaataaatcgcTATTCCTCAACTAGTTGTTCAAAGAACTTAG
GTCTGCATTAAGTTTGCTGTTGTTGGAAAAATTCATGACGTGTAAATAAG
ATGGACAAaccgttggcaaaatataagataggagaaaaaagaatcaaaaa
gacaatgaaattatgtttttgtcattttgtcttatttatagcgtaattgc
tgtttttaatgattttttgaaatttcgacatggaaaaaaagtcagttttt
tggaaataactttcgaactactttttcaaatttaatgtataatagctcaa
aattcaagttagagcatcctctatacaataaaaaaataatgaacgaaaaa
tataaatcctggagctcacaatatctcgacaaacctgtatactttttttt
ggtgcacccggtatatcaATCAAAACTCTTTTAAATGATTATTTTAAGCT
GCTGCTGCCAAAGGGACTTGCATGGGAGTCAGTACTACATGTACTACAAC
TTatgagaaattaaaaatttctgTTCCTGACTGCACTTACTTGATGCAAC
TAtacatttacaaaaatatacaattcTCTGAAGCACTTATTAAGAGAGCC
GAAAATCTTGGCTTCAAAGCTATATTATTGACAGTGGATGCACCTACCAT
TGGAAATCGGATTGCTGacgtgaaaaataaatttggtaTTGCGAGCAgta
tgaaatttgaaaatttcaagggGCTGCTATCACACACAAATGAAAGtctc
aaaagttatgttcaaagtAATTTTAAAAGTAGCCTGAGTTGGGATGATTT
GAAATGGCTACGTTCAGTTACTACCCTGCCAATTTATTTAAAAGGTAAGA
GattgatttttatttaaagaaaattaaaagacaAATTGGTTTTTATTCTT
ATATATAGTaacagttttcatttttctatctGTTTTCAGCCGCATTTAAT
TCTTATGGTCATGGCCTTTTATGCTTCGTCTCTTTATCACTGCAATGTAC
TGCAATGtaacattttatatttttcataaatttattGTCAGATCCAACTT
TAAAACCAATCGCCAAATCTTAAATCATCATATCTCAAATATTCTTTCCG
AAACTCTCTGATTTTAGGTATAATGACAAGAGAAGATGCAGGGAAATGTT
TAGACCATGATGTCCAAGGTATCATTGTTTCTAATCATGGTGGAAGGCAA
CTCGATGGTGTACCAGCTACTGTAAGAGATTTTCTCATTCCAGGTCATTC
CACGGTttttcccccggggggggggggacttaggNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCATTGCGCCCT
CTTAAAGGGATCGAGGCTAATTTCAAAGATACCTCTATTGAACTATTTAG
AATAAATGTTCAGCTGAATAGTGGTACTAACAACACTGTTTCCAGATTtt
gattcagattttttatttcaactgttatgttttgtttcttcccATATCGT
TGAGACATTCGGTTGTAGGCTTAGAACAGCTGTAGAACAGAACAATACTC
TCGACTCTTCTGTATTAGTCTCATTGACATCCTCTCGTCCTCTCTGTAAA
AGCgtcgttttaaagcttatacttgcaaaatagtcctttcaaacctagac
ttcatcagttctgattttgaaccttaccgtaggatcacataagattccga
ttccTGCTATAACACTCCACTTGCCACTTGAAAACAGATGATAGTTAGCT
CCGActagttgaaaaatcaaaatcaaaaaacgcaaaaaagaagttatgtt
ttgattatttttataatcggccaacttgtttcattgaaaaaataaatcaa
aacattacttcttttttgcgttttatgatttgccagcttggattaattca
cttttttctgccGGTATGCCCGGGAAAACTAGCGGAATGGTCCCGGAAAA
GCGCCAGTAATGCTAGAGCGggaatcggaatcttatgtgatcctaCGGTA
ATCCTTGAAACGGATATCTGAAATTTATCTACGTTCATTATTACgtattt
tgaaactttagcgttctatttgttcttgtacatctataatattgtatgac
ctttctagctttgaaacacattttgtggaaGTAGAGAGNNNTCAGTGTcg
aatctgacagggtatagGTTTTTCCCAGTAGAATCTGACAGGATAggttt
ttcatcgaatttttcttctgacagggtctatttttcatcaaatttcattt
ctgacaggatcgacttttgaaactccagcggcacgtccccgtcggtcgtc
aaggtcagtgcccccccttCGGGGTTTTTCCACTTATAATGCAGTGTAgt
caatgaaaatttgaatagtaaagggggcGAGAAAAAGAGCAGGaaacatc
gatagttggcaaatCTGGAGGGGGGACTTTATCTTAAACTTTATCTCAGA
AATCATTTCATTGATGTTTTAAGTCTGCTTTACTAagcatgtttgtttac
attaacccattttcgttctattttgtttagtattccttttgcaccAAATA
tttacgtttgtgtcaggttgaaattttagataaatttaTATGGGTATACg
gggggaactgatatttttcagaattttctgggggaaagcaaaaaaagagg
ggggagacTAGAAAAAGAGCGGGGAGATTTaaagaaatcaagaatttggt
gggggggacaaaccctggaggacactatgaaacCATGCAGGTTTAATCCT
TTTAGAGTGGTTTCACTCGTTagtaaaaaaaggtgtacacactTAAGCAA
ATGGACTTAAATTCAGCTTAAATAAACTTCAAAAGACTCAAATCTGACCt
aataaaataagattttcgGTTGCCTTATTTCTTTAGCAGGAGTCTTTTTA
CAATGTTCTCTTCGTAAATAAGCTAGAACTGCAGTAGATGTGCATTTCAT
TAATGCATTACTATAGTGTACTTGACATAATTAACAGATCGATGTACTAA
CAGAAGTGGTTCAAGCAGTTGGTCACCGAATACCAGTTTATATTGATGGT
GGTATTCGATCAGGAAGTGATGTGTTCAAAGCTCTGGCATTGGGTAAGCA
TCCAATACCGAGACTATAATTTTTGGCCTAACAATGATACACTATACATA
GATATATGCATTTGAAGTCGAACTATAAAAACTGACCATTTCGAAAAGTA
TCCACCTCCAAGGAGTGAATGggatttgatatgaaattttaaATACTGGA
TGATTTGGAAATTGCGGTAGTTTTGTTGGTATTGTCTTTTAGTTTTTATC
ATGAAGATTTCATAAATTCATATCAATGGTCACTTTTTATATTCTTTAAT
GTTGTATAGCCATACATGTCAAAGCCTAATCTAGACTTTCAGTGATTTGT
TGCTTGATCTAATATTTCTAATAATGTTTCTTTCCTAGGTGCGAATGGTG
TTTTCATCGGGCGCCCAGTAGTTTATGGTTTGTCGTATAATGGCAGTAAA
GGGGTACAAGAGGTCTTGCAACATATAACAGATGAGCTGAAATCTATCAT
GAGGCTAACTGGTAAGGATGAGTACTAAGAATTTCAATTtatacacccct
ttctcgcagCCCCGTGAAACTTTTTCCCCAACGGGGAtaaaagtttttat
tgaaatctcaatgggaatagaaattctattggtccaaaggttaaaaaatc
cagtgaggatggcttcggagtgcaattttcaaacattgaatttcgaatcg
GGATGAAGTTAAAAtttcccagcgggtctgtgacaaagGGGTGTATTAAT
TCATAATTGCATGCAATAGtttgaaaaattgtttcattTCTTCTACTCAA
AGATAGTGTATCTTATCATCATTCAACTTTAGGTTGTAGAAGGATTAGCG
ACATCAATTCAACACTGATATACCATGAAAGTCAATTTGGAATTTATTCC
AAGCCCAAAATTGTGCGGTAAGTGGTAACAGATATTACAGCTACTAAAAA
TTTCGAGTATATTAAGTTGCATTtgctaaataaaataaattcaaattgaC
TCCTAACATAAAAGACATTATCTATGCACGCCTTTTGGCTCAGAATGTAT
TTTCAAAACGCTTTATAAGTATTACTTTTTGGATTCTTGATTTTTCAAGA
TatatgaattttaaattttaaattgaatTGACTTCAGGCATTGGAAGCTT
ACTCCAGAAGCTCCAATATGTGTTGCAGACATCAAGGAAGGTGCAAAACA
ATATGGCTTTCCGATAGATGAAGATATCGAAAGGATTTATGAAGAAGCTT
TTCAAAGGTTTGAAGAAAATAATTAAACAAATCAACAAAGGTTAACTTCA
AAAGGTTTCCAAAAGTATCGATAAAGATAATATTTTCGgaattattttga
attcatttaatTGATGTGGATATTTTTGGCTATAGTAGAACTAAATCGAA
AGCTTCATCGAActtgttctttctttttcaacaaaGGTTACGACTACGAC
CGCGACGTTTGTGTGGATTACCTCCTTTCGAAAGAATGAATGATTTGATG
CCGATTTGTTTATTAGACCATGAAGATACACATGAAATGATATCCATATG
TAATGTCAAAGGTAATAACCTTACTCGCTTTTTACTGTACTTTATCCAAC
ACCATATTTATCTACATAGTTGAAAGGTTTCACCACAAAATTATTAActc
ttcaaattaaaaaggtTTTCAATAAAATGGCTTTATATAATAAAGTAGAG
CCTCTTTAGCTCGAACTTCTAACTCAAATgtatccttaactcgaacaagc
ttactccataactcgaaagtTCTTtagctcgaacaaatttgtgtttccgT
GCGTGATTGGAGAATACACTGTATTGTTTTAGAAGCTTGTTatttggaaa
tcgaaaatgaaaagGTTGACAAAGAGAAGCTTGACAAACGAAAATACAAC
GGATTGGTGATAGATATTCGTCACAGTAATTTCAACATGATAAAGAAAGT
GAAATCAGAAGCACGGCTACCAGTCCTAATAACAGGTGTTATGAGCAAAG
ATGATGCATTAGAATGTCTTGATTATCAACCTGATGGCATCATTATAACA
TGTCAAAATACTATAGATCAATTGACTGCGGTATATAAACTTCAAAACTC
GATTAGGGCTTATTACCAAAGTATTTATATATTTTCTATTTGGTTTCTCT
CGAATACCGAATAGTTTGTCGAAATCGTACTTAGGGAAAATGTCCTCTAC
TCAACTCGACTGATAACTGGGTCAAAGATGAGTTTATTCTATTGGAAATT
GAGTCTTTGGTATATGTCTTAGTACTATGTATTTTGTATTCCACTATCAT
TTGCTTCAGATTGATGCATTGCCAGAAATTGCAGATGTGATCAAACGGAG
AATACCAATATACCTATACGGTGGCATACGCAAAGGAACAGATATCATCA
AGGCACTTGCTCGTGGTGCTTCTAAAGTATTTGTCAAGGAACCATTGTTA
TGGGCTTATTCTTATAAGGTTTGATCCATTTTCAattactacacgttttt
tataagagcattcataattttttatgtctttggatgttttttacattttg
agTTTAATGCCTAATAATGTTCTTAATGTTtgtattttaccattttgtga
tgattctttccatttttctaggaaattgggtgttttggagtccgcggagg
cttaaaatattcttaacttgttaaTACTTTGGCCATCGAAGAATTATACT
TTTACATTATTGGTATTTTTGTTTTACTGTACATGACTATTTCCCCCCTC
GTTCTTACTTATTTATACATCATTACAGAGTCACTCCCTCTTTTCGTTTA
AGGGATCATCGGGTACACTTAAAGCGCTAGAAATCTTGAACTCTGAATTC
CGAAGATCTATGTATCTGGCAGGTATAAACTTTTATTAAAAGCATTTGGC
TTCAAACTCGATCTTGTTGGTAAGCTGGGGTTTAGCACTGTGACTTCTTT
TGCCAAAGTGTctgttcaaaattttgattctttaATCATTAGATTTATAA
TTTTGTCTCCTTTAAAGAAGATGAATTGTCTTGAAGTACCTATCGGCCAT
TCTTGCTTTGCCCCTCTATACGTCGGCCCATAATCCGCCACTGtcattta
aaggaagaaattttggcgggattttaatttggcggatggccgaaaaaaaa
ttttcagagggagtttaatttggcgtttgcaggatatttttggccaaaat
cgtTATCAAATGAGCACCAATTTGGGGAATgcgttaaataaaataaattt
cgcgggaatttaactTGGCAGATGGagccaaaaataaattttagttgGAA
CTTAATTTGTCGGATTTTGgcgaaattcgccaaatccgccatATTTTCtt
accgccaaaatttcttcctttaaaggtAATAATGCCAATTGAGCCTTAAT
AAAGCCAAAACCTATGAAAGTGGCTGAATTGTCAGCTAAATAGTCAAGAT
AaactgaaattttcattaaatctCTCGAACTTCGTTGGTAATTTTTTGAA
GACTTCATTAAAAACTAGCCTTGTGTTTACCACAGGCCAAAAAATAACGC
CATTAAGGGTCGGCACAAAAACAGTTGTGTTGAAGTTTTTATAACATTCT
CACATAATTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNatagagatgacgcgttctttagaaaaatataataa
aagtttttgtttgaatagttaacgaccaatccaatgacaaaaattcttgt
aaaatgttcaacttgacccCATAAAAAGGCCCGATAAGGTATCTGAATAC
TGTATCATTGAAACTTAAAAATATTATACTGCTATGTTTTCAGGctgcaa
agattttgatgctATCAAACCATCGCTGGTCGTAAGTGAACAATATTCTT
TCAACAAAAGTGCAAATTTATCGAAGTACTAATCCAGTGACATCAGAACT
CCATGATGTCTAATAAAAGGATTCCCCAAAATGATATTATATTCTTCTGT
TTTATAAGGAACTTGCTTTGGTAAACGGTGCtcttgtacacgttttttta
ataagaatatcagTAATGTACTTTgactgagggtcaagtattcttaagaa
attgccaaaattccAGGTGAAATATTCGTAACGTATTCTTATtatttcag
agaaaaatttcctttttagaCAACTTAAGTGAGTAGTTCTAATATACGTA
TACATACACAAAAGAAAGTACACTATATCTCTTTTGttaattttcaccct
gatattcttatagaagatattcttgtaaaaaaagaagcgtgtattCTGAT
GCATTTAGTGGGACTATGTATTTCATTCATTATGTGAAATTATTGATACA
TTTCTTACACATTTTCTtattcagatttttttaaactcgTTTTGATTGAT
TATAAATTGTACAATTTTTTAAACTGTAAATAATGATAGATTTAGaatta
aaatttatgaaatatcAAATAATACTCAACCTCCTAATTTGCGATTTATC
TTGTTGCTTTATATTGGCCCTATATTATTCTGAAAGTTGCCTTTACtaac
caaaaaaattgaattgcaGTTACCTGAAAGTCGATTAATAACACTTACTC
GATTTAGAACGTTGTTTTTACATTCAGGAGCAATTGAAAATGGAGTACCA
TACAGTTTTTTACAGAGGAATTGAAATCCACAGGAAATAAACATGTGGTG
TGAGGAGCAGATCTAGGAGCAAACTAATATTACTAGATTCGATCATACTG
ACTTGTCTTTGGACACATTTGGATATTTGAAGATACCCCATATTCGTAGC
TCCATTTAAACATCACAAAATAACACTCTCTTCGCTCGCCAGCTAGAGGT
AAAAATATTAGAATAATTAGTTAAACTAGTTCCAAATTATAATACTGCAA
AAATAGAAAAAAATTTAAATAATGTTTCTCAGTTATGTATGTTTTTCAAT
AAAAGTTGTTAACAGGTTTTACCAAGATATTGTAGAAGGTGTTTCGGTAA
TTTTGAACTTAAATATTCATCCGTGAAAGATTTCAAACATGCAAGTCTAG
CTTTGTGCTTCAAACTGGTCCCATCAATAAGTGTTGATTTTCGAAAATTA
AATATACCATGAATATCACTTGATCTATACATTAATTCGCTCATATCCTT
GTTGAAAACCAGCTTCCAGACCCTGGGACCATCTAAAACACAATGGTAGA
CTTTTTCACCATTCGAGATGTCAAACACGAAGTAGCTTGTACTCTTGGCT
TCGTATCTTTCATTTCTTGTTGTTATGCCAACACATAacaaatatctttc
aaattGCTTCATCAATCTATAGGCtctataatttgtataattaaCGTTAA
ATTCGACATTTATGTACAGCTGAGATTCCTTCATTGTAAGAATTCCCTTT
TCAGTCACCTTTAAAAGTTGAACCATCTTGTGTGAGGTTACAGAGACAAA
AACTGAGCCGTGGACTTGAGTAAAGAATGAGAAAGATTCTGATTTCGTCT
TGTCATCGCCGACTGTGAATGAGAATAAATGTTTTCCTGAAAAGTCAAAA
CAACTTAACAAAGTCAAGTGACAGTCGTAATCGTCGCGAGGTCCACCATG
ACCTGTAAAATAGATTCTTTCTGCCTCGAAATCAAGAAATATATTTGGAT
CAACGTGCTCATCATGCCAATCTAAACCTATAGAATGATCTGAAAATGAA
ACTTGATGTTCCCCTATCGGTATGGTTATACTTTTATATAAAGTGATCCC
TTGTTCGTCAAATTTGATCAGAGAGACATAAATGTTGTCGTATCCGCTCT
CTTCATCAAAACAAAGTAGGAGCACATCACCAATAGATTGACTTTTCTTG
ATCGCCGAATATAGCAACGTTAAATCTAAAGGAAAATCTACAAGTTTATT
TTGATCGTTCACTTCTCTTGTGCTCACTGATATTTGTTCTGAATAAGTTG
GACTAGTCACTTCGGGAAATAAATGTCCCACAGTGCCAGAGTATAGAGTA
GTCTGGAAGCCCTCGATATCCCAAATTGTTTCTATATTAAACCAGCGGCA
TGACTCATGGTCATATAATAGGCCATCTTCTTGTGGCGATATCTCCATAC
AAAGTGTTACGCTAAGACGCTTAACTTTGCTTTCATTATCATCATAATAT
AGAACAGCTATATCAAAAAAAGGGTAGTCAGACTTTTGTTCGTCGAGAGC
TGTGTAGTATCTATTTGTCGAATCAAAGCCATGGAAACGCCAATCAGAAT
ACAAACGCCACCATTTAAGGTTTTTCTCCAGATTAGCTTCCTCCCTACGC
TCAACTTCTTTAAGTATGGAGGGTAGAAAAGATTGTTTTTGATTAGCTAG
CATGCTTCAAGCAGTCCCTTGTTTTCCCTCCAGTTTCATCAACATCANGA
TTGTTTTTGATTAGCTAACATGCTTCAAGCAGTCCCTTGTTTTCCCTCCA
GTTTCATCAACATCTTTTCATAGACTTTCGCTCTATCATGAATCAgtgtc
aaaataatttttcctaatGATCAAGTTAATTGCTGATTTATTACACACTT
CACTAAAAGTAAATTCTTTATAATGGATATTCAGCTCCATAACAAGGTAG
ATTATTCTATTTTAGACTAGTACACAAGAATCTGAGAAGCTTTAAAATGC
GTTGATAAGCATTCTCGTGTCAAAAAGGGGATGGCGAAAGATTACACCAT
CATATAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047875TCONS_00047875Clytia hemisphaericatranscript
TCONS_00047876TCONS_00047876Clytia hemisphaericatranscript
TCONS_00047877TCONS_00047877Clytia hemisphaericatranscript
TCONS_00047878TCONS_00047878Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047875-proteinTCONS_00047875-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:416565..427071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19	0.97	0.65	0.77	3.58	2.64	4.73	5.04	5.05	5.03	7.57	4.41	7.55	7.41	4.32	5.15	4.18	4.53	6.73	6.17	5.57	5.39	2.81	2.96	7.4	7.91	2.74	1.61	3.97	4.39