XLOC_030474 (gene) - C. hemisphaerica

Overview
NameXLOC_030474
Unique NameXLOC_030474
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_139:503227..512507+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030474 ID=XLOC_030474|Name=XLOC_030474|organism=Clytia hemisphaerica|type=gene|length=9281bp|location=Sequence derived from alignment at scaffold_139:503227..512507+ (Clytia hemisphaerica)
TGACATTAAACAATCTTTTCAGACAACTATTGTATAGTAATGAATTTTAC TTGAATTAACTTGAAATATCAGAttatgaatttcacttttttagTGCCAG CAAGTTCATTCATATTGAGTAGAGTTAAAAAACCCATagattaaagaaaa cattacAACAGTGCTGATGATGGCTTCAGAAATAAAAGTTTGTGTGATTG GACTAGGAGAGCTGGGGACGAGAATAGCAGGTGAACTTTTGTTTGTATAC TTACTTTTGCTCAAATGATTATCAATGCTTTTCTCCCGCAAGTTTATTTA AATTTGGGTAAATTTCCTAACAAATAACCCGTCCATCTGCGCATATCACG CGCTGCTCTAAAGGGATTTGGTGATCTTGATCATCTGCTCagccaaaata aaaaacatttgaaaacgaaagcagaAGCGAAAACGACTGGGTTGTATATA TAGATAGTTCATGTTTATATTTATAAACCTGCTATAATTTCACAATTTCC ACTAATCGACTTTTCAGGTGAATTGAGTTTGAATTATGGTTTGCGTGTAC ACGTGTTCGATAATGATAAGTTAAAGATGAAAGATGTGAACTATCAGATC ACACAGCAAAAAGAAGAACTTATTCGTAATGGATTAATCTCACCCGTTGA CTCATACGTAAGTTTGTTTCTACGTCTTCTTCATCGTCATCATTCTCGaa ttattttggtttaaatattgaaaattatcgatattttttgctgagtcaac AGTTTTTCAGTATATTTATCCACCTTGAAAATGAATTGATCTTCATCTCG AGATTtacaatcagcgccgaaatatattggcaatggGTAAttcaacgttt ttcagaatttaatgGTCGGGttagaattgcagtttcagtacttccacttt gcttcattagatttttcgatttgggagggattaagtggcttccaggctat attctcagccttaatggaacatttttgagtttttatatgctgagatccta aggtccctaagtcttaagtctaatgtgaaaactcagagttaaaactgtGC TTTCCGaactgtacttcaaagcacttaaaaatcactcgcggtttcaaagt tttgagggaatttcccttttttgccaaatatttcaGTGCCAATTGCAGAC ACCGCAACttgacaaaccataccatttttggattttACAAACTCAGGAGC TATCCAGTTGtgagaatgattttttctgaaaatgctctcAGGAGCTATAA ACTCATACAAATCAAATCTATAATTTAGCACCATAGTGCCCCCTTCTTAA ATACCTATTTTTTGGTACCCCCTCCCCTCCAATTTTGGAAAGTGTCTCTG ACGTGGTATTTCTCCGTCTTATCCTTTAGGGTCATTTAATCTCTCAAAGT TTAGTTCAAATTGCCCTTTTACCTGAACTTTTATACTAATACAGtgaaca aaattgaaatttattgtGATCTTATGATCTTAAAAGAGCTTCAACAcctt aggcgtacaaacttttgtgagcagaaactttcgcgattttggcgaatttt ggcccttttcgcgaaagtaaatatctttaaaaattctaagaaggccattc gcgaaagtttatactcgcgaaaaattcttgacaaaatagaaaatctttca aacttcgaataaaatataacttttatggcaatttttagcctgctaaaaga ctaaaaagtcaaaggacaaatgtttaaagccaatccaagaagtatttgtc cctctaaaccattttttcatgtgaaaattctcaattttacgtcttgattc gcgaaagtttatgctcgcgaaaaatatttttccgttaaattcgcgaaagt aaatgtcgtgaatttcgcaatttttagtcctcgcgaaagtttctgctcgc gaaagtttgtacgcctaaagtatatcGACCCCCTTCCTAAGCAATCCCCC TTTATGCTCATATCCCAGCCCTCCGAATTTCTCTATCTTCGATTTTTTAG AGAATACCGTCGCCCCTCAAGAAAGGGAGGGTGTAAGAACTACGAGTACA TTAATCTCGGGTGACCTTCTCTTCTAGTAAAGAAAAGTTTCTCGCAGTGT ACATCCAAGATTCAAAAAAGCTGTTTAGAGTAATATTAAATCAAAAGAAC CGAATCATGTTTTGAAGCCAAACccttagacgatgttatcgtccgataca gtgatagtaaaggccgGAGAAATAAGGTGTTATggtggtatacggaaaaa aaaatcggcaggagagtttcgaagaaagactggcaaactctaccggctgT AAAACTattcttttcggcaaaaagccTTTTTGCGAATtatcttcggcttt gggcttatttcttagatagtgatttgtttTAGACTATAGCATATAGTCTA CCAAACCCTAAGAGATAGAAGGTTCTTTAATTAACTGGATCAATGTGACA TTATTTTCGTAGGGTGACGTAGAGACATTCGAAACACTACAGGAAGCATT GATTGATGTTGATTTTGTATTTGAAGCGATCGTTGATCGATTGGATGTGA AACAATGGCTTTATGAAAGTAAGTGGAGAGTATTATCGATTCATTTTCAC TACCTGTATAGTAACCCTTATCAGGAATGCAACCAAATGTGATTTGTTGG GAAGTAGATCGGACTTTTAGACTTGAGAGGGTGTTCAATCACACGCCTTT GAGTCCCGAAGATGCTAAGCTTGGCACCCtactactttaatcggattaat tttcgtgaTTTCACAaacttttgccattttcgcgaaattaaatctacgca aaaattttcaaaacgctgactcaagaaaatttggcgatttttttgcttta atctcgcaaaatttaatccgattaaagaaGTATTCAGGCTTTTtggcgaa aaaaaatatcatccAAAAATCTTCTATAAATACTCGAGAAAGAGTACAAG AGCTTTTAAACAGGAAATTTAAAACTTGTCGAATGTAATTTTGCACACAA GGATGAAATTGTTTCCTAAATGTTTTATTTACTGTACCTTACTCTATTAA ACATTAAGGTTAAAACATGGCGAAAGAGGACAAGGTTTACGTCTTTCAAA GTATTGAAATTTATCTATCAAAGTTTATATATTCTATAAATCTAACCcgt ctaatttttgaaaagataaaataatTTTACGCCAAGTCGCTTCAAATAGA ACAGTTCATCCGAAAAATCCACATCTgcaatttttcttgattttgttgCA AGCCAATTTTGCAATACCAGGCGCTTTGATCATACAGTAGCGGTAGGAAG CACATCTTGTGGGGCATTTCACTCGATCCCAGACCCTTCGAAGGCGAATA CGAATTCGTGGTACTCTAATTCTACGGAACCGAATGAAACGTTTTTCACG ACTTTTTGCAAGGTCTTCCTCATCGTCATCTTCTTCGTTGCCGTCGTTTT CACCTTCCAAAATTTCTGTGGAAGTTTAAGAAAAATGTAATTGTAATAAT GTTATATAGTTGACTCTTtccaattcgatcttcaagggactaaATATTTT CGCATTTAAAAAAGATCCGAATAATAGAGGATGGAATTAGAGATGTAAGC AACCACttgaatttttccaatttgATGAAATAATTTACTGAACGTTCTAA ATTTtcttccaagaaaaaaaaaaaataagtataTTAAGGAATATCAGAAC ACCACAAAAAACCCTACATTTTCTTTAGTCCCTCCATATCTCAGTTTAGC CATATTGATGGTCGAACCAGGGGGGGGGTAGCCGTGGCTTAAATGTTTGC AAAATATCTCTAAGGAatccaaaaacttcaaattgtttTCACTttaagga tttttgaaaaacatttcgaTAAAAAGATCATTCTAACCATACCTTGATCA ATTTCATCTTTGAGTTCTTGAGTCATAACACCCTCCTCCTCGTTTTCTCC ATCAATCTCACCATGGTCAGCATTTATTTCATTAGTCTCTGGTGCTTTCA TTGTTGGGGACATTGATGACCCTTGAGAACCTGGAATGAATGGGAGATTT AGAGTGCGGAAAGATTTTGAGGATTTTGAATCGAATCGTTTTCAACTCGC cgaaaatttcaaatcagcCTCTAGAACTGATTCCTACACATTAGGCAAAC ATGGGACAGGTTTGCTGAGGTTCATGAAAAACAGAAGATCTTTATAGATA AGGGGCATGGGTATGAAAGGAGAATCATTTACAAGCCTCCGCTCccgtag cccggggtccacttaaagcttttttatagactggatagtgcgattaagtg gccctgtagtatatggtaatatgcttttgctttttgtttctcattcttaa ttatatttttcaactttgagtagcttttttgttatttgggttttaatttt tttttctccaaaatgacgacctcgccaaatgctccgCTCCCGACGCTCAG ATTGTTCTAAAGTTgttcttgaaaattttggacATGTTTCCTTATTGTtt ctttttaagataaaaacgtaCACTAGTCATAGTCAAGAATTTTGTTCTAG CCTAACCAAGAACCAAATGAAAATAGAACTTACATGTTGCTAGGCCAATT GTTGCCACAAACAAGAAAGCAAGAAATGTAatcttcattgtttttttcgc tCGTTCAATCAGTTCAGCGAGCCTTCGATAGATTGCTTTATTGATTAATG ATGAAGCCTTACTTTTGGTGTTGCTCTTTTATACTGCATTAATGACTGAA GAACCCGCTAATTTTGTGTGtataaaattactaaatgttcCTAGTATGGT CTATATAAATATTTCAGGGGGTATAAATTTAAATGGGAAACGAATTGCGG TAAGTCACTTGATACCCAATTGAATTTTCTTCCTAGTTGATTCTGATCta ggaagaaaatatttaagtgTAAAGTGTGTGAGTAATGTCTTAGCTTTCTT GAAGGCTGAAAAACCATGTTCAATACTTTATTAGTATGAAGAATTAGTTT GTTGAAAAACTATCTATTCAAATCAAGTCCCAGGAAccttaaaaatggtt aaaacacccctttctcacaggcCCACTTGGACCCCtgcccactggaaaat ttggctaaaatattgtccccggtggaaaatcatcCTCGATTTTTGGCTCN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNAAACTATCTATTTAAATCAAGTCCCAGGAACCTTAGA AATGGTtaaaacacccctttctcacaggcCCACTTGGACCCCtgcccact ggaaaatttggctaaaatattgtccccggtggaaaatcatcCTCGATTTT TGGCTCatctcaaaataaacaaataaaccaatcctcactgcaaaatatta tgttatttttcccatccccactgaattttctgacttgaaaacaaaagaat taaaatccccagccataaaaattattggaatatcaatccccattgagttt cagtccgaTATTTTTTtcccactggctgataaaattctaccgggtctgtg agaaggggatgtgtTAAAGACTCTCTCGTAGACCTTCTTAGTGTATTACT TTTTCTGCAGAAACAAAAGTATGAGCCTTACcaaaagattgaatttcaat gtCTTTTTTTTACAGAGATCACCCACAATTGCAAGAGTGACACAGTGGTT TGCAGCAACACATTACAGTTGAATCTGGAAGACATTGCCGAAAGCTGCCT GTTTAAAAACGTAAGTTAACGATTTAAGAATTGACCTCGTATCGTAGACA CCTCGATTCCGTTTGATGTAGAAAATTGTCTCCGACTGAATGTTAATCTT TACTGATGAAAAAGGGCCAACGGGGCACTGAGGTTTTTCGGAATAGAAAA TAGAGAATGACTAATGGGCTGTTCCAAAAAACtcccatacaggggggtgg acgaaccttttcaaatcaaaacaaatttcttggaaagTGTAGATACctcc tggaaaatggcaaagaCCCTGGAAAagattattttcatctcttaaagtga gggtggacgaactaataTCAGTCGTTTACCCCTTGGAAGTTTAAGGATAG CTTTTTACATCCTGGAAATATGAAAagtaccccctggaaaagttcgtcta cccccctgtatggttataaaataatggaatggcccaatatgaCCAGAAAT GTCACTTAGCTTTTAGGATCGACAAAAGACAATTGATTTCATACGAAGGA AGAACTATTTGGTaaataaatttcatatttttatttttcttatttcttca gAGGGTGATTGGTTGTCGATTTTTAGTTCCAGTCTACAGAATCCCATTGG TTGAAATGATGTACACTTCCATGACTTCCATTGACATCGTACGAAAAGGT ATGTATgttactgacctttatatatccctggactaTATCCGTCATCATAT CCGCCGCCGTCAGCTAtacccgccatctttgatcgaaatttcttttgaat tggTATACCCGTAAaaaagccattgcagtgttaaaaattaacgtctaacg gcgctacatcatcataAGTTATGGGGGTAAAATAGATCCAGCGcactcga tgcatttacacctctattgaatagtgccgccattagggtaccatttttaa aaaactccgatcaaatattttgcttggcccGGATTAAGAAGCTCTGTCCA GGGTAAAAAAGGTATGTATGACATACTACTAAATAATGCTTGCTTGTTAC GTTATTTTAGCCTCAAGTTGAGGATTTTGATATTGGTATCTCCCAAAAAA CCACCATCATTAATAGCTTTTGCCAGAGCTTTTCTTTCCAATTGAATTCA TAGTAAAAAGAggaaataaattgaaatttcgtcaatgtgatttttttcag tgaagACATTTTTCCAACGAATTGAAAAACAAGTAGTAGTTCGACAACCT GATGAAAAACCAAGAATACTCACACTCAAAGAATCAAGAGAATTCTGGGA AGGTAAGCGAGCTAAGCTGACAAGTTGAAATAGTTTTCTTTTTCCACATT GTTACTGTGTGAAACCAAAAGTGTAATGACAATGGTGTGTTTCGGAGGGT TCAAAATATCGGAATCGGAGTACCGTATCTTTTTAAGGGCTATGACCATA GTCAAAAGGTCGGTTATGAgctttgaagataaaacttgtgtttttgagtt ccttacacttttaacaaaaaactgtCTTTAATTTATAAGTTGTTTATGAA TTTATTCTATCAGGAGTAATTAGCAacttaaaattacaaaaattacgTTA ATGAAATGCTATTTTACCCTATTTTACAAAAGGTGCtcagttttaatggg taattaacctttatgtttcaaattttttttgaattatctgcatagatttt gagacaaagaagcttttacaaaaattttccgaaaatctgttgttagtttg gttaaagatGCACCATCTAgtgcaaaacattttttcaaaatgtttttgtt tcgtcGAAAATAAGGTCCTGAAAGTTGATATACTTGTCTTcgcaaatgtc ttcattttcgtcttcatcaaactttttcaatgcaatttttgaattttcag aatcaggaatagttggcctaacagaaaatatataacatgccatagttttg ttgtttacatcagtcagaaaaacacaatttataCACGACAATTacaaaaa attcactatggtcagagcccttaattaaAATACCGATCTACCTTCAAGCC AACATTCTatgaaatcatcaaaaaattgttttgtccCCTTTAATAATCTA CAATTTTGTTAGAGTTGAAAGATACTACTAGATACCTTCGAGTCCTTTTA GAAAAACGAATTTATCCCAGTTCACATCGACCCTGTAAAAAAGGATTTCG TCACTTTTAGAGGCCAAGGAAAAAGTTCGGAGAGACCAATTGATTCAAAA CACAATTGCATCTCATGGAAGTTTCCTTACACCAGCTACCATACTGAACA CAGATAATTCACCTTGCAAGTATGACCACGAATCTGTGGACGAAAATTCA CTCGAACAACACAGTGATACTTCGCTTAGTAAGTGTGACCAAGGAGCGAT ACTAAAACAACCAGGAACAGACGTAGTAAATGAAGCCACGGTTTCAAACG ATGATCATCGTGAAACTGAAACACATGTTGTCATAGAAAcacaacaaaaa gaaaaactcgTCCAAGATAAACCCAAAGAAGAAGACGATGAGATATTAGG TAACTCTTTTGTGTTAAATACAATGTCTGATATAATAAACAATTTCCATG AGGggattttcaagatatttccttAATATTTAACCACATTTTCCATCAGG AAGAAAGTTTCTTTAGGTCATAGAACAGCATTACAGCATAGAACAGAGAA AGTTTTCTTCAGTTGAAGAAGAAACTCTAGTACACTcgttttcttttata ttctACCTTTCAATTCTAGGTGATGATATACCTAATGAATGTGTCTTATG TAACGATGCACGAATTAATTGCGTTTTGGTTCCTTGTGGACATATGTGGC TTTGCTATCAATGCGGGATGACCGTTCTCAAAGCCGATAATGGTTGTCCT GCTTGCCGAAAACCCATCATGAAAGTGATGCGTGTTTACTTACCGTAGTT GATCGAATGacctagctggcacacaacgttgttttgacgttcatctaatg ttatatggacgttgtgaacgttagttaaacgtttaaacaacgttgtgtgc cagctggggaccATATATCTATGGCTCGAATACTGGTGGTGTggcaaatt ttcttcgaattatgaGGAGTTCGAGTTAACAAGAGCCCATGTATCTAAAA AAGATGTGAATGTGGGAAAGACATCTGTTGATATGAGCATTTCATTCGAT TTTTATGTATATAGGGTGGCAGCTGAGAGAAAAGACTTCACaggggtctg tgagaaagatTGAAAATTGTTCATGGCGCGTCAATGACGAACAATTAACT TACCGTATATTTCAGTATATTTATTAGAAAACCTTGAAATGACTAAATAC GGTCAACTagttaaaagtaataataatAGGATCTCAAAATCGACATCGAA TAAATTAGGCGTGGCAACAAGTAAATGAATATGGTATGATCATTTAGTAA AGTGGCATTTGAAGTCaacaacttttaatttttcaagataTATTTCGAAA CTCTGAGGTTCCATCATCAGATTTattaatcaaaaattgaaataaaaacg aGTTAAAACAGGTTAAAATACTGTAAACAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047889TCONS_00047889Clytia hemisphaericatranscript
TCONS_00047890TCONS_00047890Clytia hemisphaericatranscript
TCONS_00047891TCONS_00047891Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047889-proteinTCONS_00047889-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:503227..512507 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2 1.13 1.43 1.91 6.46 4.82 12.12 13.92 9.16 9.95 15.65 6.92 10.26 10.58 9.91 11.9 3.16 5.38 4.5 5.42 3.69 2.42 2.36 4.35 10.27 10.69 11.84 7.67 17.61 13.67